AlfalfaGEDB | MsaG013236

M. sativa ssp. caerulea / MsaG013236

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013236	XP_013459501.1	94.333	300	13	3	1	298	1	298	0.0	522

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013236	sp\|Q9LSI7\|MYB35_ARATH	38.080	323	162	8	1	294	1	314	6.78e-52	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013236	tr\|A0A072UV81\|A0A072UV81_MEDTR	94.333	300	13	3	1	298	1	298	0.0	522

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013236	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013236	MtrunA17_Chr3g0093811	94.922	256	10	2	44	298	14	267	2.88e-159	444
MsaG013236	MtrunA17_Chr6g0452271	38.663	344	157	11	1	298	1	336	8.08e-58	189
MsaG013236	MtrunA17_Chr3g0103281	58.824	136	54	2	1	135	1	135	3.47e-48	163
MsaG013236	MtrunA17_Chr7g0217741	54.264	129	57	2	1	128	1	128	5.98e-41	144
MsaG013236	MtrunA17_Chr2g0281071	48.062	129	66	1	1	128	1	129	1.18e-40	144
MsaG013236	MtrunA17_Chr4g0048511	47.761	134	69	1	1	133	1	134	3.25e-40	143
MsaG013236	MtrunA17_Chr4g0042671	39.286	224	106	7	1	211	1	207	8.40e-40	143
MsaG013236	MtrunA17_Chr1g0193371	50.735	136	65	2	1	135	1	135	5.35e-39	140
MsaG013236	MtrunA17_Chr1g0211161	50.000	130	64	1	1	129	1	130	1.34e-38	135
MsaG013236	MtrunA17_Chr1g0193801	51.128	133	63	2	1	132	1	132	1.43e-38	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013236	AT3G28470.1	38.080	323	162	8	1	294	1	314	6.89e-53	176
MsaG013236	AT1G18960.1	37.615	327	155	11	1	298	1	307	3.96e-51	171
MsaG013236	AT5G56110.1	59.854	137	51	4	1	135	1	135	8.09e-48	162
MsaG013236	AT4G21440.1	48.507	134	67	2	1	133	1	133	7.19e-40	142
MsaG013236	AT5G15310.4	52.713	129	59	2	1	128	1	128	1.36e-39	139
MsaG013236	AT4G17785.2	51.163	129	62	1	1	128	1	129	2.03e-39	141
MsaG013236	AT4G17785.1	51.163	129	62	1	1	128	1	129	3.02e-39	141
MsaG013236	AT4G05100.1	48.062	129	66	1	1	128	1	129	3.57e-39	140
MsaG013236	AT3G01140.2	53.125	128	58	2	1	127	1	127	4.24e-39	140
MsaG013236	AT5G15310.2	52.713	129	59	2	1	128	1	128	6.30e-39	139

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Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCTTTCTCAAATG+GGG	0.633115	3:-45599243	MsaT013236.1:CDS
AAAGCAATTGCCACCCAAAA+TGG	0.287493	3:-45599092	MsaT013236.1:CDS
AACGATTAGATCTTCTTCTT+GGG	0.424842	3:+45599366	None:intergenic
ACAATGATGTTAAGAACAAT+TGG	0.395885	3:-45599279	MsaT013236.1:CDS
ACATCATTGTCTGTTCTCCC+AGG	0.541477	3:+45599292	None:intergenic
ACCCAAAATGGAAACATTTA+TGG	0.218699	3:-45599080	MsaT013236.1:CDS
AGAAAGGCTTGTGAGTAACA+GGG	0.701057	3:+45599215	None:intergenic
AGAAAGTCATTCCAACTAAA+TGG	0.304797	3:+45598911	None:intergenic
AGTGGAGGAACAAGGAGATA+AGG	0.452166	3:+45598961	None:intergenic
ATCATAGCTCAACAACTTCC+TGG	0.362064	3:-45599310	MsaT013236.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	45598706	45600314	45598706	ID=MsaG013236
Chr3	mRNA	45598706	45600314	45598706	ID=MsaT013236.1;Parent=MsaG013236
Chr3	exon	45598706	45599469	45598706	ID=MsaT013236.1.exon2;Parent=MsaT013236.1
Chr3	CDS	45598706	45599469	45598706	ID=cds.MsaT013236.1;Parent=MsaT013236.1
Chr3	exon	45600182	45600314	45600182	ID=MsaT013236.1.exon1;Parent=MsaT013236.1
Chr3	CDS	45600182	45600314	45600182	ID=cds.MsaT013236.1;Parent=MsaT013236.1

Gene Sequence

>MsaT013236.1

ATGGTGAGGTCTTCAAGTTGTGAAAAAAATAGTGTCATCAAAAGAGGTGTATGGATTGCAGAAGATGCAAAGGCACCTTCATTTGCCTCAGAACATGGATCTGTTAATTTGACTTCTGTCCCTAAAAAAACAGGTGTTAAGAGGTATGGAAAAAGTTGCAGGCTTAGGTGGAGTAACTCCATGCTTGATCCTAAGCATGATGATAAGTTCACATCCCAAGAAGAAGATCTAATCGTTAAGCTTCATGCAGCCATAGGTAGTAGGTGGTCTATCATAGCTCAACAACTTCCTGGGAGAACAGACAATGATGTTAAGAACAATTGGAACACAAAGCTGAAAAAGAAGCTTTCTCAAATGGGGATAGACCCTGTTACTCACAAGCCTTTCTCTAAACTCATTGCTGATTATGGAAATATAGGTTGTGCTAATTGTCATATTAATCAAGACTTTGGGAATCAAAGATTGATCAGAAACACAAATGACCTATCAAAGCAATTGCCACCCAAAATGGAAACATTTATGGATCTTTCTCAGTTCCAAACCAGTAATAATAATAATAATAACCCAACATCAATGTTTGTAGAAGCATTCTTGTCATCATCATCATCACCATTACCTACCTTATCTCCTTGTTCCTCCACTTCAACACAAGAAACAAACTTTTCTGCACCATTTAGTTGGAATGACTTTCTTCTACAAGATGCTTTTTCACAAGATGCACCTACTAATAACCTGCAAGAACAACAAATTTTAGGTGGATTGTTATCAAAGAAAGAGGTCGTGTCACACCAAGTCTCATCATCCTCAGACATTTCATTTGTCGAGGCCATACTCGATCAAGAAAATGAGATGTTTCTAAGCTTTCCCGAACTTTTGGAGGAACCATCCAATTACTAA

Protein sequence

>MsaT013236.1

MVRSSSCEKNSVIKRGVWIAEDAKAPSFASEHGSVNLTSVPKKTGVKRYGKSCRLRWSNSMLDPKHDDKFTSQEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGCANCHINQDFGNQRLIRNTNDLSKQLPPKMETFMDLSQFQTSNNNNNNPTSMFVEAFLSSSSSPLPTLSPCSSTSTQETNFSAPFSWNDFLLQDAFSQDAPTNNLQEQQILGGLLSKKEVVSHQVSSSSDISFVEAILDQENEMFLSFPELLEEPSNY*