AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG013338


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013338 MtrunA17_Chr3g0095391 95.339 472 18 1 13 484 1 468 0.0 905
MsaG013338 MtrunA17_Chr1g0182791 32.200 559 251 22 13 487 1 515 3.97e-51 182
MsaG013338 MtrunA17_Chr7g0262691 44.398 241 96 7 274 480 202 438 1.18e-41 155
MsaG013338 MtrunA17_Chr1g0193321 58.333 144 53 4 265 403 402 543 4.35e-35 139
MsaG013338 MtrunA17_Chr7g0271251 35.762 302 138 10 164 417 245 538 4.30e-29 121
MsaG013338 MtrunA17_Chr1g0153241 58.000 100 38 2 303 400 65 162 5.10e-27 110
MsaG013338 MtrunA17_Chr7g0270871 49.107 112 49 3 299 402 173 284 3.50e-23 101
MsaG013338 MtrunA17_Chr5g0402031 68.571 70 20 1 334 403 114 181 4.02e-22 97.8
MsaG013338 MtrunA17_Chr3g0095411 97.619 42 1 0 486 527 1 42 5.32e-21 86.3
MsaG013338 MtrunA17_Chr7g0231461 45.600 125 55 4 268 387 243 359 3.52e-20 93.6
MsaG013338 MtrunA17_Chr4g0074161 57.143 63 27 0 327 389 208 270 2.96e-17 84.0
MsaG013338 MtrunA17_Chr1g0190731 53.968 63 29 0 327 389 195 257 1.02e-15 79.0
MsaG013338 MtrunA17_Chr5g0393721 44.304 79 37 2 320 391 217 295 1.10e-13 72.4
MsaG013338 MtrunA17_Chr1g0207311 37.500 88 45 2 312 389 178 265 1.79e-12 68.2
MsaG013338 MtrunA17_Chr1g0152131 39.450 109 61 3 282 389 221 325 4.38e-12 68.2
MsaG013338 MtrunA17_Chr3g0131771 47.945 73 36 2 327 397 149 221 5.22e-12 67.4
MsaG013338 MtrunA17_Chr5g0421111 51.562 64 30 1 327 389 367 430 6.85e-12 67.8
MsaG013338 MtrunA17_Chr3g0134741 34.694 98 51 3 327 419 231 320 6.88e-12 66.6
MsaG013338 MtrunA17_Chr7g0234761 50.000 64 31 1 327 389 319 382 1.51e-11 66.6
MsaG013338 MtrunA17_Chr6g0484271 33.333 153 79 5 245 387 79 218 1.73e-11 65.1
MsaG013338 MtrunA17_Chr3g0144641 50.000 64 31 1 327 389 193 256 1.79e-11 66.2
MsaG013338 MtrunA17_Chr1g0152651 44.118 68 33 1 327 389 276 343 2.07e-11 65.9
MsaG013338 MtrunA17_Chr8g0385911 35.000 120 70 5 327 444 147 260 2.20e-11 65.1
MsaG013338 MtrunA17_Chr8g0339091 50.000 64 31 1 327 389 293 356 2.59e-11 65.9
MsaG013338 MtrunA17_Chr1g0174161 31.132 106 71 2 327 430 162 267 3.41e-11 64.7
MsaG013338 MtrunA17_Chr8g0365941 50.000 64 31 1 327 389 307 370 3.81e-11 65.5
MsaG013338 MtrunA17_Chr8g0363921 46.875 64 33 1 327 389 153 216 6.81e-11 63.2
MsaG013338 MtrunA17_Chr4g0035101 48.438 64 32 1 327 389 145 208 8.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013338 AT2G43010.2 35.388 503 228 18 20 510 6 423 3.56e-59 202
