AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG013856


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013856 MtrunA17_Chr8g0355091 86.498 237 32 0 1 237 1 237 1.05e-155 431
MsaG013856 MtrunA17_Chr3g0099421 91.284 218 19 0 1 218 26 243 2.98e-149 416
MsaG013856 MtrunA17_Chr2g0292791 89.030 237 26 0 1 237 1 237 5.51e-148 412
MsaG013856 MtrunA17_Chr1g0206721 88.532 218 25 0 1 218 1 218 5.63e-146 407
MsaG013856 MtrunA17_Chr1g0206701 85.654 237 34 0 1 237 1 237 6.21e-145 404
MsaG013856 MtrunA17_Chr1g0149391 84.810 237 36 0 1 237 1 237 1.38e-138 388
MsaG013856 MtrunA17_Chr3g0099411 82.648 219 19 1 1 219 1 200 1.38e-129 365
MsaG013856 MtrunA17_Chr1g0206691 78.182 220 48 0 18 237 1 220 4.23e-129 363
MsaG013856 MtrunA17_Chr2g0300441 70.886 237 68 1 1 237 1 236 4.04e-120 341
MsaG013856 MtrunA17_Chr1g0206991 86.885 183 24 0 1 183 1 183 4.01e-119 337
MsaG013856 MtrunA17_Chr1g0208561 72.340 235 47 3 1 225 1 227 1.18e-117 335
MsaG013856 MtrunA17_Chr3g0089141 71.064 235 50 3 1 225 1 227 2.71e-116 331
MsaG013856 MtrunA17_Chr1g0187361 70.222 225 67 0 1 225 1 225 4.70e-115 328
MsaG013856 MtrunA17_Chr2g0317451 65.678 236 81 0 1 236 1 236 2.51e-114 327
MsaG013856 MtrunA17_Chr2g0317481 65.678 236 81 0 1 236 1 236 7.19e-114 325
MsaG013856 MtrunA17_Chr5g0422941 64.557 237 84 0 1 237 1 237 2.92e-113 324
MsaG013856 MtrunA17_Chr1g0188671 68.889 225 70 0 1 225 39 263 9.88e-113 324
MsaG013856 MtrunA17_Chr2g0325971 71.064 235 50 3 1 225 1 227 2.51e-112 321
MsaG013856 MtrunA17_Chr1g0208581 69.362 235 54 3 1 225 1 227 4.86e-110 315
MsaG013856 MtrunA17_Chr5g0419601 66.667 237 79 0 1 237 1 237 7.22e-107 308
MsaG013856 MtrunA17_Chr5g0422421 66.667 225 75 0 1 225 1 225 1.64e-106 307
MsaG013856 MtrunA17_Chr7g0238991 67.757 214 68 1 24 237 36 248 4.68e-103 298
MsaG013856 MtrunA17_Chr3g0089151 75.194 129 32 0 1 129 1 129 1.20e-66 202
MsaG013856 MtrunA17_Chr2g0300421 65.854 164 53 3 1 162 1 163 1.68e-66 203
MsaG013856 MtrunA17_Chr3g0085241 51.852 189 81 1 3 191 35 213 5.38e-64 199
MsaG013856 MtrunA17_Chr3g0119901 57.792 154 65 0 7 160 7 160 7.51e-62 192
MsaG013856 MtrunA17_Chr3g0111931 69.608 102 31 0 21 122 2 103 1.40e-45 147
MsaG013856 MtrunA17_Chr2g0333981 39.306 173 95 2 5 174 8 173 1.54e-39 134
MsaG013856 MtrunA17_Chr8g0379021 40.462 173 89 3 5 170 8 173 2.60e-39 134
MsaG013856 MtrunA17_Chr1g0187351 83.333 66 11 0 18 83 1 66 4.52e-34 117
MsaG013856 MtrunA17_Chr4g0018951 45.161 155 73 3 5 159 8 150 9.72e-34 119
MsaG013856 MtrunA17_Chr4g0071601 38.587 184 93 4 5 175 8 184 7.76e-32 115
MsaG013856 MtrunA17_Chr3g0111841 84.746 59 9 0 15 73 2 60 8.54e-30 106
MsaG013856 MtrunA17_Chr1g0175601 46.847 111 56 2 9 118 2 110 3.13e-25 97.8
MsaG013856 MtrunA17_Chr1g0169761 62.319 69 26 0 9 77 2 70 9.47e-25 96.7
MsaG013856 MtrunA17_Chr8g0376821 62.319 69 26 0 9 77 2 70 1.90e-24 95.9
