AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG013567

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013567 MtrunA17_Chr3g0097101 99.590 244 1 0 1 244 1 244 0.0 500
MsaG013567 MtrunA17_Chr8g0380021 62.449 245 90 2 1 244 1 244 1.23e-105 306
MsaG013567 MtrunA17_Chr2g0284911 59.023 266 81 4 1 244 1 260 1.59e-103 301
MsaG013567 MtrunA17_Chr3g0077501 59.565 230 83 3 16 243 1 222 2.78e-92 271
MsaG013567 MtrunA17_Chr8g0351051 50.877 171 84 0 16 186 1 171 8.18e-53 171
MsaG013567 MtrunA17_Chr8g0351031 44.340 212 110 3 16 221 1 210 1.84e-52 170
MsaG013567 MtrunA17_Chr5g0420091 47.701 174 90 1 16 188 1 174 1.07e-46 155
MsaG013567 MtrunA17_Chr7g0246431 41.262 206 121 0 16 221 1 206 1.65e-46 154
MsaG013567 MtrunA17_Chr7g0220111 42.793 222 116 5 16 229 1 219 9.58e-46 153
MsaG013567 MtrunA17_Chr8g0351041 53.793 145 62 2 16 157 1 143 1.75e-45 150
MsaG013567 MtrunA17_Chr2g0279821 49.359 156 77 2 16 170 1 155 5.09e-45 151
MsaG013567 MtrunA17_Chr8g0366231 47.312 186 91 2 16 197 1 183 5.89e-45 151
MsaG013567 MtrunA17_Chr4g0061691 41.206 199 116 1 16 213 1 199 7.17e-45 150
MsaG013567 MtrunA17_Chr6g0455511 41.071 224 118 5 16 229 1 220 1.27e-43 148
MsaG013567 MtrunA17_Chr3g0122251 43.519 216 110 6 16 223 1 212 3.02e-43 147
MsaG013567 MtrunA17_Chr5g0420081 40.952 210 108 4 16 212 1 207 4.12e-43 146
MsaG013567 MtrunA17_Chr4g0057151 41.361 191 110 1 16 204 1 191 5.32e-43 145
MsaG013567 MtrunA17_Chr5g0411691 45.087 173 89 2 16 186 1 169 1.05e-42 145
MsaG013567 MtrunA17_Chr4g0061671 45.349 172 91 2 16 186 1 170 1.96e-42 143
MsaG013567 MtrunA17_Chr4g0049541 46.980 149 77 2 16 164 1 147 4.11e-41 140
MsaG013567 MtrunA17_Chr4g0018421 39.698 199 110 5 16 211 1 192 1.29e-39 136
MsaG013567 MtrunA17_Chr7g0220121 43.575 179 95 4 16 192 1 175 1.57e-38 135
MsaG013567 MtrunA17_Chr1g0204111 35.593 236 129 4 16 250 17 230 4.47e-37 131
MsaG013567 MtrunA17_Chr6g0474371 41.618 173 99 2 16 186 1 173 2.45e-36 127
MsaG013567 MtrunA17_Chr4g0020221 42.632 190 103 3 16 201 1 188 5.14e-36 128
MsaG013567 MtrunA17_Chr5g0412461 42.857 175 94 2 16 187 1 172 1.28e-35 126
MsaG013567 MtrunA17_Chr5g0412271 41.899 179 90 2 16 187 1 172 1.03e-34 124
MsaG013567 MtrunA17_Chr5g0427401 40.116 172 101 1 16 187 1 170 2.09e-34 123
MsaG013567 MtrunA17_Chr3g0125241 44.218 147 75 2 16 160 26 167 5.99e-34 121
MsaG013567 MtrunA17_Chr4g0049901 38.043 184 110 2 16 196 27 209 3.74e-33 120
MsaG013567 MtrunA17_Chr1g0164791 38.824 170 97 3 16 179 1 169 3.62e-32 117
MsaG013567 MtrunA17_Chr1g0159661 42.177 147 78 2 16 160 1 142 1.71e-31 114
MsaG013567 MtrunA17_Chr3g0142191 38.857 175 91 4 16 183 1 166 2.20e-31 115
MsaG013567 MtrunA17_Chr5g0404951 38.265 196 103 5 16 203 1 186 1.00e-29 111
MsaG013567 MtrunA17_Chr7g0246381 73.770 61 16 0 16 76 1 61 1.33e-28 103
MsaG013567 MtrunA17_Chr8g0377561 79.310 58 12 0 16 73 1 58 6.19e-28 102