MsaG013338 AT2G43010.1 35.248 505 228 19 20 510 6 425 2.09e-57 197
MsaG013338 AT2G43010.3 35.248 505 228 19 20 510 13 432 3.59e-57 197
MsaG013338 AT2G43010.5 35.446 505 227 20 20 510 48 467 6.83e-57 197
MsaG013338 AT2G43010.4 35.368 475 212 17 20 484 6 395 4.17e-54 188
MsaG013338 AT2G20180.4 36.842 437 193 17 13 422 1 381 7.77e-45 165
MsaG013338 AT2G20180.6 36.842 437 193 17 13 422 1 381 7.77e-45 165
MsaG013338 AT2G20180.2 36.842 437 193 17 13 422 1 381 7.77e-45 165
MsaG013338 AT2G20180.3 36.842 437 193 17 13 422 1 381 7.77e-45 165
MsaG013338 AT3G59060.3 43.598 328 124 12 207 509 146 437 5.85e-44 161
MsaG013338 AT3G59060.2 43.598 328 124 12 207 509 146 437 5.85e-44 161
MsaG013338 AT3G59060.4 43.598 328 124 12 207 509 146 437 5.85e-44 161
MsaG013338 AT3G59060.1 43.865 326 124 12 207 509 146 435 1.24e-43 160
MsaG013338 AT2G20180.8 35.176 398 181 16 13 389 1 342 4.49e-39 145
MsaG013338 AT2G20180.7 38.352 352 147 13 86 422 14 310 1.04e-37 144
MsaG013338 AT2G20180.1 38.352 352 147 13 86 422 14 310 1.04e-37 144
MsaG013338 AT2G20180.5 38.352 352 147 13 86 422 14 310 1.04e-37 144
MsaG013338 AT1G09530.3 54.362 149 53 6 266 404 277 420 6.47e-32 129
MsaG013338 AT1G09530.2 54.362 149 53 6 266 404 277 420 6.47e-32 129
MsaG013338 AT1G09530.5 54.362 149 53 6 266 404 277 420 6.47e-32 129
MsaG013338 AT1G09530.1 54.362 149 53 6 266 404 277 420 6.47e-32 129
MsaG013338 AT1G09530.4 54.362 149 53 6 266 404 277 420 6.47e-32 129
MsaG013338 AT1G09530.6 54.362 149 53 6 266 404 277 420 6.47e-32 129
MsaG013338 AT4G28800.1 28.753 473 221 17 39 475 19 411 5.21e-28 117
MsaG013338 AT5G67110.1 48.529 136 48 3 266 399 48 163 3.20e-26 106
MsaG013338 AT4G28800.2 28.541 473 216 18 39 475 31 417 4.57e-26 111
MsaG013338 AT4G28815.2 40.217 184 75 8 313 485 53 212 4.42e-25 103
MsaG013338 AT4G36930.1 73.611 72 17 1 331 400 197 268 6.87e-25 106
MsaG013338 AT4G28815.1 42.391 184 71 10 313 485 129 288 9.73e-25 105
MsaG013338 AT4G28790.1 28.993 407 217 15 32 420 18 370 9.82e-25 107
MsaG013338 AT2G46970.2 41.520 171 79 7 269 426 136 298 3.29e-24 105
MsaG013338 AT2G46970.3 41.379 174 81 7 266 426 142 307 3.51e-24 105
MsaG013338 AT2G46970.1 41.520 171 79 7 269 426 167 329 4.42e-24 105
MsaG013338 AT4G00050.2 53.271 107 39 3 285 387 68 167 2.14e-22 98.2
MsaG013338 AT4G00050.3 53.271 107 39 3 285 387 170 269 5.88e-22 98.2
MsaG013338 AT4G00050.1 53.271 107 39 3 285 387 170 269 6.30e-22 98.6
