AlfalfaGEDB | MsaG013825

M. sativa ssp. caerulea / MsaG013825

KEGG: K09422
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013825	XP_003600125.1	84.337	498	41	4	102	569	40	530	0.0	736

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013825	sp\|Q9S773\|MYB97_ARATH	37.111	450	196	16	100	544	17	384	1.17e-63	216

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013825	tr\|G7IY34\|G7IY34_MEDTR	84.337	498	41	4	102	569	40	530	0.0	736

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013825	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013825	MtrunA17_Chr3g0099131	83.101	503	45	4	102	569	41	538	0.0	736
MsaG013825	MtrunA17_Chr8g0354661	78.095	105	23	0	100	204	35	139	6.85e-53	189
MsaG013825	MtrunA17_Chr3g0080861	73.333	105	28	0	100	204	35	139	1.08e-51	185
MsaG013825	MtrunA17_Chr3g0099141	89.412	85	9	0	102	186	40	124	5.81e-50	169
MsaG013825	MtrunA17_Chr1g0154031	66.055	109	37	0	102	210	76	184	6.56e-47	169
MsaG013825	MtrunA17_Chr2g0322521	76.699	103	24	0	102	204	29	131	1.26e-45	166
MsaG013825	MtrunA17_Chr5g0410961	59.434	106	43	0	99	204	9	114	2.96e-42	155
MsaG013825	MtrunA17_Chr2g0281071	61.165	103	40	0	102	204	13	115	1.72e-41	152
MsaG013825	MtrunA17_Chr4g0048511	52.846	123	52	1	102	218	13	135	4.36e-41	152
MsaG013825	MtrunA17_Chr7g0228231	57.282	103	44	0	102	204	14	116	7.56e-41	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013825	AT4G26930.1	37.111	450	196	16	100	544	17	384	1.19e-64	216
MsaG013825	AT2G32460.1	33.137	510	262	19	102	569	18	490	6.60e-56	196
MsaG013825	AT2G32460.2	32.941	510	263	19	102	569	6	478	6.95e-56	196
MsaG013825	AT5G06100.1	81.553	103	19	0	102	204	32	134	5.87e-54	190
MsaG013825	AT5G06100.5	81.553	103	19	0	102	204	32	134	2.56e-53	190
MsaG013825	AT5G06100.2	81.553	103	19	0	102	204	32	134	2.56e-53	190
MsaG013825	AT5G06100.3	81.553	103	19	0	102	204	32	134	2.56e-53	190
MsaG013825	AT5G06100.4	81.553	103	19	0	102	204	32	134	2.56e-53	190
MsaG013825	AT3G11440.2	78.846	104	22	0	101	204	40	143	3.36e-53	188
MsaG013825	AT3G11440.3	76.147	109	26	0	96	204	35	143	2.43e-52	188

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Find 134 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACGGTTGCTACACT+TGG	0.436046	3:-61879665	MsaT013825.1:CDS
AAAATAAGCAATGGTGGGAG+GGG	0.472625	3:-61884662	None:intergenic
AAACAACGGTTGCTACACTT+GGG	0.612073	3:-61879664	MsaT013825.1:CDS
AAACTTGAGTTGTATTGAAT+TGG	0.271785	3:+61881049	None:intergenic
AAAGAGTTGTAGGCTTAGAT+GGG	0.598349	3:-61882225	MsaT013825.1:CDS
AAAGTGAAAGAGAGATGTGA+AGG	0.660536	3:+61881223	None:intergenic
AAATGCACCTTTCTTCAAAT+TGG	0.138440	3:+61882187	None:intergenic
AAATTGGTGGGTGGGAAGCT+AGG	0.499341	3:-61884531	MsaT013825.1:intron
AACCTTAATTAACAGAGTTC+AGG	0.434354	3:+61879633	None:intergenic
AACTTTGGTGTAATGTTGTT+AGG	0.282244	3:+61881451	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	61879641	61884674	61879641	ID=MsaG013825
Chr3	mRNA	61879641	61884674	61879641	ID=MsaT013825.1;Parent=MsaG013825
Chr3	exon	61879641	61879963	61879641	ID=MsaT013825.1.exon7;Parent=MsaT013825.1
Chr3	CDS	61879641	61879963	61879641	ID=cds.MsaT013825.1;Parent=MsaT013825.1
Chr3	exon	61880705	61881481	61880705	ID=MsaT013825.1.exon6;Parent=MsaT013825.1
Chr3	CDS	61880705	61881481	61880705	ID=cds.MsaT013825.1;Parent=MsaT013825.1
Chr3	exon	61881581	61881635	61881581	ID=MsaT013825.1.exon5;Parent=MsaT013825.1
Chr3	CDS	61881581	61881635	61881581	ID=cds.MsaT013825.1;Parent=MsaT013825.1
Chr3	exon	61882112	61882354	61882112	ID=MsaT013825.1.exon4;Parent=MsaT013825.1
Chr3	CDS	61882112	61882354	61882112	ID=cds.MsaT013825.1;Parent=MsaT013825.1
Chr3	exon	61883634	61883734	61883634	ID=MsaT013825.1.exon3;Parent=MsaT013825.1
Chr3	CDS	61883634	61883734	61883634	ID=cds.MsaT013825.1;Parent=MsaT013825.1
Chr3	exon	61884352	61884419	61884352	ID=MsaT013825.1.exon2;Parent=MsaT013825.1
Chr3	CDS	61884352	61884419	61884352	ID=cds.MsaT013825.1;Parent=MsaT013825.1
Chr3	exon	61884532	61884674	61884532	ID=MsaT013825.1.exon1;Parent=MsaT013825.1
Chr3	CDS	61884532	61884674	61884532	ID=cds.MsaT013825.1;Parent=MsaT013825.1