MsaG013567 MtrunA17_Chr2g0308251 63.768 69 25 0 16 84 1 69 6.74e-27 99.8
MsaG013567 MtrunA17_Chr1g0173161 73.333 60 16 0 16 75 1 60 9.96e-26 96.7
MsaG013567 MtrunA17_Chr5g0427921 65.000 60 21 0 16 75 1 60 1.93e-24 92.8
MsaG013567 MtrunA17_Chr5g0425191 70.690 58 17 0 16 73 1 58 5.91e-23 90.1
MsaG013567 MtrunA17_Chr3g0134451 62.857 70 25 1 16 84 1 70 7.04e-23 95.1
MsaG013567 MtrunA17_Chr4g0044071 67.241 58 19 0 16 73 1 58 3.42e-22 88.6
MsaG013567 MtrunA17_Chr2g0292791 44.340 106 49 1 11 106 3 108 3.16e-20 86.7
MsaG013567 MtrunA17_Chr3g0099411 37.662 154 72 4 11 146 3 150 2.50e-19 83.6
MsaG013567 MtrunA17_Chr2g0325971 45.783 83 45 0 11 93 3 85 4.07e-19 83.2
MsaG013567 MtrunA17_Chr3g0099421 52.703 74 35 0 11 84 28 101 4.41e-19 84.0
MsaG013567 MtrunA17_Chr2g0333981 36.667 120 64 3 13 122 8 125 5.17e-19 81.6
MsaG013567 MtrunA17_Chr1g0208561 45.238 84 46 0 11 94 3 86 6.32e-19 82.8
MsaG013567 MtrunA17_Chr1g0206721 42.453 106 51 1 11 106 3 108 6.63e-19 82.8
MsaG013567 MtrunA17_Chr3g0089141 45.238 84 46 0 11 94 3 86 7.60e-19 82.4
MsaG013567 MtrunA17_Chr1g0208581 50.000 74 37 0 11 84 3 76 2.18e-18 81.3
MsaG013567 MtrunA17_Chr5g0419601 39.450 109 60 2 11 119 3 105 2.63e-18 81.3
MsaG013567 MtrunA17_Chr1g0206991 41.509 106 52 1 11 106 3 108 2.94e-18 80.1
MsaG013567 MtrunA17_Chr8g0376821 53.623 69 32 0 16 84 1 69 3.06e-18 79.7
MsaG013567 MtrunA17_Chr1g0206701 46.429 84 45 0 11 94 3 86 3.36e-18 80.9
MsaG013567 MtrunA17_Chr1g0169761 42.268 97 56 0 16 112 1 97 3.42e-18 79.7
MsaG013567 MtrunA17_Chr8g0355091 41.509 106 52 1 11 106 3 108 3.88e-18 80.9
MsaG013567 MtrunA17_Chr8g0379021 37.097 124 62 4 13 124 8 127 8.12e-18 78.6
MsaG013567 MtrunA17_Chr1g0188671 37.391 115 71 1 11 124 41 155 8.90e-18 80.5
MsaG013567 MtrunA17_Chr1g0187361 48.649 74 38 0 11 84 3 76 9.21e-18 79.7
MsaG013567 MtrunA17_Chr1g0166611 43.617 94 44 1 28 121 17 101 9.47e-18 77.4
MsaG013567 MtrunA17_Chr1g0175601 41.509 106 59 1 16 118 1 106 2.81e-17 77.4
MsaG013567 MtrunA17_Chr1g0149391 47.297 74 39 0 11 84 3 76 6.14e-17 77.4
MsaG013567 MtrunA17_Chr4g0074101 49.275 69 35 0 16 84 1 69 7.80e-17 76.3
MsaG013567 MtrunA17_Chr1g0175611 50.704 71 35 0 16 86 1 71 8.28e-17 75.9
MsaG013567 MtrunA17_Chr2g0317481 45.946 74 40 0 11 84 3 76 1.13e-16 77.0
MsaG013567 MtrunA17_Chr2g0317451 45.946 74 40 0 11 84 3 76 1.15e-16 77.0
MsaG013567 MtrunA17_Chr8g0357771 49.275 69 35 0 16 84 1 69 2.71e-16 74.7
MsaG013567 MtrunA17_Chr4g0018951 36.090 133 80 2 13 140 8 140 3.87e-16 73.9
MsaG013567 MtrunA17_Chr5g0422421 45.946 74 40 0 11 84 3 76 4.40e-16 75.1
MsaG013567 MtrunA17_Chr5g0422941 45.946 74 40 0 11 84 3 76 4.91e-16 75.1
MsaG013567 MtrunA17_Chr1g0180591 49.275 69 35 0 16 84 1 69 5.12e-16 73.9
MsaG013567 MtrunA17_Chr4g0052081 33.333 138 86 2 16 147 1 138 9.18e-16 73.2