MsaG013338 AT2G24260.2 58.730 63 26 0 327 389 37 99 1.22e-18 85.9
MsaG013338 AT2G24260.1 58.730 63 26 0 327 389 140 202 5.47e-18 85.9
MsaG013338 AT5G58010.1 54.054 74 31 1 316 389 93 163 6.11e-18 85.1
MsaG013338 AT4G28790.2 27.446 368 199 12 32 385 18 331 8.30e-18 85.1
MsaG013338 AT4G30980.1 57.143 63 27 0 327 389 132 194 1.41e-17 84.0
MsaG013338 AT4G30980.2 57.143 63 27 0 327 389 180 242 3.78e-17 83.6
MsaG013338 AT3G62090.1 49.474 95 45 3 320 412 160 253 8.57e-17 82.4
MsaG013338 AT3G62090.2 49.474 95 45 3 320 412 177 270 1.08e-16 82.4
MsaG013338 AT4G28811.1 38.679 212 102 5 290 486 329 527 1.30e-16 83.2
MsaG013338 AT1G26260.3 33.333 165 92 5 272 418 103 267 1.37e-14 75.5
MsaG013338 AT1G26260.4 33.333 165 92 5 272 418 154 318 1.48e-14 75.9
MsaG013338 AT1G26260.1 33.333 165 92 5 272 418 154 318 1.48e-14 75.9
MsaG013338 AT1G26260.6 33.333 165 92 5 272 418 154 318 1.48e-14 75.9
MsaG013338 AT1G26260.2 33.333 165 92 5 272 418 154 318 1.48e-14 75.9
MsaG013338 AT1G26260.5 33.333 165 92 5 272 418 132 296 1.68e-14 75.5
MsaG013338 AT1G68240.1 38.710 124 67 4 327 444 63 183 1.12e-13 70.1
MsaG013338 AT5G61270.2 46.078 102 53 2 299 399 47 147 2.46e-13 70.9
MsaG013338 AT5G61270.3 46.078 102 53 2 299 399 47 147 2.46e-13 70.9
MsaG013338 AT5G61270.1 46.078 102 53 2 299 399 135 235 2.65e-13 72.0
MsaG013338 AT4G33880.1 35.652 115 57 4 308 415 247 351 5.05e-13 70.9
MsaG013338 AT1G68240.2 39.091 110 61 3 327 430 63 172 5.19e-13 67.8
MsaG013338 AT5G43175.1 40.789 76 40 1 319 389 126 201 5.25e-13 68.9
MsaG013338 AT1G02340.1 36.667 120 52 3 293 412 113 208 6.36e-13 70.1
MsaG013338 AT1G02340.2 36.667 120 52 3 293 412 106 201 6.76e-13 69.7
MsaG013338 AT1G27740.1 36.449 107 59 3 303 403 148 251 1.53e-12 68.2
MsaG013338 AT2G14760.1 38.710 93 49 2 302 389 217 306 1.69e-12 68.9
MsaG013338 AT5G50915.1 33.333 147 56 5 317 427 116 256 3.81e-12 67.4
MsaG013338 AT5G50915.2 33.333 147 56 5 317 427 116 256 3.81e-12 67.4
MsaG013338 AT5G50915.3 33.333 147 56 5 317 427 116 256 4.21e-12 67.0
MsaG013338 AT5G50915.4 33.333 147 56 5 317 427 116 256 4.21e-12 67.0
MsaG013338 AT1G68920.1 36.170 141 79 6 327 458 305 443 6.49e-12 68.2
MsaG013338 AT1G68920.4 36.170 141 79 6 327 458 305 443 6.49e-12 68.2
MsaG013338 AT1G68920.2 36.170 141 79 6 327 458 305 443 6.49e-12 68.2
MsaG013338 AT1G68920.3 36.170 141 79 6 327 458 304 442 7.13e-12 68.2
MsaG013338 AT2G18300.2 30.808 198 113 7 286 460 129 325 9.26e-12 67.0
