AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG013797

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013797 MtrunA17_Chr3g0099951 86.816 402 25 2 1 380 1 396 0.0 706
MsaG013797 MtrunA17_Chr6g0483151 69.652 402 96 3 1 380 1 398 0.0 553
MsaG013797 MtrunA17_Chr2g0293491 37.793 299 137 6 12 274 2 287 1.34e-58 192
MsaG013797 MtrunA17_Chr4g0051261 38.796 299 134 6 12 274 2 287 2.21e-58 192
MsaG013797 MtrunA17_Chr3g0093571 35.220 318 163 5 12 288 23 338 1.26e-55 191
MsaG013797 MtrunA17_Chr3g0093391 35.220 318 163 5 12 288 21 336 1.44e-55 191
MsaG013797 MtrunA17_Chr4g0057791 33.333 315 166 7 4 280 209 517 1.87e-52 182
MsaG013797 MtrunA17_Chr4g0002001 36.364 308 149 9 12 276 2 305 4.69e-51 173
MsaG013797 MtrunA17_Chr8g0377071 33.754 317 168 7 7 287 379 689 2.06e-50 180
MsaG013797 MtrunA17_Chr2g0286421 35.016 317 168 9 9 294 97 406 4.57e-50 176
MsaG013797 MtrunA17_Chr6g0453711 33.968 315 170 7 11 294 107 414 6.01e-50 177
MsaG013797 MtrunA17_Chr8g0358921 35.959 292 155 5 18 279 51 340 7.17e-50 171
MsaG013797 MtrunA17_Chr4g0040141 34.177 316 168 8 11 294 126 433 9.24e-50 178
MsaG013797 MtrunA17_Chr3g0130781 36.624 314 143 10 20 280 24 334 1.44e-49 174
MsaG013797 MtrunA17_Chr4g0045841 34.602 289 150 7 20 276 61 342 4.21e-49 171
MsaG013797 MtrunA17_Chr3g0141871 33.775 302 166 8 13 283 31 329 4.29e-49 170
MsaG013797 MtrunA17_Chr8g0378831 33.871 310 164 8 13 287 31 334 5.30e-49 170
MsaG013797 MtrunA17_Chr5g0397261 34.983 303 157 7 20 289 47 342 7.24e-49 169
MsaG013797 MtrunA17_Chr5g0409421 32.154 311 181 6 12 296 2 308 1.59e-48 171
MsaG013797 MtrunA17_Chr4g0066691 34.286 315 169 9 11 294 101 408 2.11e-48 172
MsaG013797 MtrunA17_Chr4g0061141 34.494 316 167 8 11 294 102 409 2.36e-48 174
MsaG013797 MtrunA17_Chr1g0187371 34.812 293 153 6 16 274 20 308 3.61e-48 166
MsaG013797 MtrunA17_Chr3g0122781 32.229 332 174 7 4 287 407 735 7.25e-48 174
MsaG013797 MtrunA17_Chr8g0387401 33.663 303 161 7 20 289 58 353 1.04e-47 167
MsaG013797 MtrunA17_Chr5g0396361 33.228 316 175 9 9 294 135 444 2.71e-47 170
MsaG013797 MtrunA17_Chr7g0273601 32.861 353 189 11 11 322 104 449 5.67e-47 169
MsaG013797 MtrunA17_Chr7g0218071 32.381 315 176 8 11 294 117 425 9.38e-47 170
MsaG013797 MtrunA17_Chr8g0369451 31.046 306 181 6 12 291 2 303 1.77e-46 165
MsaG013797 MtrunA17_Chr2g0317501 32.911 316 176 8 9 294 129 438 7.98e-46 167
MsaG013797 MtrunA17_Chr2g0324461 33.123 317 170 9 11 294 138 445 1.10e-45 167
MsaG013797 MtrunA17_Chr8g0385971 32.595 316 173 8 11 294 87 394 2.28e-45 164
MsaG013797 MtrunA17_Chr3g0131861 32.166 314 177 8 11 294 94 401 4.56e-45 163
MsaG013797 MtrunA17_Chr1g0191221 33.754 317 174 8 11 297 119 429 1.14e-44 162
MsaG013797 MtrunA17_Chr7g0248461 31.142 289 159 7 20 275 44 325 1.48e-44 158
MsaG013797 MtrunA17_Chr4g0030151 34.256 289 150 7 20 275 45 326 1.58e-44 158
MsaG013797 MtrunA17_Chr1g0201571 32.698 315 184 6 9 298 121 432 1.56e-43 159
MsaG013797 MtrunA17_Chr8g0348481 31.142 289 159 7 20 275 43 324 2.08e-42 152
MsaG013797 MtrunA17_Chr4g0030231 31.683 303 167 7 20 289 46 341 3.40e-42 152
MsaG013797 MtrunA17_Chr4g0065851 33.993 303 157 9 11 276 22 318 9.01e-41 151
MsaG013797 MtrunA17_Chr8g0392811 34.228 298 159 9 11 274 114 408 1.44e-40 151
MsaG013797 MtrunA17_Chr2g0287271 34.106 302 154 10 11 274 22 316 1.04e-39 149
MsaG013797 MtrunA17_Chr8g0359091 35.000 300 154 9 11 274 23 317 1.23e-39 149
MsaG013797 MtrunA17_Chr5g0443351 33.221 298 162 8 11 274 19 313 1.53e-37 141
MsaG013797 MtrunA17_Chr2g0314321 34.076 314 155 9 11 274 22 333 8.30e-37 141
MsaG013797 MtrunA17_Chr8g0339221 29.391 279 169 4 20 274 10 284 1.57e-36 138
MsaG013797 MtrunA17_Chr6g0482681 33.445 299 160 9 11 274 86 380 5.15e-36 138
MsaG013797 MtrunA17_Chr3g0096631 33.670 297 162 8 11 274 22 316 3.57e-35 136