MsaG013856 MtrunA17_Chr1g0180591 49.515 103 50 2 9 109 2 104 2.16e-24 95.5
MsaG013856 MtrunA17_Chr3g0111831 70.492 61 18 0 16 76 11 71 3.05e-24 92.4
MsaG013856 MtrunA17_Chr4g0074101 41.379 116 53 2 9 109 2 117 1.50e-23 94.0
MsaG013856 MtrunA17_Chr1g0175611 55.128 78 35 0 9 86 2 79 2.05e-23 92.8
MsaG013856 MtrunA17_Chr8g0356071 40.909 132 66 3 9 135 2 126 2.35e-23 92.4
MsaG013856 MtrunA17_Chr8g0357771 46.535 101 52 1 9 109 2 100 4.24e-23 92.4
MsaG013856 MtrunA17_Chr4g0052061 40.708 113 64 2 9 120 2 112 1.89e-20 84.7
MsaG013856 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 3.02e-19 83.2
MsaG013856 MtrunA17_Chr4g0049901 57.576 66 28 0 10 75 29 94 6.39e-19 82.4
MsaG013856 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 7.10e-19 82.4
MsaG013856 MtrunA17_Chr4g0057151 49.315 73 37 0 10 82 3 75 2.72e-18 80.1
MsaG013856 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 5.82e-18 78.6
MsaG013856 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.10e-17 79.0
MsaG013856 MtrunA17_Chr5g0412271 29.858 211 129 6 9 201 2 211 1.26e-17 79.0
MsaG013856 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 1.75e-17 79.0
MsaG013856 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.35e-17 76.6
MsaG013856 MtrunA17_Chr8g0345001 33.951 162 94 3 8 163 17 171 2.44e-17 77.0
MsaG013856 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 2.59e-17 77.4
MsaG013856 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 2.59e-17 78.2
MsaG013856 MtrunA17_Chr2g0284911 45.349 86 46 1 9 94 17 101 4.14e-17 78.2
MsaG013856 MtrunA17_Chr3g0134451 37.008 127 72 4 9 129 2 126 5.78e-17 78.6
MsaG013856 MtrunA17_Chr5g0412461 48.529 68 35 0 9 76 2 69 8.64e-17 76.6
MsaG013856 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.01e-16 76.6
MsaG013856 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.05e-16 76.6
MsaG013856 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.25e-16 76.3
MsaG013856 MtrunA17_Chr7g0246431 50.746 67 33 0 10 76 3 69 2.33e-16 75.1
MsaG013856 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 2.53e-16 75.9
MsaG013856 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 3.69e-16 75.5
MsaG013856 MtrunA17_Chr3g0093131 33.571 140 82 5 26 159 36 170 7.50e-16 73.2
MsaG013856 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 8.59e-16 74.3
MsaG013856 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 9.51e-16 73.6
MsaG013856 MtrunA17_Chr5g0420081 35.514 107 57 3 9 103 2 108 9.85e-16 73.9
MsaG013856 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.08e-15 73.9
MsaG013856 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.12e-15 73.9
MsaG013856 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.20e-15 73.6
MsaG013856 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 1.81e-15 69.3