MsaG013338 AT3G23690.1 34.028 144 86 4 251 389 117 256 9.39e-12 67.4
MsaG013338 AT2G18300.3 30.808 198 113 7 286 460 129 325 9.79e-12 67.0
MsaG013338 AT2G14760.3 42.647 68 34 1 327 389 252 319 1.78e-11 66.2
MsaG013338 AT4G34530.1 48.438 64 32 1 327 389 174 237 1.97e-11 65.9
MsaG013338 AT3G07340.2 39.216 102 43 3 304 389 225 323 2.21e-11 66.2
MsaG013338 AT3G07340.1 39.216 102 43 3 304 389 225 323 2.66e-11 66.2
MsaG013338 AT5G67110.2 40.367 109 44 3 266 374 48 135 4.22e-11 61.6
MsaG013338 AT5G48560.2 50.000 64 31 1 327 389 303 366 5.31e-11 65.5
MsaG013338 AT5G48560.1 50.000 64 31 1 327 389 303 366 5.69e-11 65.5
MsaG013338 AT4G36540.1 36.697 109 60 3 289 389 99 206 6.77e-11 63.9
MsaG013338 AT4G36540.2 36.697 109 60 3 289 389 99 206 7.03e-11 63.9
MsaG013338 AT2G18300.1 30.612 196 114 5 286 460 129 323 8.23e-11 63.9
MsaG013338 AT5G67110.3 37.500 136 41 4 266 399 48 141 8.64e-11 61.6
MsaG013338 AT1G10120.2 48.438 64 32 1 327 389 208 271 8.75e-11 64.3
MsaG013338 AT1G10120.1 48.438 64 32 1 327 389 208 271 8.75e-11 64.3

Find 112 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCGTTCCTGATTGGAATTT+TGG 0.193756 3:+49618525 MsaT013338.1:CDS
TACTTCATCTTCTGGTGGTT+CGG 0.273371 3:+49619392 MsaT013338.1:CDS
GAACTTGTTTCTTATTTGTT+TGG 0.281722 3:-49618753 None:intergenic
TGATGCTGTGGGTGGCAAAA+TGG 0.294348 3:+49620979 MsaT013338.1:CDS
CATTGGTCCACTGCTATTGC+TGG 0.300560 3:-49620936 None:intergenic
TGTTCAAGTGGATCCTCAAT+AGG 0.303381 3:-49618883 None:intergenic
AGGCACCTAAAACAGGATTT+TGG 0.303664 3:-49620390 None:intergenic
TAAATCAGCCGTGAGGAAAA+AGG 0.304657 3:+49619614 MsaT013338.1:CDS
ACATCATTTCTGACTTGTTC+AGG 0.332564 3:-49619312 None:intergenic
ATCACTTCAGTTACAACTTC+AGG 0.334793 3:+49620095 MsaT013338.1:CDS
TCGGCATGAGAATGGGAAAT+TGG 0.337535 3:+49619350 MsaT013338.1:CDS
AAGGTGGAAGTTCAGATAAA+AGG 0.339660 3:-49618921 None:intergenic
GATGCAAAATCCTGCTCTTT+CGG 0.342576 3:+49620429 MsaT013338.1:CDS
GGGTATCAAGCAACGGTGTT+TGG 0.343568 3:+49619271 MsaT013338.1:CDS
ATGAACTTGTGGAGCTTCTA+TGG 0.349007 3:+49618704 MsaT013338.1:CDS
CATCTTGATCCTGTTGGACT+TGG 0.357855 3:-49619242 None:intergenic
ACTTCATCTTCTGGTGGTTC+GGG 0.366507 3:+49619393 MsaT013338.1:CDS
AAGATGATGAAACTGTTTCA+TGG 0.378684 3:+49618848 MsaT013338.1:CDS
GTTGTTTCTTTGCAATGAAT+CGG 0.393694 3:-49619040 None:intergenic
GGCATCTCAGCGGTCAGGTT+CGG 0.395919 3:+49619635 MsaT013338.1:CDS