MsaG013797 MtrunA17_Chr8g0383451 31.633 294 173 6 19 287 3 293 5.42e-33 129
MsaG013797 MtrunA17_Chr1g0194201 30.769 299 155 10 14 274 75 359 6.34e-33 127
MsaG013797 MtrunA17_Chr2g0277011 29.874 318 167 12 14 291 90 391 2.49e-32 126
MsaG013797 MtrunA17_Chr1g0193081 30.435 299 156 10 14 274 75 359 3.55e-32 125
MsaG013797 MtrunA17_Chr7g0270371 30.100 299 157 10 14 274 75 359 3.82e-32 125
MsaG013797 MtrunA17_Chr2g0320011 29.653 317 169 13 14 291 88 389 1.78e-31 124
MsaG013797 MtrunA17_Chr2g0284091 29.524 315 172 11 14 291 40 341 1.66e-30 120
MsaG013797 MtrunA17_Chr7g0246591 29.568 301 156 11 14 274 141 425 4.25e-30 120
MsaG013797 MtrunA17_Chr8g0350311 29.114 316 172 12 14 291 139 440 1.39e-28 116
MsaG013797 MtrunA17_Chr3g0102571 36.810 163 87 4 122 275 212 367 1.64e-25 107
MsaG013797 MtrunA17_Chr3g0102571 41.111 90 46 2 20 104 38 125 2.75e-12 67.8
MsaG013797 MtrunA17_Chr3g0102601 30.198 202 123 5 86 275 10 205 5.07e-21 91.7
MsaG013797 MtrunA17_Chr6g0486031 34.459 148 85 4 154 298 277 415 1.82e-20 92.4
MsaG013797 MtrunA17_Chr8g0390341 32.432 148 88 3 154 298 290 428 1.47e-19 90.1
MsaG013797 MtrunA17_Chr8g0384301 24.126 286 165 7 13 274 298 555 5.51e-19 89.0
MsaG013797 MtrunA17_Chr8g0360761 28.251 223 108 5 54 274 12 184 2.13e-18 82.8
MsaG013797 MtrunA17_Chr8g0369241 25.424 236 131 6 13 213 138 363 1.01e-17 85.5
MsaG013797 MtrunA17_Chr8g0386981 27.094 203 124 3 11 190 405 606 1.07e-17 85.5
MsaG013797 MtrunA17_Chr3g0130151 25.373 201 124 5 14 190 244 442 2.05e-17 84.3
MsaG013797 MtrunA17_Chr5g0441691 25.602 332 184 10 6 307 60 358 3.43e-17 83.2
MsaG013797 MtrunA17_Chr1g0200601 27.157 313 164 10 9 288 25 306 6.65e-17 82.4
MsaG013797 MtrunA17_Chr4g0038501 27.751 209 120 5 8 190 14 217 8.15e-17 82.8
MsaG013797 MtrunA17_Chr1g0157131 26.599 297 157 11 15 282 76 340 1.29e-16 81.6
MsaG013797 MtrunA17_Chr3g0133541 25.118 211 127 5 10 190 303 512 1.76e-16 81.6
MsaG013797 MtrunA17_Chr5g0401371 25.253 297 181 10 12 275 113 401 5.86e-16 79.0
MsaG013797 MtrunA17_Chr1g0203881 27.010 311 155 14 10 286 37 309 9.51e-16 79.0
MsaG013797 MtrunA17_Chr1g0202831 23.256 301 179 7 11 287 408 680 1.39e-15 79.0
MsaG013797 MtrunA17_Chr7g0274941 26.071 280 153 7 20 273 22 273 1.57e-15 76.6
MsaG013797 MtrunA17_Chr4g0053821 24.896 241 140 7 73 277 142 377 2.96e-15 76.6
MsaG013797 MtrunA17_Chr6g0480541 25.077 323 170 12 10 275 894 1201 3.87e-15 77.8
MsaG013797 MtrunA17_Chr1g0205931 24.252 301 155 12 13 275 54 319 6.25e-15 76.6
MsaG013797 MtrunA17_Chr1g0170551 25.692 253 157 6 12 241 5 249 9.12e-15 76.6
MsaG013797 MtrunA17_Chr2g0326531 23.179 302 173 8 9 280 114 386 2.05e-14 74.3
MsaG013797 MtrunA17_Chr1g0190131 26.689 296 162 10 7 277 2 267 2.80e-14 72.8
MsaG013797 MtrunA17_Chr4g0030241 34.066 91 59 1 122 212 33 122 3.05e-14 70.5
MsaG013797 MtrunA17_Chr5g0402601 22.749 211 132 5 10 190 368 577 3.15e-14 74.3
MsaG013797 MtrunA17_Chr4g0053951 23.849 239 141 7 73 275 173 406 2.06e-12 68.2
MsaG013797 MtrunA17_Chr1g0210061 24.233 326 174 11 10 271 606 922 7.79e-12 67.4
MsaG013797 MtrunA17_Chr5g0432491 24.483 290 164 7 10 274 19 278 3.28e-11 64.7
MsaG013797 MtrunA17_Chr6g0480481 30.270 185 101 9 10 185 30 195 3.86e-11 62.4
MsaG013797 MtrunA17_Chr5g0440181 30.924 249 112 12 3 205 68 302 4.20e-11 63.9
MsaG013797 MtrunA17_Chr5g0440051 29.771 262 122 12 3 214 89 338 4.26e-11 63.9
MsaG013797 MtrunA17_Chr4g0051191 24.579 297 160 12 14 279 163 426 4.58e-11 64.3
MsaG013797 MtrunA17_Chr0c02g0489761 22.941 340 199 10 20 329 84 390 5.56e-11 64.3
MsaG013797 MtrunA17_Chr4g0008561 22.293 314 182 11 9 290 14 297 8.40e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013797 AT1G18040.1 58.481 395 119 6 8 380 6 377 1.25e-155 444
MsaG013797 AT1G73690.1 57.975 395 129 6 8 380 5 384 1.44e-155 444
MsaG013797 AT1G66750.1 60.000 335 108 3 11 321 10 342 1.27e-137 397
