AlfalfaGEDB | MsaG013427

M. sativa ssp. caerulea / MsaG013427

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013427	XP_003599843.1	97.619	504	12	0	1	504	1	504	0.0	1010

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013427	sp\|Q9SJG2\|Y2296_ARATH	71.944	499	126	5	1	491	1	493	0.0	718

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013427	tr\|G7IXW6\|G7IXW6_MEDTR	97.619	504	12	0	1	504	1	504	0.0	1010

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000583	MsaG013427	0.819665	1.803477e-52	3.931219e-50
MsaG000694	MsaG013427	0.817081	6.899754e-52	1.406470e-49
MsaG001936	MsaG013427	0.824145	1.674304e-53	4.114522e-51
MsaG002781	MsaG013427	0.815313	1.706182e-51	3.324434e-49
MsaG003111	MsaG013427	0.840137	1.925491e-57	7.549089e-55
MsaG003896	MsaG013427	0.810853	1.605470e-50	2.799303e-48
MsaG004005	MsaG013427	0.810420	1.989600e-50	3.432775e-48
MsaG005052	MsaG013427	0.828477	1.574377e-54	4.363577e-52
MsaG005613	MsaG013427	0.802428	9.467973e-49	1.352578e-46
MsaG005836	MsaG013427	0.804096	4.291109e-49	6.370942e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013427	MtrunA17_Chr3g0096351	97.619	504	12	0	1	504	1	504	0.0	1010
MsaG013427	MtrunA17_Chr5g0443121	77.237	514	95	8	1	503	1	503	0.0	771
MsaG013427	MtrunA17_Chr7g0271451	69.118	476	127	7	1	459	1	473	0.0	646
MsaG013427	MtrunA17_Chr4g0069251	66.388	479	152	5	1	475	1	474	0.0	632
MsaG013427	MtrunA17_Chr2g0302631	66.329	493	152	9	7	490	5	492	0.0	615
MsaG013427	MtrunA17_Chr8g0348451	56.087	460	159	6	7	464	9	427	7.02e-169	485
MsaG013427	MtrunA17_Chr7g0248491	53.632	468	195	3	7	474	9	454	1.77e-166	479
MsaG013427	MtrunA17_Chr5g0402071	51.186	506	226	6	2	503	4	492	2.94e-164	474
MsaG013427	MtrunA17_Chr3g0144551	65.472	307	106	0	161	467	114	420	5.12e-152	441
MsaG013427	MtrunA17_Chr4g0034931	63.385	325	115	1	159	483	118	438	1.12e-151	441

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG013427	AT3G59110.1	71.401	521	122	9	1	504	1	511	741
MsaG013427	AT2G42960.3	71.944	499	126	5	1	491	1	493	718
MsaG013427	AT2G42960.5	71.944	499	126	5	1	491	1	493	718
MsaG013427	AT2G42960.4	71.944	499	126	5	1	491	1	493	718
MsaG013427	AT2G42960.1	71.944	499	126	5	1	491	1	493	718
MsaG013427	AT1G56720.3	66.740	457	148	4	5	459	3	457	610
MsaG013427	AT1G56720.1	66.740	457	148	4	5	459	3	457	610
MsaG013427	AT1G56720.2	66.740	457	148	4	5	459	3	457	610
MsaG013427	AT1G56720.4	66.740	457	148	4	5	459	3	457	610
MsaG013427	AT1G09440.1	65.000	440	144	4	19	457	3	433	573

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Find 110 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTCCCATTACTCTGG+TGG	0.608607	3:-52653513	None:intergenic
AACAAGAAGGGCACGCTTTA+AGG	0.243087	3:-52653933	None:intergenic
AACTGTTAAGAAGCAGTATA+TGG	0.401520	3:+52652335	MsaT013427.1:CDS
AACTTAGAACAATGGTTACA+TGG	0.469294	3:+52652968	MsaT013427.1:CDS
AAGAGTGATATTTACAGCTT+TGG	0.354743	3:+52653662	MsaT013427.1:CDS
AAGATTGATCAATGGATCTG+AGG	0.626672	3:+52652506	MsaT013427.1:CDS
AAGCCAGTATTAGCATACTC+TGG	0.599848	3:-52653629	None:intergenic
AAGGAGAGCTGAGGAAGTTG+TGG	0.563509	3:+52653877	MsaT013427.1:CDS
AATGCAAAGGTTTCTGATTT+TGG	0.093968	3:+52653452	MsaT013427.1:CDS
AATGGTTACATGGGGCAATG+AGG	0.632832	3:+52652978	MsaT013427.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	52651913	52654871	52651913	ID=MsaG013427
Chr3	mRNA	52651913	52654871	52651913	ID=MsaT013427.1;Parent=MsaG013427
Chr3	exon	52651913	52652556	52651913	ID=MsaT013427.1.exon1;Parent=MsaT013427.1
Chr3	CDS	52651913	52652556	52651913	ID=cds.MsaT013427.1;Parent=MsaT013427.1
Chr3	exon	52652664	52652768	52652664	ID=MsaT013427.1.exon2;Parent=MsaT013427.1
Chr3	CDS	52652664	52652768	52652664	ID=cds.MsaT013427.1;Parent=MsaT013427.1
Chr3	exon	52652937	52653059	52652937	ID=MsaT013427.1.exon3;Parent=MsaT013427.1
Chr3	CDS	52652937	52653059	52652937	ID=cds.MsaT013427.1;Parent=MsaT013427.1
Chr3	exon	52653367	52653537	52653367	ID=MsaT013427.1.exon4;Parent=MsaT013427.1
Chr3	CDS	52653367	52653537	52653367	ID=cds.MsaT013427.1;Parent=MsaT013427.1
Chr3	exon	52653619	52653748	52653619	ID=MsaT013427.1.exon5;Parent=MsaT013427.1
Chr3	CDS	52653619	52653748	52653619	ID=cds.MsaT013427.1;Parent=MsaT013427.1
Chr3	exon	52653839	52654048	52653839	ID=MsaT013427.1.exon6;Parent=MsaT013427.1
Chr3	CDS	52653839	52654048	52653839	ID=cds.MsaT013427.1;Parent=MsaT013427.1
Chr3	exon	52654737	52654871	52654737	ID=MsaT013427.1.exon7;Parent=MsaT013427.1
Chr3	CDS	52654737	52654871	52654737	ID=cds.MsaT013427.1;Parent=MsaT013427.1