ATGTTTGCTGTTCCACTCAT+TGG 0.397921 3:-49620953 None:intergenic
TGCTTACATCTTGATCCTGT+TGG 0.402600 3:-49619248 None:intergenic
GACGGATCCAGAGGCATTCT+CGG 0.403301 3:-49620328 None:intergenic
GTCATGACTTCTTGTAGATA+AGG 0.410497 3:-49619439 None:intergenic
GGTGCAAATAGGTACTGGTT+TGG 0.413855 3:+49618482 MsaT013338.1:intron
TCAGCACTATATGTCACAAA+TGG 0.421098 3:+49620252 MsaT013338.1:CDS
ATAGAAGCTCCACAAGTTCA+TGG 0.431688 3:-49618702 None:intergenic
TCTTATGCAAAATGCTTCTC+AGG 0.438287 3:+49620480 MsaT013338.1:CDS
TTGAAAGACTCGACGTTACA+AGG 0.440966 3:-49618940 None:intergenic
ACAATTCCTCGGCATGAGAA+TGG 0.443028 3:+49619342 MsaT013338.1:CDS
GAATGGGAAATTGGAGATGT+TGG 0.444363 3:+49619359 MsaT013338.1:CDS
TGAACAACACCGTTCCTGAT+TGG 0.444912 3:+49618517 MsaT013338.1:CDS
TTGTTTCTTTGCAATGAATC+GGG 0.448535 3:-49619039 None:intergenic
CGGAAGCAACCAAGTCCAAC+AGG 0.451058 3:+49619233 MsaT013338.1:CDS
CCATATCTGTACATATTCAT+TGG 0.451704 3:-49620875 None:intergenic
GTAGATGCTAAAGTAACATT+GGG 0.457098 3:-49619114 None:intergenic
TGGCTCGTTAATGTCTGGTT+TGG 0.458380 3:-49620370 None:intergenic
TAGTTGAAGGCACCTAAAAC+AGG 0.459214 3:-49620397 None:intergenic
CTATATGTCACAAATGGGTA+TGG 0.459276 3:+49620258 MsaT013338.1:CDS
GGAGCAATATGCTCGTTACA+TGG 0.460185 3:+49620450 MsaT013338.1:CDS
TAATCAAAAGAAGCAACCTA+TGG 0.462757 3:+49618566 MsaT013338.1:CDS
CAATTCCTCGGCATGAGAAT+GGG 0.468759 3:+49619343 MsaT013338.1:CDS
AGAAAAGTTTACAACCTTGC+CGG 0.469128 3:-49619076 None:intergenic
GTTCAAGTGGATCCTCAATA+GGG 0.473250 3:-49618882 None:intergenic
AACAGGATCAAGATGTAAGC+AGG 0.473432 3:+49619250 MsaT013338.1:CDS
GATCCTCAATAGGGTATTGT+TGG 0.475150 3:-49618873 None:intergenic
TTCTGTTAGGTGATGTGGAT+GGG 0.477428 3:+49620196 MsaT013338.1:intron
GAACATAATTCTTGTTCAAG+TGG 0.477770 3:-49618895 None:intergenic
TAGGTGATGTGGATGGGATC+TGG 0.479810 3:+49620202 MsaT013338.1:intron
AACAACGATTTGTGTGGATC+CGG 0.480481 3:+49619057 MsaT013338.1:CDS
ATAGGAAATTCCTGAACAAA+AGG 0.481459 3:-49618988 None:intergenic
GCAATTACCGAGAATGCCTC+TGG 0.483577 3:+49620321 MsaT013338.1:CDS
TGTTCAGGAATTTCCTATGT+CGG 0.485624 3:+49618993 MsaT013338.1:CDS
CCAATGAATATGTACAGATA+TGG 0.491789 3:+49620875 MsaT013338.1:CDS
TGTAGATGCTAAAGTAACAT+TGG 0.495901 3:-49619115 None:intergenic
CATGACACCGATGATGCTAC+CGG 0.496261 3:+49620225 MsaT013338.1:CDS
TTTCTGTTAGGTGATGTGGA+TGG 0.500303 3:+49620195 MsaT013338.1:intron
GATGCTGTGGGTGGCAAAAT+GGG 0.501876 3:+49620980 MsaT013338.1:CDS