MsaG013567 MtrunA17_Chr5g0417661 54.386 57 26 0 12 68 52 108 1.33e-15 71.2
MsaG013567 MtrunA17_Chr3g0119901 46.377 69 37 0 16 84 8 76 2.24e-15 72.8
MsaG013567 MtrunA17_Chr4g0052061 28.481 158 106 1 16 166 1 158 3.47e-15 71.2
MsaG013567 MtrunA17_Chr3g0085241 43.243 74 42 0 11 84 35 108 3.84e-15 72.8
MsaG013567 MtrunA17_Chr8g0356071 46.377 69 37 0 16 84 1 69 5.70e-15 70.5
MsaG013567 MtrunA17_Chr2g0300441 43.750 80 43 1 17 94 7 86 7.27e-15 72.0
MsaG013567 MtrunA17_Chr3g0089151 45.946 74 40 0 11 84 3 76 8.38e-15 69.3
MsaG013567 MtrunA17_Chr2g0300421 45.946 74 40 0 11 84 3 76 1.07e-14 70.1
MsaG013567 MtrunA17_Chr4g0060841 54.717 53 24 0 16 68 1 53 2.06e-14 72.0
MsaG013567 MtrunA17_Chr2g0308271 32.540 126 83 1 75 198 32 157 6.36e-13 65.9
MsaG013567 MtrunA17_Chr1g0206691 43.478 69 39 0 26 94 1 69 1.32e-12 65.5
MsaG013567 MtrunA17_Chr5g0427961 40.000 90 52 2 75 164 4 91 1.11e-11 61.6
MsaG013567 MtrunA17_Chr4g0071601 35.833 120 65 3 13 122 8 125 1.37e-11 62.0
MsaG013567 MtrunA17_Chr1g0187351 45.763 59 32 0 26 84 1 59 2.15e-11 58.5
MsaG013567 MtrunA17_Chr3g0111841 44.068 59 33 0 23 81 2 60 4.07e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013567 AT3G58780.1 70.850 247 63 4 6 244 3 248 1.70e-119 341
MsaG013567 AT3G58780.5 70.850 247 63 4 6 244 9 254 2.85e-119 341
MsaG013567 AT2G42830.1 69.919 246 66 3 6 244 2 246 2.05e-118 338
MsaG013567 AT2G42830.2 69.355 248 66 4 6 244 2 248 1.94e-116 333
MsaG013567 AT3G58780.3 64.338 272 63 5 6 244 3 273 2.05e-113 327
MsaG013567 AT3G58780.2 68.421 247 62 5 6 244 3 241 2.84e-112 323
MsaG013567 AT3G58780.4 62.500 280 63 5 6 244 3 281 2.99e-112 324
MsaG013567 AT4G18960.1 63.008 246 82 4 7 244 8 252 4.75e-105 305
MsaG013567 AT4G09960.1 63.551 214 72 2 16 228 1 209 5.88e-94 276
MsaG013567 AT4G09960.6 63.551 214 72 2 16 228 2 210 6.28e-94 276
MsaG013567 AT4G09960.5 63.551 214 72 2 16 228 11 219 1.02e-93 276
MsaG013567 AT4G09960.3 63.256 215 73 2 15 228 26 235 2.25e-93 275
MsaG013567 AT4G09960.4 62.100 219 73 3 15 228 95 308 1.08e-90 271
MsaG013567 AT4G09960.2 60.280 214 65 3 16 228 1 195 1.42e-84 251
MsaG013567 AT4G18960.3 53.757 173 71 4 80 244 67 238 4.22e-53 172
MsaG013567 AT4G18960.2 53.757 173 71 4 80 244 67 238 4.22e-53 172
MsaG013567 AT2G45650.1 44.286 210 107 3 16 223 1 202 2.63e-51 168
MsaG013567 AT5G60910.1 44.809 183 100 1 16 197 1 183 2.54e-49 162
MsaG013567 AT2G45660.1 44.000 175 98 0 16 190 1 175 3.31e-47 156
MsaG013567 AT3G57230.1 47.742 155 80 1 16 170 1 154 5.62e-47 156
MsaG013567 AT3G57230.4 47.742 155 80 1 16 170 1 154 5.62e-47 156
MsaG013567 AT4G22950.2 47.368 171 89 1 16 186 1 170 1.15e-46 154
MsaG013567 AT3G57230.2 51.408 142 68 1 16 157 1 141 6.05e-46 150
MsaG013567 AT4G22950.3 47.647 170 88 1 16 185 1 169 9.84e-46 152
MsaG013567 AT4G22950.1 47.647 170 88 1 16 185 1 169 9.84e-46 152