MsaG013797 AT3G48750.1 39.583 288 147 4 12 274 2 287 2.07e-59 195
MsaG013797 AT5G64960.1 35.647 317 161 5 12 287 24 338 6.37e-57 194
MsaG013797 AT1G67580.1 34.700 317 165 7 7 287 400 710 9.78e-56 196
MsaG013797 AT1G67580.2 34.700 317 165 7 7 287 400 710 9.78e-56 196
MsaG013797 AT5G10270.1 35.423 319 159 6 12 287 24 338 9.46e-55 189
MsaG013797 AT4G19110.2 34.395 314 172 7 12 295 2 311 8.05e-54 185
MsaG013797 AT4G19110.1 34.395 314 172 7 12 295 2 311 8.84e-54 185
MsaG013797 AT1G74330.3 36.392 316 163 8 11 294 118 427 7.78e-53 186
MsaG013797 AT1G74330.2 36.392 316 163 8 11 294 118 427 1.87e-52 186
MsaG013797 AT1G74330.1 36.392 316 163 8 11 294 118 427 1.96e-52 186
MsaG013797 AT1G76540.1 35.880 301 155 6 12 278 12 308 2.04e-52 177
MsaG013797 AT2G38620.2 35.390 308 152 7 12 276 2 305 2.72e-52 177
MsaG013797 AT1G18670.2 36.278 317 163 9 11 294 128 438 1.19e-51 183
MsaG013797 AT5G63370.2 32.500 320 178 6 11 293 160 478 2.05e-51 179
MsaG013797 AT5G63370.3 32.500 320 178 6 11 293 160 478 2.05e-51 179
MsaG013797 AT1G18670.1 36.278 317 163 9 11 294 128 438 2.43e-51 183
MsaG013797 AT1G18670.3 36.278 317 163 9 11 294 128 438 2.92e-51 183
MsaG013797 AT1G20930.1 35.179 307 165 5 4 278 6 310 8.18e-51 173
MsaG013797 AT1G71530.2 33.333 312 180 6 9 294 142 451 9.79e-51 177
MsaG013797 AT5G63370.7 32.500 320 178 6 11 293 294 612 3.30e-50 179
MsaG013797 AT5G63370.8 32.500 320 178 6 11 293 294 612 3.30e-50 179
MsaG013797 AT5G63370.4 32.500 320 178 6 11 293 294 612 3.30e-50 179
MsaG013797 AT5G63370.6 32.500 320 178 6 11 293 294 612 3.30e-50 179
MsaG013797 AT5G63370.1 32.500 320 178 6 11 293 294 612 3.30e-50 179
MsaG013797 AT3G01085.1 34.713 314 170 7 11 294 112 420 1.63e-49 177
MsaG013797 AT3G01085.2 34.713 314 170 7 11 294 112 420 1.63e-49 177
MsaG013797 AT3G01085.3 34.713 314 170 7 11 294 112 420 1.72e-49 177
MsaG013797 AT1G71530.1 33.333 312 180 6 9 294 142 451 2.02e-49 177
MsaG013797 AT1G10210.2 33.766 308 162 8 13 287 31 329 5.14e-49 170
MsaG013797 AT1G10210.3 33.766 308 162 8 13 287 31 329 5.14e-49 170
MsaG013797 AT1G10210.1 33.766 308 162 8 13 287 31 329 5.14e-49 170
MsaG013797 AT1G09600.1 34.713 314 169 9 11 294 160 467 6.90e-49 176
MsaG013797 AT3G54180.1 34.641 306 155 7 12 276 2 303 1.44e-48 167
MsaG013797 AT1G59580.2 33.550 307 160 8 13 281 31 331 8.51e-48 167
MsaG013797 AT1G59580.1 33.550 307 160 8 13 281 31 331 8.51e-48 167
MsaG013797 AT3G45640.1 33.333 303 162 7 20 289 44 339 1.36e-47 166
MsaG013797 AT5G39420.1 33.439 314 173 7 11 294 102 409 1.92e-47 171
MsaG013797 AT2G43790.1 35.294 289 148 8 20 276 69 350 5.14e-47 166
MsaG013797 AT4G10010.2 32.484 314 180 7 9 294 151 460 5.21e-47 170
MsaG013797 AT5G45430.1 32.343 303 176 6 12 289 2 300 5.85e-47 167
MsaG013797 AT5G45430.2 32.343 303 176 6 12 289 2 300 6.53e-47 167
MsaG013797 AT1G53050.2 33.861 316 173 8 9 294 129 438 8.16e-47 170
MsaG013797 AT1G53050.1 33.861 316 173 8 9 294 129 438 8.16e-47 170
MsaG013797 AT2G18170.1 32.588 313 166 7 13 286 31 337 1.30e-46 164
MsaG013797 AT1G54610.1 33.546 313 174 8 11 294 115 422 1.57e-46 168
MsaG013797 AT1G54610.3 33.546 313 174 8 11 294 115 422 1.57e-46 168
MsaG013797 AT1G54610.2 33.546 313 174 8 11 294 115 422 1.57e-46 168
MsaG013797 AT5G50860.2 32.704 318 176 7 11 297 111 421 2.76e-46 166
MsaG013797 AT4G36450.1 32.890 301 160 8 13 280 31 322 4.42e-46 162
MsaG013797 AT4G11330.1 33.103 290 154 7 20 276 49 331 1.20e-45 161
MsaG013797 AT5G50860.1 32.704 318 176 7 11 297 111 421 1.25e-45 166
MsaG013797 AT4G01370.1 33.564 289 152 7 20 275 49 330 2.60e-45 160
MsaG013797 AT5G44290.7 33.750 320 178 8 4 294 127 441 2.84e-45 163
MsaG013797 AT5G63610.1 32.099 405 214 13 20 366 31 432 6.26e-45 162
MsaG013797 AT5G44290.6 33.750 320 178 8 4 294 127 441 8.55e-45 164