GGTGGTTCGGGAAGTAGTCT+TGG 0.502929 3:+49619405 MsaT013338.1:CDS
TCACTCCCAAAATTCCAATC+AGG 0.503469 3:-49618531 None:intergenic
AATCAAAAGAAGCAACCTAT+GGG 0.506530 3:+49618567 MsaT013338.1:CDS
ATTTCTGACTTGTTCAGGCT+CGG 0.509459 3:-49619307 None:intergenic
ACTCATACCTCACAGTAGTA+AGG 0.524016 3:+49619830 MsaT013338.1:CDS
CAGCACTATATGTCACAAAT+GGG 0.528954 3:+49620253 MsaT013338.1:CDS
AGTGCATAATCTTTCAGAAA+GGG 0.530854 3:+49619680 MsaT013338.1:CDS
GACATATAGTGCTGATATCC+CGG 0.534372 3:-49620244 None:intergenic
GTTACTTTAGCATCTACAAA+CGG 0.535195 3:+49619120 MsaT013338.1:CDS
CAAAGCATCAATGTTAGAAG+AGG 0.538478 3:+49620056 MsaT013338.1:CDS
TGTCTGGTTTGGTGTCTGAC+AGG 0.541123 3:-49620359 None:intergenic
GGCATTCTCGGTAATTGCAT+CGG 0.543563 3:-49620316 None:intergenic
TGAAACCTCGGAGCCGACAT+AGG 0.544656 3:-49619006 None:intergenic
TGATATCCCGGTAGCATCAT+CGG 0.547358 3:-49620232 None:intergenic
GCATATTGCTCCGAAAGAGC+AGG 0.550353 3:-49620439 None:intergenic
CAAAGAAACAACGATTTGTG+TGG 0.566041 3:+49619051 MsaT013338.1:CDS
TGGTGTCTGACAGGAAGAAA+CGG 0.568009 3:-49620350 None:intergenic
ATTGGTCCACTGCTATTGCT+GGG 0.572900 3:-49620935 None:intergenic
CGATTTGTGTGGATCCGGCA+AGG 0.573793 3:+49619062 MsaT013338.1:CDS
GTGGAGCTTCTATGGCAGAA+TGG 0.575038 3:+49618712 MsaT013338.1:CDS
AGCGGTCAGGTTCGGCTCGT+AGG 0.585796 3:+49619643 MsaT013338.1:CDS
CCAGAAGATGAAGTAAAAGC+AGG 0.586941 3:-49619384 None:intergenic
GATCCAACAATACCCTATTG+AGG 0.587994 3:+49618870 MsaT013338.1:CDS
AAGTGCATAATCTTTCAGAA+AGG 0.591388 3:+49619679 MsaT013338.1:CDS
TATATGTCACAAATGGGTAT+GGG 0.594345 3:+49620259 MsaT013338.1:CDS
CCCAAAATTCCAATCAGGAA+CGG 0.594898 3:-49618526 None:intergenic
AATTTCCCATTCTCATGCCG+AGG 0.596584 3:-49619348 None:intergenic
ATGACACCGATGATGCTACC+GGG 0.598634 3:+49620226 MsaT013338.1:CDS
AGCAAACATTAATGATGCTG+TGG 0.601820 3:+49620967 MsaT013338.1:CDS
CAGGCTGGACCATGAACTTG+TGG 0.607340 3:+49618693 MsaT013338.1:intron
GATGGATGTTGAAGATTCAG+TGG 0.609243 3:+49619476 MsaT013338.1:CDS
GAGCAATATGCTCGTTACAT+GGG 0.614005 3:+49620451 MsaT013338.1:CDS
GGAAATTCCTGAACAAAAGG+CGG 0.618190 3:-49618985 None:intergenic
ATGTTCAGAAGACAATTCCT+CGG 0.630703 3:+49619331 MsaT013338.1:CDS
GAGTGTTCGACGATGACAGT+TGG 0.633825 3:+49619198 MsaT013338.1:CDS
GGAACATGATGATGAAACCT+CGG 0.639628 3:-49619018 None:intergenic
ATATTGAACACACACCCCAT+AGG 0.642122 3:-49618582 None:intergenic
ACAGGATCAAGATGTAAGCA+GGG 0.649737 3:+49619251 MsaT013338.1:CDS