MsaG013567 AT3G61120.1 41.981 212 121 1 16 227 1 210 3.10e-45 152
MsaG013567 AT1G26310.1 39.918 243 120 7 16 241 1 234 3.56e-45 152
MsaG013567 AT1G24260.1 45.408 196 101 3 16 208 1 193 5.04e-45 152
MsaG013567 AT1G69120.2 45.506 178 94 3 16 191 1 177 8.91e-45 150
MsaG013567 AT2G45660.2 46.358 151 81 0 16 166 1 151 1.54e-44 147
MsaG013567 AT1G24260.2 45.178 197 101 4 16 208 1 194 1.57e-44 150
MsaG013567 AT1G69120.1 45.506 178 94 3 16 191 1 177 4.62e-44 149
MsaG013567 AT5G62165.3 44.706 170 94 0 16 185 1 170 3.58e-43 146
MsaG013567 AT5G62165.1 44.706 170 94 0 16 185 1 170 3.58e-43 146
MsaG013567 AT5G62165.2 44.706 170 94 0 16 185 1 170 3.58e-43 146
MsaG013567 AT5G62165.10 47.170 159 83 1 16 173 1 159 5.98e-43 145
MsaG013567 AT5G62165.4 47.170 159 83 1 16 173 1 159 5.98e-43 145
MsaG013567 AT5G62165.17 49.296 142 72 0 16 157 1 142 6.71e-43 143
MsaG013567 AT5G62165.12 49.296 142 72 0 16 157 1 142 6.71e-43 143
MsaG013567 AT5G62165.11 49.296 142 72 0 16 157 1 142 6.71e-43 143
MsaG013567 AT5G62165.6 48.630 146 75 0 16 161 1 146 1.01e-42 143
MsaG013567 AT5G62165.9 48.630 146 75 0 16 161 1 146 1.01e-42 143
MsaG013567 AT5G62165.7 48.630 146 75 0 16 161 1 146 1.01e-42 143
MsaG013567 AT5G62165.8 48.630 146 75 0 16 161 1 146 1.01e-42 143
MsaG013567 AT5G62165.13 48.630 146 75 0 16 161 1 146 1.01e-42 143
MsaG013567 AT2G03710.3 44.253 174 94 2 16 187 1 173 1.59e-42 143
MsaG013567 AT2G03710.2 42.857 182 101 2 16 195 1 181 6.04e-42 144
MsaG013567 AT2G03710.1 42.857 182 101 2 16 195 1 181 6.41e-42 144
MsaG013567 AT5G15800.1 45.977 174 93 1 16 188 1 174 1.20e-41 143
MsaG013567 AT1G24260.3 48.750 160 78 3 16 171 1 160 2.01e-41 142
MsaG013567 AT5G15800.2 45.977 174 93 1 16 188 1 174 3.08e-41 142
MsaG013567 AT3G02310.1 45.977 174 93 1 16 188 1 174 3.11e-41 142
MsaG013567 AT4G18960.4 53.719 121 56 0 69 189 56 176 1.15e-40 138
MsaG013567 AT3G02310.2 46.784 171 90 1 16 185 1 171 1.40e-40 139
MsaG013567 AT4G37940.1 43.396 159 88 2 16 173 1 158 5.21e-40 138
MsaG013567 AT4G11880.2 45.860 157 83 2 16 171 1 156 9.51e-40 136
MsaG013567 AT4G11880.3 45.860 157 83 2 16 171 1 156 9.51e-40 136
MsaG013567 AT4G11880.4 48.299 147 74 2 16 161 1 146 1.76e-39 137
MsaG013567 AT4G11880.1 48.299 147 74 2 16 161 1 146 1.76e-39 137
MsaG013567 AT5G51860.2 43.678 174 97 1 16 188 1 174 1.03e-38 134
MsaG013567 AT4G37940.3 44.444 144 79 1 16 159 1 143 1.25e-38 133
MsaG013567 AT4G37940.4 45.070 142 77 1 16 157 1 141 2.03e-38 134
MsaG013567 AT2G22630.1 43.114 167 89 4 16 180 1 163 1.67e-37 132
MsaG013567 AT2G22630.2 43.114 167 89 4 16 180 1 163 1.67e-37 132
MsaG013567 AT5G51860.1 44.785 163 89 1 16 177 1 163 2.07e-37 131
MsaG013567 AT5G51870.4 42.347 196 105 5 16 208 1 191 3.07e-37 131
MsaG013567 AT5G51870.1 45.455 176 93 3 16 189 1 175 4.01e-37 130
MsaG013567 AT5G51870.3 42.347 196 105 5 16 208 11 201 4.14e-37 130