MsaG013856 MtrunA17_Chr3g0122251 42.268 97 53 1 9 105 2 95 2.25e-15 73.2
MsaG013856 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.11e-15 69.3
MsaG013856 MtrunA17_Chr2g0308251 46.575 73 39 0 9 81 2 74 4.03e-15 68.6
MsaG013856 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 4.87e-15 72.0
MsaG013856 MtrunA17_Chr7g0246381 48.485 66 29 1 9 69 2 67 6.48e-15 67.4
MsaG013856 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 6.70e-15 71.2
MsaG013856 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.20e-14 68.2
MsaG013856 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.28e-14 67.4
MsaG013856 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 1.43e-14 70.9
MsaG013856 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 1.68e-14 66.2
MsaG013856 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.28e-14 70.1
MsaG013856 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 2.41e-14 68.9
MsaG013856 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 4.13e-14 68.9
MsaG013856 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 4.53e-14 68.2
MsaG013856 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.52e-13 67.8
MsaG013856 MtrunA17_Chr4g0060841 28.977 176 103 9 9 172 2 167 2.23e-12 65.5
MsaG013856 MtrunA17_Chr4g0018421 28.272 191 110 7 9 194 2 170 3.06e-12 63.5
MsaG013856 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 1.09e-11 60.5
MsaG013856 MtrunA17_Chr4g0025531 32.867 143 85 3 5 147 5 136 3.57e-11 61.2
MsaG013856 MtrunA17_Chr1g0166611 44.156 77 42 1 20 95 17 93 4.39e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013856 AT5G60440.1 53.723 188 80 3 5 189 3 186 1.97e-61 195
MsaG013856 AT2G24840.1 49.080 163 72 4 6 162 60 217 8.57e-44 148
MsaG013856 AT1G65360.1 39.683 189 107 3 5 192 3 185 2.82e-41 141
MsaG013856 AT1G01530.1 42.188 192 99 4 4 192 2 184 9.54e-41 140
MsaG013856 AT4G36590.1 46.341 164 78 4 5 160 3 164 1.07e-38 135
MsaG013856 AT2G34440.1 36.646 161 100 2 9 169 2 160 7.07e-28 104
MsaG013856 AT3G66656.1 43.697 119 63 1 9 123 2 120 3.61e-25 97.8
MsaG013856 AT3G04100.1 34.356 163 101 4 2 159 7 168 5.46e-25 98.2
MsaG013856 AT1G72350.1 56.164 73 30 1 9 81 43 113 1.05e-21 90.1
MsaG013856 AT1G28460.1 28.571 161 111 2 5 163 4 162 1.04e-19 83.6
MsaG013856 AT4G22950.2 50.649 77 38 0 10 86 3 79 1.04e-19 83.6
MsaG013856 AT4G09960.2 46.512 86 45 1 9 93 2 87 3.25e-19 83.2
MsaG013856 AT4G09960.1 46.512 86 45 1 9 93 2 87 3.59e-19 83.6
MsaG013856 AT4G09960.6 46.512 86 45 1 9 93 3 88 4.09e-19 83.2
MsaG013856 AT2G45660.2 42.718 103 52 3 10 106 3 104 4.35e-19 81.6
MsaG013856 AT4G22950.3 51.316 76 37 0 10 85 3 78 4.95e-19 82.8
MsaG013856 AT4G22950.1 51.316 76 37 0 10 85 3 78 4.95e-19 82.8
MsaG013856 AT4G09960.5 46.512 86 45 1 9 93 12 97 5.37e-19 83.2
MsaG013856 AT4G09960.3 46.512 86 45 1 9 93 28 113 7.67e-19 83.2
