AlfalfaGEDB | MsaG013755

M. sativa ssp. caerulea / MsaG013755

KEGG: K11294
GO: -
PFAM: PF13673.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013755	AES70281.2	85.079	315	43	1	1	315	1	311	9.13e-179	509

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013755	sp\|Q7XTT4\|NUCL2_ORYSJ	52.055	73	34	1	254	325	431	503	1.34e-18	90.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013755	tr\|G7J1Z7\|G7J1Z7_MEDTR	85.079	315	43	1	1	315	1	311	4.36e-179	509

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013755	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001907	MsaG013755	0.847882	1.650259e-59	8.324764e-57
MsaG004369	MsaG013755	0.812524	6.980330e-51	1.268196e-48
MsaG011425	MsaG013755	0.810963	1.520301e-50	2.657936e-48
MsaG046696	MsaG013755	0.808298	5.646792e-50	9.255547e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013755	MtrunA17_Chr3g0098461	84.906	159	24	0	1	159	1	159	6.90e-97	283
MsaG013755	MtrunA17_Chr3g0098471	84.884	172	22	1	158	329	20	187	1.10e-84	253
MsaG013755	MtrunA17_Chr0c05g0492161	67.290	107	35	0	1	107	1	107	1.29e-45	151
MsaG013755	MtrunA17_Chr4g0038111	71.233	73	21	0	253	325	321	393	4.35e-28	114
MsaG013755	MtrunA17_Chr1g0163591	51.948	77	36	1	250	325	271	347	4.48e-19	88.2
MsaG013755	MtrunA17_Chr1g0163591	35.859	198	95	7	159	325	20	216	5.39e-19	87.8
MsaG013755	MtrunA17_Chr3g0090311	33.544	158	93	6	6	153	2	157	2.63e-13	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013755	AT3G18610.3	47.436	78	40	1	248	325	332	408	1.49e-17	84.0
MsaG013755	AT3G18610.1	47.436	78	40	1	248	325	362	438	1.52e-17	84.0
MsaG013755	AT3G18610.2	47.436	78	40	1	248	325	302	378	1.65e-17	83.6
MsaG013755	AT1G48920.1	42.697	89	49	2	238	325	265	352	3.43e-16	79.7
MsaG013755	AT5G13780.1	38.136	118	67	5	37	151	41	155	6.40e-11	61.2

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGAGTATCCACGTC+AGG	0.555864	3:-60390187	None:intergenic
AAAGAAGCAAAAGGTAGATG+AGG	0.604240	3:+60396372	MsaT013755.1:CDS
AAAGATAGGGCTAACGAAGA+GGG	0.608748	3:-60390323	None:intergenic
AAAGATGGGGTATGAGAAGG+AGG	0.631960	3:+60395035	MsaT013755.1:CDS
AACGATGGTGTCCCCGGGTG+TGG	0.437378	3:+60390108	None:intergenic
AATCCATCAGAGTTGGTCTT+CGG	0.430864	3:-60395000	None:intergenic
ACTTGTGACCATGGCTGAAA+TGG	0.368546	3:+60390369	MsaT013755.1:CDS
AGAACTATCAGCCTTCTTTG+CGG	0.521392	3:-60396844	None:intergenic
AGAATCTTATATAGGTCAAC+AGG	0.439517	3:-60390148	None:intergenic
AGCCCTATCTTTCGGAGAAA+AGG	0.431404	3:+60390334	MsaT013755.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	60390112	60397452	60390112	ID=MsaG013755
Chr3	mRNA	60390112	60397452	60390112	ID=MsaT013755.1;Parent=MsaG013755
Chr3	exon	60390112	60390402	60390112	ID=MsaT013755.1.exon1;Parent=MsaT013755.1
Chr3	CDS	60390112	60390402	60390112	ID=cds.MsaT013755.1;Parent=MsaT013755.1
Chr3	exon	60394970	60395153	60394970	ID=MsaT013755.1.exon2;Parent=MsaT013755.1
Chr3	CDS	60394970	60395153	60394970	ID=cds.MsaT013755.1;Parent=MsaT013755.1
Chr3	exon	60396332	60396411	60396332	ID=MsaT013755.1.exon3;Parent=MsaT013755.1
Chr3	CDS	60396332	60396411	60396332	ID=cds.MsaT013755.1;Parent=MsaT013755.1
Chr3	exon	60396569	60396682	60396569	ID=MsaT013755.1.exon4;Parent=MsaT013755.1
Chr3	CDS	60396569	60396682	60396569	ID=cds.MsaT013755.1;Parent=MsaT013755.1
Chr3	exon	60396801	60396902	60396801	ID=MsaT013755.1.exon5;Parent=MsaT013755.1
Chr3	CDS	60396801	60396902	60396801	ID=cds.MsaT013755.1;Parent=MsaT013755.1
Chr3	exon	60397158	60397246	60397158	ID=MsaT013755.1.exon6;Parent=MsaT013755.1
Chr3	CDS	60397158	60397246	60397158	ID=cds.MsaT013755.1;Parent=MsaT013755.1
Chr3	exon	60397323	60397452	60397323	ID=MsaT013755.1.exon7;Parent=MsaT013755.1
Chr3	CDS	60397323	60397452	60397323	ID=cds.MsaT013755.1;Parent=MsaT013755.1