Gene Sequence

>MsaT013427.1

ATGTCTTCCAACGGTTCTTTGAAAATGGAATTGTCGAAGAAGACTTCATTTTTGGGTTTGAGATTATGGGTTTTGATAGGAATTGGTGTTTTTGCATTTATAGTTCTGATTCTTTGTTTGTTATCTATATGGATAACGTTTCGGAGAAAAACAAGGAGGTCTGTAGACAAGTACTCGTTATCTCAAATACCGCACGTCTCGAAGGATATTAAAGTTGACAAGGTTGAAGTGCAACCTTCTAACGATCATGTTGATAGTGTGTCTATTCATGTCCATGACAACATGACAAGTGATAAGAATTCGGATAAGTTGTTTGTTCATTTGAGCAAATCCAGTGATCCTGATAATATCAGTCAGTGTAGTTCGATTTATCACCACGAGAGAGGATTAAGTTTAATGTCAGCAGAGGATGGAAACTTTGGAACTGTTAAGAAGCAGTATATGGTAACTGCATCTCCTCTGGTTGGCTTGCCTGAAGGTTCTCATCTTGGATGGGGTCATTGGTTCACACTTAGAGATCTCGAACTTTCGACTAACCGTTTCTCGGCTGAGAATGTTATTGGTGAAGGCGGATATGGAGTTGTTTATAAGGGAAGATTGATCAATGGATCTGAGGTGGCAGTGAAGCGACTTCTTAACAACTTGGGACAGGCAGAGAAAGAATTCAGGGTTGAAGTCGAGGCTATAGGTCATGTCAGACATAAAAATCTTGTGCGCTTACTTGGATTTTGCGTAGAAGGAGTTCACAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGCAATGAGGCAACATGGAGTACTTACGTGGGAAGCTCGAATGAAAGTTATTCTCGGCACAGCGAAAGCGCTTGCTTATTTTCATGAAGCAATAGAACCAAAAGTTGTTCACCGAGATATAAAGTCGAGCAACATTTTAATTGATAGCGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTAGCCAAACTTTTGGAGTCAGGAGAAAGTCACATAACCACCAGAGTAATGGGAACATTTGGTTACGTTGCACCAGAGTATGCTAATACTGGCTTGTTAAACGAGAAGAGTGATATTTACAGCTTTGGTGTTCTCCTACTAGAAGCGATTACCGGAAGGGACCCTGTAGACTATACACGTCCCGCCAACGAGGTGAATCTTGTTGAGTGGCTGAAGATGATGGTGGGGTCAAGGAGAGCTGAGGAAGTTGTGGACTCTAGCCTTGAAGTGAAACCACCAACACGTGCCTTAAAGCGTGCCCTTCTTGTTGCATTTAGGTGTGTTGATCCTGATTCAGAGAAGAGACCTAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCTGATGAATATCCATTCAGAGAGGATCGAAGGAATAGAAAAAGCCGCACCGCAAGCATAGACATTGTTGAATCTCTGAAGGATATCTCTGGTCCTTCTGATACTGCTGATAAGACGAAAGGTTCTGAAGAATGTGCACCTGAGACAACTCAAGGGTAG

Protein sequence

>MsaT013427.1

MSSNGSLKMELSKKTSFLGLRLWVLIGIGVFAFIVLILCLLSIWITFRRKTRRSVDKYSLSQIPHVSKDIKVDKVEVQPSNDHVDSVSIHVHDNMTSDKNSDKLFVHLSKSSDPDNISQCSSIYHHERGLSLMSAEDGNFGTVKKQYMVTASPLVGLPEGSHLGWGHWFTLRDLELSTNRFSAENVIGEGGYGVVYKGRLINGSEVAVKRLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKALAYFHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLESGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVNLVEWLKMMVGSRRAEEVVDSSLEVKPPTRALKRALLVAFRCVDPDSEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASIDIVESLKDISGPSDTADKTKGSEECAPETTQG*