Gene Sequence

>MsaT013825.1

ATGGTGGGAGGGGATGTTCAGCTAATTGAGTTCTTGGTCACCACAGCTTGTGGCGGCGAGGAGGAAGACTTGGGTTCAGATTTTCGGTGTCCCTCTTCAAGTGTGAGAGGAGACTTTTTCCAAATTGGTGGGTGGGAAGCTAGAGTCATGGGGGCGGTTTATACCCTATTGGTGGTGGAGGAGATGAGGGGAGGGGCGGAAGAAGTGGCAGGCACTTGGAGACTTCATGCTTCATTTAAAATATTGCACATGCCTTTCCTTCTTTTCCTGTACGTGTGGCACTTTAGGCAAGTGCATATCCTCATGTATGAGGGTCCTTGGACAACAGCAGAGGATACAATTTTGATAGATTATGTGACAAAGCATGGTGAAGGGAATTGGAATGCAGTTCAAAGAAATACTGGTTTGAATCGTTGTGGAAAGAGTTGTAGGCTTAGATGGGCTAATCATTTAAGACCCAATTTGAAGAAAGGTGCATTTTCTCCTGAAGAAGAGAAACTCATTGTTGAACTTCATGCTCAATTTGGTAACAAATGGGCTCGAATGGCTGCTTTGTTACCTGGAAGAATGCATAATGAAATAAAGAACTACTGGAACACAAGAATCAAACGAACAAACCCTAACAACATTACACCAAAGTTTGAGTTTTTCAATCAAAACCACCACCAATATCAACAACAACAACAACAACAACAACAACAACAACACCTTCACCCTTTATCCCCAACACCAACTCATCATCATTCTCCTCTCTCTTCACCACTCCAACATAGACAACAACGACAACATTCTTATTCTCCTCACACATTCATAGAGACTTCACCTACACCATTGCCATCTTCTTCACCTTCACATCTCTCTTTCACTTTCCAAAGACCTGCACCACTCTTATCTACACCTTTTCACTTCAAACGTTATCGTTCCAGTCCCAACTTTAGTCTTCAAGTCCCTTCCGTAACACAAAATTGCGCTTCACTCCATGATCCTTCTTTAACCTCTCATCAAGATAGTTTTAGGTTTCCAATTCAATACAACTCAAGTTTTTCTCAATACTTTCATACTCCCTTGTTGGAATCCGATCGAGGAGTTTCTTCATCGTCTTTACCTTTCTCCACAAAGTTGGAGCTACCTTCAAACCAATATTCAAGACTATCATCAGAGCAAGATGTTAAGGTTAACAATATTGAGTTCAATGATCCTAATTCTTTTCAGACCAATAATAGTGGCTTAATGGGAGATCTTTTAATGGAAGCACAAACACTAGCATCTAGTCAAAATTCAAAGAAAAGGAGTTACTTGAGCTTAAATGAAGGAAATGATATGTTTAATGGTTGCCAAAGCCTAGATGATTTCCCACTTAGCTCTGTTTACTGGTCTTCTAATTCAGGACAAAAACCAAAGGAAGAAGCACCAAACTTAAGCAAATTTATGAATGATGACATCTCAACAATGCTAACTGTGACGCCTTCTTCCACAATGCAAATTCATGATTGGAATAATAATAACAATAGCAATGCATCAGAAGTAACCAACGTTCAGTCTTCTAGTGGTGTGGTGATGGCAGATGAAAATTTTGGACTTGATATCAAGCCTATAGCTTCATTGTTTCCTCTCACAAACACAACAAATAATAGTAATGATGATAATAATAATAATAATAATGAAAACAACGGTTGCTACACTTGGGACAATTTACCTGAACTCTGTTAA

Protein sequence

>MsaT013825.1

MVGGDVQLIEFLVTTACGGEEEDLGSDFRCPSSSVRGDFFQIGGWEARVMGAVYTLLVVEEMRGGAEEVAGTWRLHASFKILHMPFLLFLYVWHFRQVHILMYEGPWTTAEDTILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVELHAQFGNKWARMAALLPGRMHNEIKNYWNTRIKRTNPNNITPKFEFFNQNHHQYQQQQQQQQQQQHLHPLSPTPTHHHSPLSSPLQHRQQRQHSYSPHTFIETSPTPLPSSSPSHLSFTFQRPAPLLSTPFHFKRYRSSPNFSLQVPSVTQNCASLHDPSLTSHQDSFRFPIQYNSSFSQYFHTPLLESDRGVSSSSLPFSTKLELPSNQYSRLSSEQDVKVNNIEFNDPNSFQTNNSGLMGDLLMEAQTLASSQNSKKRSYLSLNEGNDMFNGCQSLDDFPLSSVYWSSNSGQKPKEEAPNLSKFMNDDISTMLTVTPSSTMQIHDWNNNNNSNASEVTNVQSSSGVVMADENFGLDIKPIASLFPLTNTTNNSNDDNNNNNNENNGCYTWDNLPELC*