MsaG013856 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.08e-18 82.4
MsaG013856 AT2G45660.1 42.718 103 52 3 10 106 3 104 1.35e-18 81.6
MsaG013856 AT4G09960.4 46.512 86 45 1 9 93 97 182 2.22e-18 82.8
MsaG013856 AT4G18960.1 43.269 104 48 2 5 108 15 107 3.10e-18 81.3
MsaG013856 AT2G22540.3 51.471 68 33 0 9 76 2 69 1.78e-17 79.0
MsaG013856 AT2G22540.1 51.471 68 33 0 9 76 2 69 1.78e-17 79.0
MsaG013856 AT5G51870.2 53.731 67 31 0 10 76 3 69 2.61e-17 77.0
MsaG013856 AT2G42830.1 47.368 76 40 0 1 76 9 84 3.36e-17 78.6
MsaG013856 AT2G42830.2 47.368 76 40 0 1 76 9 84 3.50e-17 78.6
MsaG013856 AT1G29962.1 28.743 167 103 4 5 165 4 160 3.55e-17 77.0
MsaG013856 AT5G51870.1 53.731 67 31 0 10 76 3 69 3.58e-17 77.4
MsaG013856 AT3G57230.2 47.059 68 36 0 9 76 2 69 3.61e-17 75.9
MsaG013856 AT3G61120.1 51.471 68 33 0 9 76 2 69 4.25e-17 78.2
MsaG013856 AT3G58780.1 50.704 71 35 0 6 76 14 84 4.66e-17 78.2
MsaG013856 AT3G58780.5 50.704 71 35 0 6 76 20 90 4.69e-17 78.2
MsaG013856 AT5G51870.5 50.000 72 36 0 5 76 21 92 4.81e-17 77.0
MsaG013856 AT4G24540.1 51.471 68 33 0 9 76 2 69 5.50e-17 77.4
MsaG013856 AT5G51870.4 53.731 67 31 0 10 76 3 69 6.64e-17 77.0
MsaG013856 AT5G51870.3 53.731 67 31 0 10 76 13 79 7.71e-17 77.0
MsaG013856 AT3G58780.4 50.704 71 35 0 6 76 14 84 8.24e-17 77.8
MsaG013856 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.02e-16 73.6
MsaG013856 AT5G10140.2 50.725 69 33 1 9 76 2 70 1.13e-16 75.1
MsaG013856 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.29e-16 76.6
MsaG013856 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.44e-16 74.7
MsaG013856 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.44e-16 74.7
MsaG013856 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.44e-16 74.7
MsaG013856 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.44e-16 76.3
MsaG013856 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.51e-16 75.1
MsaG013856 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.51e-16 75.9
MsaG013856 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.61e-16 75.1
MsaG013856 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MsaG013856 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MsaG013856 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MsaG013856 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MsaG013856 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MsaG013856 AT4G11880.2 50.000 72 35 1 10 80 3 74 1.82e-16 75.1
MsaG013856 AT4G11880.3 50.000 72 35 1 10 80 3 74 1.82e-16 75.1
MsaG013856 AT5G10140.1 50.725 69 33 1 9 76 2 70 1.83e-16 75.5
MsaG013856 AT5G10140.3 50.725 69 33 1 9 76 2 70 1.97e-16 75.1
MsaG013856 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.03e-16 76.6
MsaG013856 AT5G13790.2 51.471 68 33 0 9 76 2 69 2.09e-16 76.6
