AlfalfaGEDB | MsaG013352

M. sativa ssp. caerulea / MsaG013352

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013352	KEH33670.1	86.500	200	27	0	1	200	176	375	2.65e-121	358

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013352	tr\|A0A072V670\|A0A072V670_MEDTR	86.500	200	27	0	1	200	176	375	1.27e-121	358

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013352	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013352	MtrunA17_Chr4g0001831	75.500	200	49	0	1	200	174	373	1.03e-107	313
MsaG013352	MtrunA17_Chr2g0286191	39.683	189	110	3	8	195	172	357	6.41e-38	134
MsaG013352	MtrunA17_Chr2g0295761	37.500	192	117	2	4	194	197	386	3.44e-35	127
MsaG013352	MtrunA17_Chr2g0286221	40.741	162	92	3	39	199	13	171	3.71e-35	122
MsaG013352	MtrunA17_Chr4g0067121	33.862	189	123	1	7	195	192	378	3.35e-34	125
MsaG013352	MtrunA17_Chr2g0296301	33.854	192	127	0	3	194	172	363	4.46e-34	124
MsaG013352	MtrunA17_Chr2g0296131	37.662	154	96	0	42	195	7	160	5.94e-33	116
MsaG013352	MtrunA17_Chr2g0296171	32.308	195	130	1	6	200	206	398	6.79e-31	116
MsaG013352	MtrunA17_Chr2g0296291	32.979	188	124	1	8	195	211	396	9.20e-31	116
MsaG013352	MtrunA17_Chr2g0295731	32.979	188	124	1	8	195	190	375	9.57e-30	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013352	AT5G07900.1	40.625	192	113	1	6	196	210	401	3.04e-52	172
MsaG013352	AT1G21150.3	36.735	196	120	3	2	194	156	350	2.63e-36	130
MsaG013352	AT1G21150.1	36.735	196	120	3	2	194	192	386	5.79e-36	130
MsaG013352	AT1G21150.2	36.735	196	120	3	2	194	256	450	1.43e-35	130
MsaG013352	AT1G62010.1	31.532	222	109	5	2	181	164	384	3.54e-25	101
MsaG013352	AT1G61970.2	32.407	216	107	5	2	180	186	399	2.87e-23	96.3
MsaG013352	AT1G61970.7	32.407	216	107	5	2	180	186	399	2.87e-23	96.3
MsaG013352	AT1G61970.6	32.407	216	107	5	2	180	186	399	2.87e-23	96.3
MsaG013352	AT1G61970.3	32.407	216	107	5	2	180	186	399	2.87e-23	96.3
MsaG013352	AT1G61970.5	32.407	216	107	5	2	180	186	399	2.87e-23	96.3

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Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAATAAGACATCAA+AGG	0.606684	3:+49946452	None:intergenic
AAAGATGGACAAAGAGAATT+GGG	0.462885	3:-49946411	MsaT013352.1:CDS
AACTTCTTGGTGAACGATGT+GGG	0.606341	3:-49946272	MsaT013352.1:CDS
AAGCTACGGATCAGAATAGC+AGG	0.501991	3:+49946221	None:intergenic
AATGGTAAATCTTTCTGAAA+TGG	0.311445	3:+49946068	None:intergenic
ACTTCAAGTAATCGCAAAGA+TGG	0.569887	3:-49946426	MsaT013352.1:CDS
AGCTACGGATCAGAATAGCA+GGG	0.695511	3:+49946222	None:intergenic
AGTAGAGAAATGGAACATTG+AGG	0.673786	3:+49946560	None:intergenic
ATCTTAATAACTGCACATCT+AGG	0.371337	3:+49946182	None:intergenic
ATGCTTGGCGAACGCTACAT+TGG	0.474402	3:+49946523	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	49946031	49946633	49946031	ID=MsaG013352
Chr3	mRNA	49946031	49946633	49946031	ID=MsaT013352.1;Parent=MsaG013352
Chr3	exon	49946031	49946633	49946031	ID=MsaT013352.1.exon1;Parent=MsaT013352.1
Chr3	CDS	49946031	49946633	49946031	ID=cds.MsaT013352.1;Parent=MsaT013352.1

Gene Sequence

>MsaT013352.1

ATGGTTAATCATTCTGTTGCAAACATTGAGGTTTTGAGAAAACTTGGTGTGCCTCAATGTTCCATTTCTCTACTGGTATCCAATTTTCCCAATGTAGCGTTCGCCAAGCATTCTAGATTTGTTGAGGCTGTTAATTCAGTCAAGGAAATGGGGTTTGATCCTTTGATGTCTTATTTTGTTTTGGCACTTCAAGTAATCGCAAAGATGGACAAAGAGAATTGGGAATCAAAAATCAAGATTTTTGAGAGGTGGGGTTGGTCGAGAGATATGTGTCTTTTGGCTTTCCAAAAACAGCCGAATTGTATGATGATTTCAGAAAAAAAGATTATGAAAACAATGAACTTCTTGGTGAACGATGTGGGTCTTACACCACAAGACATTGTAGGATGCCCTGCTATTCTGATCCGTAGCTTGGAGAAGATACTTATCCCTAGATGTGCAGTTATTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTAGTTTGCGCATAAGTACCTTTATTATTATGGCTGAGAAAACATTTTTGGAGCGATATGTAACCCCATTTCAGAAAGATTTACCATTGTTATTGGATGCATATAAAGGTCAGAATTCAGATTGA

Protein sequence

>MsaT013352.1

MVNHSVANIEVLRKLGVPQCSISLLVSNFPNVAFAKHSRFVEAVNSVKEMGFDPLMSYFVLALQVIAKMDKENWESKIKIFERWGWSRDMCLLAFQKQPNCMMISEKKIMKTMNFLVNDVGLTPQDIVGCPAILIRSLEKILIPRCAVIKILKSRGLIKSSLRISTFIIMAEKTFLERYVTPFQKDLPLLLDAYKGQNSD*