MsaG013567 AT5G51870.2 48.980 147 74 1 16 161 1 147 1.61e-36 127
MsaG013567 AT4G24540.1 41.436 181 100 2 16 193 1 178 2.29e-36 129
MsaG013567 AT5G51870.5 48.000 150 77 1 13 161 21 170 3.28e-36 127
MsaG013567 AT5G13790.1 43.429 175 88 2 16 188 1 166 8.52e-36 128
MsaG013567 AT3G30260.1 44.231 156 76 3 16 165 1 151 9.84e-36 128
MsaG013567 AT5G13790.2 43.182 176 90 2 16 188 1 169 2.26e-35 127
MsaG013567 AT2G22540.3 40.351 171 96 2 16 183 1 168 2.67e-35 126
MsaG013567 AT2G22540.1 40.351 171 96 2 16 183 1 168 2.67e-35 126
MsaG013567 AT2G14210.1 41.808 177 92 4 16 183 1 175 2.35e-34 124
MsaG013567 AT2G14210.2 41.808 177 92 4 16 183 1 175 3.21e-34 123
MsaG013567 AT5G20240.1 42.000 150 80 2 16 163 1 145 4.01e-32 117
MsaG013567 AT1G71692.1 39.560 182 102 2 16 189 1 182 4.71e-32 117
MsaG013567 AT5G62165.14 58.511 94 35 1 16 109 1 90 6.07e-32 114
MsaG013567 AT2G22540.2 39.181 171 93 3 16 183 1 163 3.09e-31 115
MsaG013567 AT5G23260.4 39.086 197 107 4 9 197 6 197 3.13e-31 116
MsaG013567 AT5G20240.2 42.657 143 75 2 16 156 1 138 5.76e-31 112
MsaG013567 AT5G23260.2 39.785 186 103 3 16 197 1 181 1.05e-30 115
MsaG013567 AT3G54340.1 40.994 161 82 4 16 171 1 153 2.18e-30 113
MsaG013567 AT3G57390.3 35.196 179 107 2 16 186 1 178 1.43e-29 111
MsaG013567 AT3G57390.1 35.196 179 107 2 16 186 1 178 2.69e-29 111
MsaG013567 AT5G23260.1 38.579 197 103 5 9 197 6 192 6.01e-29 110
MsaG013567 AT5G23260.3 39.247 186 90 4 16 197 1 167 1.53e-27 106
MsaG013567 AT5G65070.1 36.310 168 98 2 16 182 1 160 1.56e-25 100
MsaG013567 AT5G10140.4 37.580 157 89 2 16 171 1 149 1.95e-25 99.4
MsaG013567 AT5G65050.2 35.632 174 101 3 16 187 1 165 2.01e-25 99.4
MsaG013567 AT5G10140.1 38.816 152 84 2 16 166 1 144 4.38e-25 99.0
MsaG013567 AT5G65050.3 35.632 174 101 3 16 187 1 165 4.67e-25 98.6
MsaG013567 AT5G10140.2 38.816 152 84 2 16 166 1 144 5.22e-25 97.8
MsaG013567 AT5G65050.5 35.260 173 92 3 16 187 1 154 7.96e-25 97.8
MsaG013567 AT5G10140.3 38.816 152 84 2 16 166 1 144 9.16e-25 97.8
MsaG013567 AT5G65070.2 36.126 191 98 5 16 182 1 191 3.03e-24 97.4
MsaG013567 AT5G65080.3 39.623 159 83 5 16 171 8 156 6.38e-24 95.5
MsaG013567 AT5G65060.1 33.908 174 104 3 16 187 1 165 7.98e-24 95.5
MsaG013567 AT5G65060.3 33.908 174 104 3 16 187 1 165 9.71e-24 95.1
MsaG013567 AT5G65050.1 36.943 157 88 3 16 170 1 148 1.41e-23 94.4
MsaG013567 AT1G31140.1 39.073 151 83 3 16 161 1 147 2.74e-23 94.4
MsaG013567 AT5G65070.4 37.162 148 84 2 16 162 1 140 6.42e-23 91.7
MsaG013567 AT5G65060.2 33.526 173 95 3 16 187 1 154 7.32e-23 92.8
MsaG013567 AT5G65070.5 36.111 180 91 5 16 171 1 180 7.77e-23 93.2
MsaG013567 AT1G31140.2 38.710 155 80 4 16 161 1 149 8.75e-23 93.2
MsaG013567 AT1G22130.1 75.926 54 13 0 16 69 1 54 3.19e-22 94.0
MsaG013567 AT1G77980.1 61.429 70 26 1 16 84 1 70 3.20e-22 94.0