MsaG013797 AT1G33770.1 33.974 312 174 7 11 294 138 445 1.07e-44 163
MsaG013797 AT5G44290.2 33.750 320 178 8 4 294 127 441 2.09e-44 163
MsaG013797 AT5G44290.5 33.750 320 178 8 4 294 127 441 2.09e-44 163
MsaG013797 AT5G44290.4 33.750 320 178 8 4 294 127 441 2.09e-44 163
MsaG013797 AT5G44290.1 33.750 320 178 8 4 294 127 441 2.09e-44 163
MsaG013797 AT5G44290.3 33.750 320 178 8 4 294 127 441 2.09e-44 163
MsaG013797 AT1G01560.2 33.218 289 153 7 20 275 46 327 3.65e-44 157
MsaG013797 AT5G64960.2 33.948 271 138 4 58 287 15 285 3.98e-44 159
MsaG013797 AT4G22940.1 33.871 310 156 8 16 288 105 402 7.81e-44 158
MsaG013797 AT1G57700.1 33.651 315 171 8 11 294 143 450 9.61e-44 162
MsaG013797 AT1G71530.3 33.101 287 164 6 9 269 142 426 1.16e-43 157
MsaG013797 AT2G46070.1 31.894 301 162 8 20 287 47 337 1.24e-43 156
MsaG013797 AT2G46070.3 31.894 301 162 8 20 287 81 371 1.48e-43 156
MsaG013797 AT1G07880.2 31.475 305 169 7 18 289 37 334 1.77e-43 155
MsaG013797 AT4G22940.2 33.871 310 156 8 16 288 105 402 3.01e-43 159
MsaG013797 AT1G73670.1 35.000 300 156 9 11 275 87 382 2.49e-42 156
MsaG013797 AT1G03740.2 31.153 321 185 8 4 294 203 517 5.30e-42 157
MsaG013797 AT1G03740.1 31.153 321 185 8 4 294 203 517 7.18e-42 157
MsaG013797 AT5G63370.9 33.761 234 128 3 11 217 160 393 1.19e-41 152
MsaG013797 AT4G13020.7 30.169 295 179 4 12 283 2 292 1.47e-41 150
MsaG013797 AT4G13020.6 30.169 295 179 4 12 283 2 292 2.04e-41 150
MsaG013797 AT4G13020.4 30.169 295 179 4 12 283 2 292 2.43e-41 150
MsaG013797 AT4G13020.1 30.169 295 179 4 12 283 2 292 4.87e-41 150
MsaG013797 AT1G01560.3 33.101 287 151 8 20 273 46 324 4.88e-41 148
MsaG013797 AT2G38620.4 33.459 266 152 4 12 276 2 243 8.51e-41 145
MsaG013797 AT4G13020.2 30.272 294 178 4 13 283 11 300 1.29e-40 149
MsaG013797 AT5G63370.5 33.761 234 128 3 11 217 294 527 1.29e-40 151
MsaG013797 AT5G63370.10 33.761 234 128 3 11 217 294 527 1.29e-40 151
MsaG013797 AT4G13020.3 30.272 294 178 4 13 283 11 300 1.31e-40 149
MsaG013797 AT3G59790.1 32.215 298 171 7 20 289 66 360 1.32e-40 148
MsaG013797 AT5G19010.1 34.437 302 153 10 11 274 22 316 4.46e-40 150
MsaG013797 AT2G46070.2 30.935 278 152 7 20 264 47 317 9.67e-40 144
MsaG013797 AT4G10010.1 32.042 284 161 7 39 294 1 280 2.28e-39 147
MsaG013797 AT4G13020.8 28.239 301 186 4 12 283 2 301 1.27e-38 143
MsaG013797 AT1G18150.3 34.219 301 159 9 11 276 101 397 1.39e-38 146
MsaG013797 AT1G18150.2 34.219 301 159 9 11 276 101 397 1.39e-38 146
MsaG013797 AT1G18150.1 34.219 301 159 9 11 276 101 397 1.39e-38 146
MsaG013797 AT4G13020.5 28.239 301 186 4 12 283 2 301 4.05e-38 142
MsaG013797 AT3G18040.5 33.856 319 171 10 11 294 15 328 4.72e-38 144
MsaG013797 AT3G18040.1 33.856 319 171 10 11 294 20 333 5.13e-38 144
MsaG013797 AT4G19110.3 32.812 256 141 6 70 295 1 255 5.43e-38 141
MsaG013797 AT3G18040.4 33.856 319 171 10 11 294 129 442 8.04e-38 144
MsaG013797 AT3G14720.2 34.114 299 162 8 11 276 22 318 8.70e-38 141
MsaG013797 AT3G14720.3 34.114 299 162 8 11 276 22 318 8.70e-38 141
MsaG013797 AT3G18040.3 33.856 319 171 10 11 294 129 442 1.33e-37 144
MsaG013797 AT3G14720.1 34.343 297 160 8 11 274 22 316 1.47e-37 143
MsaG013797 AT2G42880.2 33.333 297 163 8 11 274 22 316 1.99e-36 139
MsaG013797 AT3G05050.3 28.205 351 211 7 11 322 135 483 2.33e-36 140
MsaG013797 AT3G05050.2 28.205 351 211 7 11 322 135 483 2.33e-36 140
MsaG013797 AT3G05050.1 28.205 351 211 7 11 322 135 483 2.33e-36 140
MsaG013797 AT2G01450.3 32.215 298 165 8 11 274 13 307 3.14e-36 138
MsaG013797 AT2G01450.1 32.215 298 165 8 11 274 13 307 3.14e-36 138
MsaG013797 AT2G01450.2 32.215 298 165 8 11 274 13 307 3.14e-36 138
MsaG013797 AT2G01450.4 32.215 298 165 8 11 274 13 307 3.14e-36 138
MsaG013797 AT2G42880.1 33.333 297 163 8 11 274 22 316 6.39e-36 139