AGATTCAGTGGAACAAAGCG+AGG 0.656069 3:+49619488 MsaT013338.1:CDS
GTAAGCAGGGTATCAAGCAA+CGG 0.657240 3:+49619264 MsaT013338.1:CDS
ACAGTTGGTTCGAGTTATTG+CGG 0.658618 3:+49619213 MsaT013338.1:CDS
GAAGAAACGGACGGATCCAG+AGG 0.660505 3:-49620337 None:intergenic
AACATTAATGATGCTGTGGG+TGG 0.661408 3:+49620971 MsaT013338.1:CDS
GTCTGACAGGAAGAAACGGA+CGG 0.668045 3:-49620346 None:intergenic
AATAGCAGTGGACCAATGAG+TGG 0.668226 3:+49620941 MsaT013338.1:CDS
GGTCCACTGCTATTGCTGGG+TGG 0.669356 3:-49620932 None:intergenic
ATTCCACCCAGCAATAGCAG+TGG 0.670400 3:+49620929 MsaT013338.1:CDS
AATTTCCTATGTCGGCTCCG+AGG 0.681257 3:+49619001 MsaT013338.1:CDS
ATCAAAAGAAGCAACCTATG+GGG 0.695787 3:+49618568 MsaT013338.1:CDS
GCAAACATTAATGATGCTGT+GGG 0.698935 3:+49620968 MsaT013338.1:CDS
GATTATGCACTTCAGCAGCG+CGG 0.709911 3:-49619668 None:intergenic
TGACAAACCTTACTACTGTG+AGG 0.713524 3:-49619837 None:intergenic
AAAGACTCGACGTTACAAGG+TGG 0.729579 3:-49618937 None:intergenic
CAGAACTTAAATCAGCCGTG+AGG 0.748263 3:+49619607 MsaT013338.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 49618053 49621183 49618053 ID=MsaG013338
Chr3 mRNA 49618053 49621183 49618053 ID=MsaT013338.1;Parent=MsaG013338
Chr3 exon 49618053 49618065 49618053 ID=MsaT013338.1.exon1;Parent=MsaT013338.1
Chr3 CDS 49618053 49618065 49618053 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Chr3 exon 49618493 49618589 49618493 ID=MsaT013338.1.exon2;Parent=MsaT013338.1
Chr3 CDS 49618493 49618589 49618493 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Chr3 exon 49618696 49619509 49618696 ID=MsaT013338.1.exon3;Parent=MsaT013338.1
Chr3 CDS 49618696 49619509 49618696 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Chr3 exon 49619603 49619701 49619603 ID=MsaT013338.1.exon4;Parent=MsaT013338.1
Chr3 CDS 49619603 49619701 49619603 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Chr3 exon 49619786 49619851 49619786 ID=MsaT013338.1.exon5;Parent=MsaT013338.1
Chr3 CDS 49619786 49619851 49619786 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Chr3 exon 49620051 49620116 49620051 ID=MsaT013338.1.exon6;Parent=MsaT013338.1
Chr3 CDS 49620051 49620116 49620051 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Chr3 exon 49620205 49620501 49620205 ID=MsaT013338.1.exon7;Parent=MsaT013338.1
Chr3 CDS 49620205 49620501 49620205 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Chr3 exon 49620875 49621001 49620875 ID=MsaT013338.1.exon8;Parent=MsaT013338.1