MsaG013567 AT5G65080.2 38.065 155 86 3 16 169 8 153 1.00e-21 90.1
MsaG013567 AT5G65070.3 62.712 59 22 0 16 74 1 59 4.32e-21 89.0
MsaG013567 AT1G77080.5 37.356 174 100 3 16 188 1 166 2.29e-20 85.9
MsaG013567 AT1G77080.11 36.994 173 100 3 16 187 1 165 9.70e-20 84.0
MsaG013567 AT1G77080.4 36.571 175 102 3 16 189 1 167 1.30e-19 84.3
MsaG013567 AT1G77950.3 52.857 70 32 1 16 84 1 70 2.77e-18 82.0
MsaG013567 AT1G77950.2 52.857 70 32 1 16 84 1 70 2.77e-18 82.0
MsaG013567 AT1G77950.1 52.857 70 32 1 16 84 1 70 2.77e-18 82.0
MsaG013567 AT1G77950.4 52.857 70 32 1 16 84 1 70 2.77e-18 82.0
MsaG013567 AT1G77080.2 35.028 177 98 3 16 189 1 163 3.05e-18 80.5
MsaG013567 AT1G77080.8 31.604 212 114 5 16 201 1 207 8.56e-18 80.1
MsaG013567 AT4G36590.1 41.880 117 60 3 17 133 7 115 2.47e-17 79.3
MsaG013567 AT1G65360.1 33.333 105 69 1 13 117 3 106 4.12e-17 78.2
MsaG013567 AT1G77080.12 36.478 159 84 3 16 171 1 145 9.11e-17 75.5
MsaG013567 AT1G18750.4 62.264 53 20 0 16 68 1 53 1.82e-16 78.6
MsaG013567 AT1G18750.1 62.264 53 20 0 16 68 1 53 2.33e-16 78.2
MsaG013567 AT1G18750.3 62.264 53 20 0 16 68 1 53 2.88e-16 78.2
MsaG013567 AT2G34440.1 35.088 114 68 1 16 129 1 108 3.17e-16 74.7
MsaG013567 AT5G60440.1 37.069 116 59 2 13 126 3 106 3.20e-16 77.0
MsaG013567 AT4G37435.1 57.895 57 24 0 16 72 1 57 3.24e-16 75.1
MsaG013567 AT1G01530.1 46.479 71 38 0 12 82 2 72 3.35e-16 76.3
MsaG013567 AT3G66656.1 47.143 70 37 0 16 85 1 70 1.00e-15 73.6
MsaG013567 AT2G03060.3 30.476 210 109 8 16 206 1 192 1.14e-15 76.3
MsaG013567 AT2G03060.7 30.476 210 109 8 16 206 1 192 1.14e-15 76.3
MsaG013567 AT2G03060.1 30.476 210 109 8 16 206 1 192 1.14e-15 76.3
MsaG013567 AT2G03060.2 30.476 210 109 8 16 206 1 192 1.16e-15 76.3
MsaG013567 AT1G72350.1 54.412 68 29 1 17 84 43 108 1.93e-15 73.6
MsaG013567 AT5G60910.2 33.333 117 78 0 81 197 5 121 6.41e-15 71.2
MsaG013567 AT2G24840.1 44.928 69 38 0 16 84 62 130 1.31e-14 72.0
MsaG013567 AT1G47760.1 44.737 76 42 0 16 91 1 76 2.57e-14 69.7
MsaG013567 AT3G04100.1 38.961 77 47 0 9 85 6 82 3.56e-14 69.7
MsaG013567 AT1G69540.1 30.539 167 87 5 16 182 1 138 1.15e-13 70.1
MsaG013567 AT1G69540.2 31.138 167 86 5 16 182 1 138 1.68e-13 69.7
MsaG013567 AT1G28460.1 43.243 74 42 0 11 84 2 75 3.01e-13 66.6
MsaG013567 AT1G29962.1 43.836 73 41 0 12 84 3 75 3.41e-13 66.6
MsaG013567 AT3G57230.5 33.962 106 65 2 69 170 16 120 2.97e-12 64.3
MsaG013567 AT3G57230.3 33.962 106 65 2 69 170 16 120 2.97e-12 64.3
MsaG013567 AT1G28450.1 39.189 74 45 0 11 84 2 75 1.32e-11 62.4

Find 55 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAATCTGCCTTCTCAATT+TGG 0.180584 3:+56497078 None:intergenic
AGGATCTTCTCAAAAGAAAA+TGG 0.218426 3:-56501961 MsaT013567.1:CDS
TTCTTTCCGGTAAATCTTCT+TGG 0.243928 3:-56495134 MsaT013567.1:CDS
GATTTACCGGAAAGAAATTT+CGG 0.349244 3:+56495141 None:intergenic