MsaG013797 AT1G71530.4 34.884 215 113 5 9 198 142 354 9.79e-36 134
MsaG013797 AT1G53510.1 37.069 232 112 8 11 211 22 250 2.46e-35 137
MsaG013797 AT2G38620.3 34.043 235 112 4 12 205 2 234 2.87e-34 128
MsaG013797 AT2G38620.1 34.043 235 112 4 12 205 2 234 2.87e-34 128
MsaG013797 AT1G57870.1 29.968 317 168 12 14 291 82 383 5.51e-33 128
MsaG013797 AT1G57870.4 29.968 317 168 12 14 291 82 383 5.51e-33 128
MsaG013797 AT1G57870.2 29.968 317 168 12 14 291 82 383 5.51e-33 128
MsaG013797 AT1G57870.3 29.968 317 168 12 14 291 82 383 8.03e-33 128
MsaG013797 AT3G05840.2 30.435 299 156 10 14 274 73 357 4.95e-32 125
MsaG013797 AT3G05840.1 30.435 299 156 10 14 274 73 357 4.95e-32 125
MsaG013797 AT1G09840.3 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.7 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.10 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.6 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.4 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.1 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.9 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.5 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.8 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G09840.2 29.781 319 166 12 14 291 83 384 1.30e-31 124
MsaG013797 AT1G01560.4 33.491 212 110 5 20 204 46 253 1.73e-31 121
MsaG013797 AT1G01560.1 33.491 212 110 5 20 204 46 253 1.73e-31 121
MsaG013797 AT5G26751.1 30.435 299 156 10 14 274 69 353 2.16e-31 124
MsaG013797 AT1G06390.2 29.841 315 171 11 14 291 70 371 2.34e-31 124
MsaG013797 AT1G06390.1 29.841 315 171 11 14 291 70 371 2.34e-31 124
MsaG013797 AT2G30980.1 30.159 315 170 11 14 291 72 373 7.55e-31 122
MsaG013797 AT1G07880.1 31.390 223 121 6 18 213 37 254 9.63e-31 118
MsaG013797 AT5G14640.1 28.428 299 162 10 14 274 74 358 3.12e-30 120
MsaG013797 AT5G14640.2 28.428 299 162 10 14 274 74 358 3.12e-30 120
MsaG013797 AT4G00720.1 30.100 299 157 11 14 274 138 422 4.17e-30 121
MsaG013797 AT4G18710.1 29.338 317 170 13 14 291 40 341 6.07e-30 119
MsaG013797 AT3G61160.1 28.283 297 165 8 14 274 102 386 7.45e-29 117
MsaG013797 AT3G61160.4 28.283 297 165 8 14 274 102 386 8.20e-29 117
MsaG013797 AT3G61160.2 28.283 297 165 8 14 274 109 393 1.02e-28 117
MsaG013797 AT3G61160.5 28.223 287 158 8 14 264 102 376 5.14e-27 111
MsaG013797 AT4G18710.2 31.034 232 115 8 14 211 34 254 1.07e-25 105
MsaG013797 AT3G61160.3 28.216 241 126 7 14 219 102 330 2.24e-23 100
MsaG013797 AT3G61160.6 28.216 241 126 7 14 219 109 337 2.96e-23 100
MsaG013797 AT1G09840.11 30.189 265 137 11 67 291 1 257 1.01e-21 94.7
MsaG013797 AT4G28980.3 34.459 148 85 3 154 298 295 433 5.51e-20 92.0
MsaG013797 AT4G28980.1 34.459 148 85 3 154 298 295 433 5.51e-20 92.0
MsaG013797 AT4G28980.2 34.459 148 85 3 154 298 295 433 5.51e-20 92.0
MsaG013797 AT3G18040.2 30.126 239 134 8 86 294 10 245 1.38e-18 87.4
MsaG013797 AT3G13530.1 28.230 209 119 5 8 190 14 217 2.00e-17 85.1
MsaG013797 AT5G67380.2 26.087 253 145 8 62 277 118 365 8.46e-17 81.6
MsaG013797 AT1G53570.4 23.547 327 187 10 14 316 214 501 1.25e-16 82.0
MsaG013797 AT1G53570.1 23.547 327 187 10 14 316 214 501 1.25e-16 82.0
MsaG013797 AT2G41860.2 25.085 295 164 10 15 282 56 320 1.33e-16 82.0
MsaG013797 AT1G53570.7 23.547 327 187 10 14 316 214 501 1.38e-16 82.0
MsaG013797 AT3G53640.1 25.749 334 170 13 10 276 319 641 1.81e-16 81.6
MsaG013797 AT1G53570.2 23.509 285 166 7 14 274 214 470 2.59e-16 81.3
MsaG013797 AT1G53570.3 23.509 285 166 7 14 274 214 470 2.59e-16 81.3
MsaG013797 AT2G41860.1 24.746 295 165 10 15 282 56 320 2.72e-16 80.9
MsaG013797 AT5G66850.2 23.684 304 173 9 10 283 342 616 2.84e-16 81.3
MsaG013797 AT5G66850.1 23.684 304 173 9 10 283 342 616 2.90e-16 81.3
MsaG013797 AT5G12480.1 26.351 296 149 11 15 277 61 320 4.02e-16 80.5
MsaG013797 AT5G19450.2 26.190 294 152 10 15 277 59 318 4.19e-16 80.5