Chr3 CDS 49620875 49621001 49620875 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Chr3 exon 49621179 49621183 49621179 ID=MsaT013338.1.exon9;Parent=MsaT013338.1
Chr3 CDS 49621179 49621183 49621179 ID=cds.MsaT013338.1;Parent=MsaT013338.1
Gene Sequence

>MsaT013338.1

ATGCAATCTTTATGTACTGGTTTGGTTCAGTTAGCGATGAACAACACCGTTCCTGATTGGAATTTTGGGAGTGATAGTTTTGTCACTAATCAAAAGAAGCAACCTATGGGGCTGGACCATGAACTTGTGGAGCTTCTATGGCAGAATGGTCATGTAGTATTGAATAGCCAAACAAATAAGAAACAAGTTCTGAATTCAAATACAATCAATTCAAGACAAGTTCATAAGAATCTTCAATCAACAACTTTAAGCAACTTGATTCAAGATGATGAAACTGTTTCATGGATCCAACAATACCCTATTGAGGATCCACTTGAACAAGAATTATGTTCAAACCTTTTATCTGAACTTCCACCTTGTAACGTCGAGTCTTTCAATTCGCAACCGACGAATACAAAACCGCCTTTTGTTCAGGAATTTCCTATGTCGGCTCCGAGGTTTCATCATCATGTTCCCGATTCATTGCAAAGAAACAACGATTTGTGTGGATCCGGCAAGGTTGTAAACTTTTCTCACTTTTCAAGACTTCCCAATGTTACTTTAGCATCTACAAACGGCGATGCAAATTTTAGAGACAAAATTACGGGTAATCTGTCACAATGTGATGTTAGAGAGTGTTCGACGATGACAGTTGGTTCGAGTTATTGCGGAAGCAACCAAGTCCAACAGGATCAAGATGTAAGCAGGGTATCAAGCAACGGTGTTTGGACTAATTTATCGACCGAGCCTGAACAAGTCAGAAATGATGTTCAGAAGACAATTCCTCGGCATGAGAATGGGAAATTGGAGATGTTGGAACCTGCTTTTACTTCATCTTCTGGTGGTTCGGGAAGTAGTCTTGGAAAAACTTGTTCCTTATCTACAAGAAGTCATGACAAAAAGAGGAAAGTGATGGATGTTGAAGATTCAGTGGAACAAAGCGAGGATACAGAACTTAAATCAGCCGTGAGGAAAAAGGCATCTCAGCGGTCAGGTTCGGCTCGTAGGAACCGCGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGGCGAAGAGATAGAATTAATGAGAAGATGAAAGCATTACAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTGATGTGGATGGGATCTGGCATGACACCGATGATGCTACCGGGATATCAGCACTATATGTCACAAATGGGTATGGGAATGACTACACCTTCGTTTCCTCCACTTCAAAATCCGATGCAATTACCGAGAATGCCTCTGGATCCGTCCGTTTCTTCCTGTCAGACACCAAACCAGACATTAACGAGCCAAAATCCTGTTTTAGGTGCCTTCAACTACCAAAATCAGATGCAAAATCCTGCTCTTTCGGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAGCTGTACAAAATAGTCAAACAATGATTCCACCCAGCAATAGCAGTGGACCAATGAGTGGAACAGCAAACATTAATGATGCTGTGGGTGGCAAAATGGGTTAA

Protein sequence

>MsaT013338.1

MQSLCTGLVQLAMNNTVPDWNFGSDSFVTNQKKQPMGLDHELVELLWQNGHVVLNSQTNKKQVLNSNTINSRQVHKNLQSTTLSNLIQDDETVSWIQQYPIEDPLEQELCSNLLSELPPCNVESFNSQPTNTKPPFVQEFPMSAPRFHHHVPDSLQRNNDLCGSGKVVNFSHFSRLPNVTLASTNGDANFRDKITGNLSQCDVRECSTMTVGSSYCGSNQVQQDQDVSRVSSNGVWTNLSTEPEQVRNDVQKTIPRHENGKLEMLEPAFTSSSGGSGSSLGKTCSLSTRSHDKKRKVMDVEDSVEQSEDTELKSAVRKKASQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMLPGYQHYMSQMGMGMTTPSFPPLQNPMQLPRMPLDPSVSSCQTPNQTLTSQNPVLGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQAVQNSQTMIPPSNSSGPMSGTANINDAVGGKMG*