AGATACAGATTCTGCGTTAG+TGG 0.372608 3:+56497309 None:intergenic
ATATGACCGAAATTTCTTTC+CGG 0.382195 3:-56495147 MsaT013567.1:CDS
TCAATTTGGATGATTCTTGC+TGG 0.395773 3:+56497092 None:intergenic
TCTGATCCAAGAAGATTTAC+CGG 0.399583 3:+56495128 None:intergenic
CGGTCATATGCTTGTGATGA+AGG 0.400301 3:+56495161 None:intergenic
GATCCTTCTCCACCTTCATT+TGG 0.416333 3:+56501978 None:intergenic
GAGATATTCAGAATCTAAAT+AGG 0.416939 3:-56497057 MsaT013567.1:intron
AAAGAATCTCGAGGGTAGAT+TGG 0.440551 3:-56496902 MsaT013567.1:CDS
ACACAAGTTGGAGCGCAGTT+TGG 0.446128 3:+56495081 None:intergenic
TTAACAATCAGATCTCCTTC+TGG 0.448534 3:+56493678 None:intergenic
TGATCACACATTGTTTGATC+TGG 0.450279 3:+56495191 None:intergenic
ACAAAGAACAGATAATTCAT+AGG 0.465996 3:+56501848 None:intergenic
AATTAATAGGCGGTTGAAGA+AGG 0.472862 3:-56493711 MsaT013567.1:intron
TGTATGAATATGCCAACAAC+AGG 0.477767 3:-56501782 MsaT013567.1:intron
AAGCAGAGTTAGATCTAGAA+AGG 0.478447 3:-56496869 MsaT013567.1:intron
GGATCTTCTCAAAAGAAAAT+GGG 0.486264 3:-56501960 MsaT013567.1:CDS
GGATTGAAAACACTACCAAT+AGG 0.493244 3:-56501914 MsaT013567.1:CDS
TGTAAACTCAAACCTGTTGT+TGG 0.501282 3:+56501770 None:intergenic
TGAGACGTTGTTTGCTGATG+TGG 0.507873 3:-56496123 MsaT013567.1:CDS
AAAATCATAACAATTATCTA+CGG 0.520845 3:-56495406 MsaT013567.1:CDS
ATATGCTTGTGATGAAGGTA+AGG 0.525429 3:+56495166 None:intergenic
GAAGGCTGGAGGGTGCCAGA+AGG 0.527627 3:-56493693 MsaT013567.1:CDS
CTCGAGGGTAGATTGGAGAA+AGG 0.529688 3:-56496895 MsaT013567.1:CDS
ATATGAATGCTTACACAAGT+TGG 0.536621 3:+56495069 None:intergenic
AATAGGCGGTTGAAGAAGGC+TGG 0.537011 3:-56493707 MsaT013567.1:intron
CTACCAAATGAAGGTGGAGA+AGG 0.538882 3:-56501981 MsaT013567.1:CDS
TAACAATTATCTACGGGCTA+AGG 0.540595 3:-56495399 MsaT013567.1:intron
AAATCATAACAATTATCTAC+GGG 0.540776 3:-56495405 MsaT013567.1:CDS
TCTCAAAAGAAAATGGGAAG+AGG 0.543069 3:-56501954 MsaT013567.1:CDS
GAGGGAAAATTGAAATCAAG+AGG 0.543111 3:-56501935 MsaT013567.1:CDS
CACATCCTTGGTGAAGCTCT+AGG 0.550741 3:-56496946 MsaT013567.1:CDS
CTCAAAAGAAAATGGGAAGA+GGG 0.561170 3:-56501953 MsaT013567.1:CDS
AATATGGAGCTACCAAATGA+AGG 0.573967 3:-56501990 MsaT013567.1:CDS
CTTGTTGTCTTCTCAACCCG+CGG 0.581410 3:-56501810 MsaT013567.1:CDS
TGTATCTGAAGCTAATACCC+AGG 0.584785 3:-56497293 MsaT013567.1:intron
TGCAGATAGCTGAACATGAG+AGG 0.591145 3:-56495241 MsaT013567.1:intron
CGCGGGTTGAGAAGACAACA+AGG 0.596947 3:+56501811 None:intergenic
AAGAATCATCCAAATTGAGA+AGG 0.597770 3:-56497087 MsaT013567.1:CDS
TGTGGAGTTCATGCAAAAGC+GGG 0.598411 3:-56496105 MsaT013567.1:intron
CATATTCATACAAGCGACCG+CGG 0.601106 3:+56501793 None:intergenic
GGCGGTTGAAGAAGGCTGGA+GGG 0.618944 3:-56493703 MsaT013567.1:CDS
GTGTTAGAGCAACTATTGAA+AGG 0.619419 3:-56497354 MsaT013567.1:CDS
CAAAGAACTAAAGAATCTCG+AGG 0.620859 3:-56496911 MsaT013567.1:CDS
ATGTGGAGTTCATGCAAAAG+CGG 0.623084 3:-56496106 MsaT013567.1:CDS