MsaG013797 AT5G19450.1 26.190 294 152 10 15 277 59 318 4.19e-16 80.5
MsaG013797 AT3G07980.2 27.751 209 120 5 8 190 14 217 4.49e-16 80.9
MsaG013797 AT1G53570.6 23.509 285 166 7 14 274 214 470 4.50e-16 80.5
MsaG013797 AT3G07980.1 27.751 209 120 5 8 190 14 217 4.59e-16 80.9
MsaG013797 AT5G35980.2 25.214 234 133 6 13 213 121 345 4.74e-16 80.5
MsaG013797 AT4G23650.1 25.606 289 161 8 20 282 84 344 5.96e-16 80.1
MsaG013797 AT5G35980.3 25.214 234 133 6 13 213 86 310 6.20e-16 80.5
MsaG013797 AT5G35980.1 25.214 234 133 6 13 213 121 345 7.39e-16 80.1
MsaG013797 AT2G17890.1 26.441 295 157 11 7 271 101 365 1.24e-15 79.0
MsaG013797 AT1G18890.1 25.338 296 165 9 9 277 58 324 1.95e-15 78.6
MsaG013797 AT1G13350.1 25.223 337 168 13 10 276 438 760 3.49e-15 77.8
MsaG013797 AT3G25840.2 24.699 332 175 13 10 276 351 672 3.72e-15 77.8
MsaG013797 AT1G13350.2 25.223 337 168 13 10 276 465 787 3.78e-15 77.8
MsaG013797 AT1G13350.3 25.223 337 168 13 10 276 511 833 4.21e-15 77.8
MsaG013797 AT3G50000.1 24.896 241 140 7 73 277 157 392 4.75e-15 76.6
MsaG013797 AT5G10930.1 25.602 332 186 6 10 313 8 306 5.24e-15 76.6
MsaG013797 AT5G67380.1 24.896 241 140 7 73 277 163 398 5.92e-15 76.3
MsaG013797 AT3G25840.1 24.699 332 175 13 10 276 613 934 9.79e-15 76.6
MsaG013797 AT2G23080.1 26.141 241 137 8 73 277 87 322 1.31e-14 74.7
MsaG013797 AT5G04870.1 24.843 318 176 11 20 307 156 440 8.42e-14 73.6
MsaG013797 AT5G12180.1 23.478 345 197 9 6 321 65 371 8.44e-14 73.2
MsaG013797 AT1G54960.1 23.457 324 170 12 13 303 67 345 8.63e-14 73.6
MsaG013797 AT1G54960.2 23.457 324 170 12 13 303 67 345 8.63e-14 73.6
MsaG013797 AT5G19360.1 23.460 341 194 10 6 317 60 362 1.28e-13 72.8
MsaG013797 AT1G48260.1 25.543 368 204 11 13 339 10 348 2.09e-13 72.0
MsaG013797 AT2G37840.1 23.368 291 172 6 9 275 7 270 2.60e-13 72.0
MsaG013797 AT1G53570.5 23.151 311 182 11 14 316 214 475 4.30e-13 71.2
MsaG013797 AT1G73460.2 24.611 321 174 12 10 275 854 1161 4.33e-13 71.6
MsaG013797 AT1G73460.1 24.611 321 174 12 10 275 854 1161 4.33e-13 71.6
MsaG013797 AT1G73450.1 24.922 321 173 13 10 275 837 1144 4.84e-13 71.6
MsaG013797 AT1G50240.3 25.703 249 150 8 18 241 10 248 5.62e-13 71.2
MsaG013797 AT1G50240.2 25.703 249 150 8 18 241 10 248 5.62e-13 71.2
MsaG013797 AT2G25090.1 27.303 304 151 11 1 267 1 271 9.34e-13 70.1
MsaG013797 AT1G63700.1 23.529 204 130 5 11 190 397 598 1.04e-12 70.5
MsaG013797 AT1G63700.2 23.529 204 130 5 11 190 397 598 1.04e-12 70.5
MsaG013797 AT1G09000.2 23.891 293 159 11 14 273 69 330 1.32e-12 69.7
MsaG013797 AT1G09000.1 23.891 293 159 11 14 273 69 330 1.53e-12 69.7
MsaG013797 AT3G21220.2 25.249 301 165 11 20 291 76 345 2.19e-12 68.2
MsaG013797 AT3G21220.1 25.249 301 165 11 20 291 76 345 2.19e-12 68.2
MsaG013797 AT5G57630.2 28.700 223 131 6 8 207 7 224 2.43e-12 68.6
MsaG013797 AT5G57630.1 29.126 206 118 6 8 190 7 207 2.67e-12 68.6
MsaG013797 AT2G23070.1 25.714 245 127 8 73 274 185 417 4.72e-12 67.8
MsaG013797 AT2G45490.1 23.077 286 161 9 20 280 28 279 9.40e-12 65.9

Find 83 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGAACATAATATTTA+AGG 0.122687 3:-61391460 None:intergenic
CAGCTCAAACTTGCAGATTT+TGG 0.141250 3:+61390126 MsaT013797.1:CDS
ATCTTGGTTTACCTCTAAAA+AGG 0.176724 3:-61390937 None:intergenic
TTTGGTTTATCGCAGATATT+TGG 0.227229 3:+61390144 MsaT013797.1:CDS
CTGGTAATGGTGGGTCTATT+TGG 0.244236 3:-61391992 None:intergenic
TGCACTGAAATTCTAGCATT+TGG 0.272657 3:-61391572 None:intergenic
GCATCTTGTGTTTGAATTCA+TGG 0.280317 3:+61389939 MsaT013797.1:CDS
TACACTTGAACCATACTTCT+TGG 0.285559 3:-61390865 None:intergenic
TCCCTCTTGGGAACAGGTCT+TGG 0.301768 3:-61391737 None:intergenic
AACTTGTTGATAGGACAAAA+TGG 0.313019 3:+61390102 MsaT013797.1:intron
ATGGTTCAAGTGTAGATGTT+TGG 0.342474 3:+61390874 MsaT013797.1:CDS