Gene Sequence

>MsaT013755.1

ATGGTGTCCCCGGGTGTGGTCGTAAGAGACGCAACACCTGTTGACCTATATAAGATTCTGGTGAATGATGTCTTTCCTGACGTGGATACTCAAAGTTTGGTGAATGGTAAGCTTCTTCAAGTTGCAGCGGATGATCTCCTAGGCATTATCTTCGGTTACATCGTCTTTGATGTTGGTGAACTGAAGCGTACTAGTTACGGTCATATCACTTCCCTCTTCGTTAGCCCTATCTTTCGGAGAAAAGGACACGCTACTCGACTTGTGACCATGGCTGAAATGGACTTGGAAAAGCAAGGTGCTGCTTACGTCTCAGTGCCCGTCCCGAAGACCAACTCTGATGGATTACTCTTCTTCGAAAAGATGGGGTATGAGAAGGAGGCAGTGAAGAGCAATTATATTGATGGGAAGGATGATGCTAATGTCATCATGACGAAGAAGTTCGAGGGGAAGCAGATGCATTATGCGGAGACCGAAGGCAAGAGGCAAGCTGTGGAAGAAGTCGAGGAAGTTTCTTCAAAGAAGCAAAAGGTAGATGAGGTTGCTGCCAAACAAAAGAACCCTGCAACAAAAGTTGTTCCATCCAAAAATGGGAGTGCACCTGTAAAGAAAGACGATCTTTATTATTCATCTTCTGAAGAATCTTCTGGTGAATCTTCTGATGAAGATGAGAAACCTGCAGCAGAAGTTGTTCCTTCCAAAATAGGAAGTGCACCCGCAAAGAAGGCTGATAGTTCTGACCAAGAATCTGACGAATCTTCTGGTGAAGATGAGCCTAATACTCCTGCTACACAAAATGTGAACAGTCGTGTGAAGACATTATATGTTGGGAACTTATCCTTCGGTGTGCAAAAATCTGACATAGAAAAATTCTTCCAAGATTGTGGAAAAGTAATTGATGTACGTCTTGCTTCTCATAAGGATGGAAAGCTTAAAGGCTTTGGACATGTTGAGTTTGCAACTGCAGAGGCAGCCCAATACGTAAGCTCTTGA

Protein sequence

>MsaT013755.1

MVSPGVVVRDATPVDLYKILVNDVFPDVDTQSLVNGKLLQVAADDLLGIIFGYIVFDVGELKRTSYGHITSLFVSPIFRRKGHATRLVTMAEMDLEKQGAAYVSVPVPKTNSDGLLFFEKMGYEKEAVKSNYIDGKDDANVIMTKKFEGKQMHYAETEGKRQAVEEVEEVSSKKQKVDEVAAKQKNPATKVVPSKNGSAPVKKDDLYYSSSEESSGESSDEDEKPAAEVVPSKIGSAPAKKADSSDQESDESSGEDEPNTPATQNVNSRVKTLYVGNLSFGVQKSDIEKFFQDCGKVIDVRLASHKDGKLKGFGHVEFATAEAAQYVSS*