ATATTCATACAAGCGACCGC+GGG 0.626111 3:+56501794 None:intergenic
GCAGATAGCTGAACATGAGA+GGG 0.626753 3:-56495240 MsaT013567.1:intron
ATGGAGCTACCAAATGAAGG+TGG 0.637434 3:-56501987 MsaT013567.1:CDS
AGGCGGTTGAAGAAGGCTGG+AGG 0.651786 3:-56493704 MsaT013567.1:CDS
AAAGAACTAAAGAATCTCGA+GGG 0.657285 3:-56496910 MsaT013567.1:CDS
GAGATCCTAGAGCTTCACCA+AGG 0.715769 3:+56496941 None:intergenic
GCGGGTTGAGAAGACAACAA+GGG 0.777562 3:+56501812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 56493685 56502009 56493685 ID=MsaG013567
Chr3 mRNA 56493685 56502009 56493685 ID=MsaT013567.1;Parent=MsaG013567
Chr3 exon 56493685 56493724 56493685 ID=MsaT013567.1.exon8;Parent=MsaT013567.1
Chr3 CDS 56493685 56493724 56493685 ID=cds.MsaT013567.1;Parent=MsaT013567.1
Chr3 exon 56495083 56495258 56495083 ID=MsaT013567.1.exon7;Parent=MsaT013567.1
Chr3 CDS 56495083 56495258 56495083 ID=cds.MsaT013567.1;Parent=MsaT013567.1
Chr3 exon 56495400 56495441 56495400 ID=MsaT013567.1.exon6;Parent=MsaT013567.1
Chr3 CDS 56495400 56495441 56495400 ID=cds.MsaT013567.1;Parent=MsaT013567.1
Chr3 exon 56496106 56496147 56496106 ID=MsaT013567.1.exon5;Parent=MsaT013567.1
Chr3 CDS 56496106 56496147 56496106 ID=cds.MsaT013567.1;Parent=MsaT013567.1
Chr3 exon 56496870 56496969 56496870 ID=MsaT013567.1.exon4;Parent=MsaT013567.1
Chr3 CDS 56496870 56496969 56496870 ID=cds.MsaT013567.1;Parent=MsaT013567.1
Chr3 exon 56497058 56497119 56497058 ID=MsaT013567.1.exon3;Parent=MsaT013567.1
Chr3 CDS 56497058 56497119 56497058 ID=cds.MsaT013567.1;Parent=MsaT013567.1
Chr3 exon 56497294 56497375 56497294 ID=MsaT013567.1.exon2;Parent=MsaT013567.1
Chr3 CDS 56497294 56497375 56497294 ID=cds.MsaT013567.1;Parent=MsaT013567.1
Chr3 exon 56501783 56502009 56501783 ID=MsaT013567.1.exon1;Parent=MsaT013567.1
Chr3 CDS 56501783 56502009 56501783 ID=cds.MsaT013567.1;Parent=MsaT013567.1
Gene Sequence

>MsaT013567.1

ATGGAGCTACCAAATGAAGGTGGAGAAGGATCTTCTCAAAAGAAAATGGGAAGAGGGAAAATTGAAATCAAGAGGATTGAAAACACTACCAATAGGCAAGTCACTTTTTGCAAACGACGCAATGGATTGTTGAAGAAAGCCTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGCGGTCGCTTGTATGAATATGCCAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCTTGTGCTGCTTCCACTAACGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGGCAGATTCGAGATATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTAGGATCTCTGAGTCTCAAAGAACTAAAGAATCTCGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAATCATAACAATTATCTACGGGCTAAGATAGCTGAACATGAGAGGGCTCAACAACAGCAACAAAATTTGATGCCAGATCAAACAATGTGTGATCAGTCCTTACCTTCATCACAAGCATATGACCGAAATTTCTTTCCGGTAAATCTTCTTGGATCAGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCGCTCCAACTTGTGCGGTTGAAGAAGGCTGGAGGGTGCCAGAAGGAGATCTGA
Protein sequence

>MsaT013567.1

MELPNEGGEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPDQTMCDQSLPSSQAYDRNFFPVNLLGSDQQQYSRQDQTALQLVRLKKAGGCQKEI*