TTGTTTGGCGCCAAGAAGTA+TGG 0.354073 3:+61390855 MsaT013797.1:CDS
TCAATCAAATCAACAATGTT+TGG 0.361677 3:-61389892 None:intergenic
ATAAAGAAACAAACCTGATC+AGG 0.379338 3:-61390186 None:intergenic
TGGTTCAAGTGTAGATGTTT+GGG 0.382625 3:+61390875 MsaT013797.1:CDS
CCCTCGAATGAATTCAGATC+TGG 0.384385 3:-61391770 None:intergenic
CTGTTCCCAAGAGGGAATCT+AGG 0.390172 3:+61391744 MsaT013797.1:CDS
GATGCAAATTCTGTTTATAG+TGG 0.398454 3:-61389921 None:intergenic
TATTTAAGGTACATCATATC+AGG 0.398524 3:-61391446 None:intergenic
CAGACAGTTGGCGATAATAC+TGG 0.401568 3:+61391914 MsaT013797.1:CDS
AGAGCGCCTGAGCTATTGTT+TGG 0.423515 3:+61390840 MsaT013797.1:CDS
CTAGATTCCCTCTTGGGAAC+AGG 0.432961 3:-61391743 None:intergenic
GACCTTGTAGTATCATTAGA+AGG 0.436541 3:-61390029 None:intergenic
GATCAGGGAACTCGTGATCT+TGG 0.438556 3:-61390170 None:intergenic
TATCTAAAGCGTGAAGTTCT+CGG 0.454861 3:+61388902 MsaT013797.1:CDS
AGATCACGAGTTCCCTGATC+AGG 0.454961 3:+61390173 MsaT013797.1:CDS
TGGTTGCAATTAAGAAGATT+CGG 0.468473 3:+61389791 MsaT013797.1:CDS
TTGGAAATGAAGAACGCAGC+GGG 0.485618 3:-61391499 None:intergenic
TCATGGACAGACAGGACAAA+TGG 0.489222 3:+61389771 MsaT013797.1:intron
GGGACCCTAGATTCCCTCTT+GGG 0.495309 3:-61391749 None:intergenic
CAATTAAGAAGATTCGGAAT+CGG 0.499786 3:+61389797 MsaT013797.1:CDS
GAATATTGTTTACCTGGTAA+TGG 0.500796 3:-61392005 None:intergenic
CAAATAGACCCACCATTACC+AGG 0.506685 3:+61391993 MsaT013797.1:CDS
TTGAAGCTGTTATAAGAGAC+AGG 0.506826 3:+61389971 MsaT013797.1:CDS
TGGGACCCTAGATTCCCTCT+TGG 0.507591 3:-61391750 None:intergenic
CCAAGGTGTGATGGATTTGA+AGG 0.509344 3:+61391842 MsaT013797.1:CDS
GTAAAATTCACTCCGTCTAT+CGG 0.513158 3:-61389829 None:intergenic
TTTGAAGGCAATTCGTTGGA+AGG 0.516791 3:+61391857 MsaT013797.1:CDS
TACATTAATAGGCATTTGCT+CGG 0.518316 3:+61390811 MsaT013797.1:intron
TTTCAAAGCCATCGATACTC+AGG 0.518401 3:+61388946 MsaT013797.1:CDS
GCTGCGTTCTTCATTTCCAA+TGG 0.520325 3:+61391502 MsaT013797.1:CDS
TTGGCGCCAAACAATAGCTC+AGG 0.527914 3:-61390846 None:intergenic
GGTAATTTCAAACAGACAGT+TGG 0.530329 3:+61391902 MsaT013797.1:CDS
GTTCTCGGTGAAGGTACCTA+TGG 0.532980 3:+61388917 MsaT013797.1:CDS
AGGTAAGATTTAATATCAGC+TGG 0.534016 3:-61390009 None:intergenic
AAAGCATCATCACTTGCCAT+TGG 0.534955 3:-61391518 None:intergenic
CAGGCCACTGAGAAGGTGAT+GGG 0.535243 3:-61391427 None:intergenic
TGGATTTGAAGGCAATTCGT+TGG 0.536482 3:+61391853 MsaT013797.1:CDS
CTTCCGTGTTTGATGTGTAT+CGG 0.536847 3:-61391384 None:intergenic
CCCAGATCTGAATTCATTCG+AGG 0.546906 3:+61391769 MsaT013797.1:CDS
AAAATTTAGTGACATTGGTG+TGG 0.549116 3:-61391948 None:intergenic
TGCTAGAATTTCAGTGCAGA+AGG 0.550051 3:+61391577 MsaT013797.1:CDS
TGGATCTGTGGGCGGAGGTG+CGG 0.553888 3:-61391705 None:intergenic
GATAAGATTGATGATAATGC+TGG 0.555397 3:+61391881 MsaT013797.1:CDS
CGGATTGATGAACCGATAGA+CGG 0.557647 3:+61389817 MsaT013797.1:CDS
AATTCTAGCATTTGGATCGT+AGG 0.558175 3:-61391564 None:intergenic
AAATTTAGTGACATTGGTGT+GGG 0.558497 3:-61391947 None:intergenic
TCAGGCCACTGAGAAGGTGA+TGG 0.561232 3:-61391428 None:intergenic
TATTGTTTACCTGGTAATGG+TGG 0.564583 3:-61392002 None:intergenic
CCTCGAATGAATTCAGATCT+GGG 0.568344 3:-61391769 None:intergenic
TCCAAGACCTGTTCCCAAGA+GGG 0.571617 3:+61391736 MsaT013797.1:CDS
AAGCGTGAAGTTCTCGGTGA+AGG 0.573837 3:+61388908 MsaT013797.1:CDS
TGTTCCCAAGAGGGAATCTA+GGG 0.573959 3:+61391745 MsaT013797.1:CDS
ATTGTTTACCTGGTAATGGT+GGG 0.576975 3:-61392001 None:intergenic
ATTTAATATCAGCTGGCGAA+AGG 0.584233 3:-61390002 None:intergenic
CCTTCAAATCCATCACACCT+TGG 0.585893 3:-61391842 None:intergenic
AAAGTGATGCCAAGGTGTGA+TGG 0.588215 3:+61391833 MsaT013797.1:CDS
GAAAGCAACCTGAGTATCGA+TGG 0.589074 3:-61388954 None:intergenic
AGATTAGAAAAGTGATGCCA+AGG 0.592616 3:+61391825 MsaT013797.1:CDS
ATCATATCAGGCCACTGAGA+AGG 0.594203 3:-61391434 None:intergenic
TAAAGAAACAAACCTGATCA+GGG 0.598584 3:-61390185 None:intergenic
TGCAGAAGGCATTAGAACAT+AGG 0.610145 3:+61391591 MsaT013797.1:CDS
GAACCCCATCACCTTCTCAG+TGG 0.622014 3:+61391423 MsaT013797.1:CDS
GGCTTTGAAAACGACACCAT+AGG 0.627591 3:-61388933 None:intergenic
CCAGATCTGAATTCATTCGA+GGG 0.628522 3:+61391770 MsaT013797.1:CDS
TACCTTCTAATGATACTACA+AGG 0.641736 3:+61390027 MsaT013797.1:CDS
ATTAATAGGCATTTGCTCGG+TGG 0.654143 3:+61390814 MsaT013797.1:intron
TTCCAAGACCTGTTCCCAAG+AGG 0.663672 3:+61391735 MsaT013797.1:CDS
GGAAATGAAGAACGCAGCGG+GGG 0.666395 3:-61391497 None:intergenic
TGGAAATGAAGAACGCAGCG+GGG 0.680754 3:-61391498 None:intergenic
CGACCGATACACATCAAACA+CGG 0.690022 3:+61391381 MsaT013797.1:CDS
AGGCCACTGAGAAGGTGATG+GGG 0.700265 3:-61391426 None:intergenic
ATTGGAAATGAAGAACGCAG+CGG 0.739277 3:-61391500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 61388863 61392130 61388863 ID=MsaG013797
Chr3 mRNA 61388863 61392130 61388863 ID=MsaT013797.1;Parent=MsaG013797
Chr3 exon 61388863 61388967 61388863 ID=MsaT013797.1.exon1;Parent=MsaT013797.1
Chr3 CDS 61388863 61388967 61388863 ID=cds.MsaT013797.1;Parent=MsaT013797.1
Chr3 exon 61389781 61390048 61389781 ID=MsaT013797.1.exon2;Parent=MsaT013797.1
Chr3 CDS 61389781 61390048 61389781 ID=cds.MsaT013797.1;Parent=MsaT013797.1
Chr3 exon 61390115 61390194 61390115 ID=MsaT013797.1.exon3;Parent=MsaT013797.1
Chr3 CDS 61390115 61390194 61390115 ID=cds.MsaT013797.1;Parent=MsaT013797.1
Chr3 exon 61390822 61390947 61390822 ID=MsaT013797.1.exon4;Parent=MsaT013797.1
Chr3 CDS 61390822 61390947 61390822 ID=cds.MsaT013797.1;Parent=MsaT013797.1
Chr3 exon 61391377 61391612 61391377 ID=MsaT013797.1.exon5;Parent=MsaT013797.1
Chr3 CDS 61391377 61391612 61391377 ID=cds.MsaT013797.1;Parent=MsaT013797.1
Chr3 exon 61391694 61392014 61391694 ID=MsaT013797.1.exon6;Parent=MsaT013797.1
Chr3 CDS 61391694 61392014 61391694 ID=cds.MsaT013797.1;Parent=MsaT013797.1
Chr3 exon 61392073 61392130 61392073 ID=MsaT013797.1.exon7;Parent=MsaT013797.1
Chr3 CDS 61392073 61392130 61392073 ID=cds.MsaT013797.1;Parent=MsaT013797.1
Gene Sequence

>MsaT013797.1

ATGGAAGAAGTGAATCCGTGTAAAAAATTAGCAGATAGGTATCTAAAGCGTGAAGTTCTCGGTGAAGGTACCTATGGTGTCGTTTTCAAAGCCATCGATACTCAGACAGGACAAATGGTTGCAATTAAGAAGATTCGGAATCGGATTGATGAACCGATAGACGGAGTGAATTTTACAGCTCTTCGAGAAATTAAGCTTCTCAAAGAGCTCAAACATCCAAACATTGTTGATTTGATTGATGTATTCCACTATAAACAGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGATCTTGAAGCTGTTATAAGAGACAGGAATATTTTCCTTTCGCCAGCTGATATTAAATCTTACCTTCTAATGATACTACAAGGACAAAATGGACAGCTCAAACTTGCAGATTTTGGTTTATCGCAGATATTTGGAGACCAAGATCACGAGTTCCCTGATCAGGCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTGTTTGGCGCCAAGAAGTATGGTTCAAGTGTAGATGTTTGGGCTACAGCTTGTGTATTTGCTGAACTTCTTCTTCGTAGACCCTTTTTAGAGGGTTCGACCGATACACATCAAACACGGAAGATTTTCACAGCATTTGGAACCCCATCACCTTCTCAGTGGCCTGATATGATGTACCTTAAATATTATGTTCAAGAAAAATATATTCTTGCACCCCCGCTGCGTTCTTCATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACCTACGATCCAAATGCTAGAATTTCAGTGCAGAAGGCATTAGAACATAGGTACTTTTCTTCCGCACCTCCGCCCACAGATCCAGAAAAGCTTCCAAGACCTGTTCCCAAGAGGGAATCTAGGGTCCCAGATCTGAATTCATTCGAGGGTCTCTCTCACTTTCAATTATCACCTTCTAGAAAGATTAGAAAAGTGATGCCAAGGTGTGATGGATTTGAAGGCAATTCGTTGGAAGGCGATAAGATTGATGATAATGCTGGTAATTTCAAACAGACAGTTGGCGATAATACTGGCATGAATGAGCCCACACCAATGTCACTAAATTTTTCTGTCTTTGGATTAAAAGCTCCAAATAGACCCACCATTACCAGTGTGTCAAGCTTGTCAAACAAAAAATCAAATAATATTATTCTTGAGCTTAATGATTAA
Protein sequence

>MsaT013797.1

MEEVNPCKKLADRYLKREVLGEGTYGVVFKAIDTQTGQMVAIKKIRNRIDEPIDGVNFTALREIKLLKELKHPNIVDLIDVFHYKQNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLLMILQGQNGQLKLADFGLSQIFGDQDHEFPDQAFARWYRAPELLFGAKKYGSSVDVWATACVFAELLLRRPFLEGSTDTHQTRKIFTAFGTPSPSQWPDMMYLKYYVQEKYILAPPLRSSFPMASDDALDLLSKMFTYDPNARISVQKALEHRYFSSAPPPTDPEKLPRPVPKRESRVPDLNSFEGLSHFQLSPSRKIRKVMPRCDGFEGNSLEGDKIDDNAGNFKQTVGDNTGMNEPTPMSLNFSVFGLKAPNRPTITSVSSLSNKKSNNIILELND*