MsaG013856 AT3G57230.1 47.059 68 36 0 9 76 2 69 2.12e-16 76.3
MsaG013856 AT3G57230.4 47.059 68 36 0 9 76 2 69 2.12e-16 76.3
MsaG013856 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.95e-16 75.9
MsaG013856 AT1G77980.1 42.045 88 50 1 9 95 2 89 3.28e-16 77.0
MsaG013856 AT4G11880.4 50.000 72 35 1 10 80 3 74 4.02e-16 75.1
MsaG013856 AT4G11880.1 50.000 72 35 1 10 80 3 74 4.02e-16 75.1
MsaG013856 AT1G22130.1 39.130 92 55 1 9 99 2 93 4.04e-16 76.6
MsaG013856 AT5G51860.2 52.239 67 32 0 10 76 3 69 4.21e-16 74.7
MsaG013856 AT1G17310.1 53.165 79 35 1 8 86 47 123 4.61e-16 74.7
MsaG013856 AT1G69120.2 40.659 91 51 1 9 99 2 89 4.81e-16 75.1
MsaG013856 AT5G51860.1 52.239 67 32 0 10 76 3 69 5.05e-16 74.7
MsaG013856 AT1G17310.2 53.165 79 35 1 8 86 58 134 5.59e-16 74.7
MsaG013856 AT5G62165.10 49.254 67 34 0 10 76 3 69 5.62e-16 73.9
MsaG013856 AT5G62165.4 49.254 67 34 0 10 76 3 69 5.62e-16 73.9
MsaG013856 AT5G62165.3 49.254 67 34 0 10 76 3 69 5.84e-16 74.3
MsaG013856 AT5G62165.1 49.254 67 34 0 10 76 3 69 5.84e-16 74.3
MsaG013856 AT5G62165.2 49.254 67 34 0 10 76 3 69 5.84e-16 74.3
MsaG013856 AT1G77950.3 46.053 76 39 2 9 83 2 76 6.33e-16 75.1
MsaG013856 AT1G77950.2 46.053 76 39 2 9 83 2 76 6.33e-16 75.1
MsaG013856 AT1G77950.1 46.053 76 39 2 9 83 2 76 6.33e-16 75.1
MsaG013856 AT1G77950.4 46.053 76 39 2 9 83 2 76 6.33e-16 75.1
MsaG013856 AT1G26310.1 36.697 109 55 2 9 103 2 110 6.66e-16 75.1
MsaG013856 AT5G60910.1 49.296 71 33 1 9 79 2 69 6.99e-16 74.7
MsaG013856 AT2G22630.1 47.059 68 36 0 9 76 2 69 7.53e-16 74.3
MsaG013856 AT2G22630.2 47.059 68 36 0 9 76 2 69 7.53e-16 74.3
MsaG013856 AT3G54340.1 40.909 110 58 4 9 113 2 109 8.32e-16 74.3
MsaG013856 AT1G69120.1 40.659 91 51 1 9 99 2 89 9.70e-16 74.7
MsaG013856 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.12e-15 74.3
MsaG013856 AT5G15800.1 49.275 69 34 1 9 76 2 70 2.41e-15 73.6
MsaG013856 AT5G15800.2 49.275 69 34 1 9 76 2 70 3.86e-15 73.2
MsaG013856 AT2G14210.1 46.377 69 36 1 9 76 2 70 4.74e-15 72.4
MsaG013856 AT5G20240.2 47.143 70 35 1 9 76 2 71 4.86e-15 70.5
MsaG013856 AT2G22540.2 50.000 68 29 1 9 76 2 64 5.37e-15 72.0
MsaG013856 AT1G28450.1 26.286 175 123 4 5 173 4 178 5.45e-15 71.2
MsaG013856 AT2G14210.2 46.377 69 36 1 9 76 2 70 6.19e-15 72.0
MsaG013856 AT5G20240.1 47.143 70 35 1 9 76 2 71 8.76e-15 71.2
MsaG013856 AT1G24260.3 41.237 97 54 1 9 105 2 95 1.15e-14 71.2
MsaG013856 AT5G23260.4 43.299 97 47 3 2 90 9 105 1.16e-14 71.6
MsaG013856 AT5G23260.1 43.299 97 47 3 2 90 9 105 1.22e-14 71.6
MsaG013856 AT5G65050.2 46.377 69 36 1 9 76 2 70 1.41e-14 70.1
MsaG013856 AT3G02310.2 47.826 69 35 1 9 76 2 70 1.71e-14 70.1
MsaG013856 AT1G24260.2 41.237 97 54 1 9 105 2 95 1.75e-14 70.9
MsaG013856 AT3G58780.2 52.459 61 29 0 6 66 14 74 2.03e-14 70.9
MsaG013856 AT5G23260.3 44.318 88 43 2 9 90 2 89 2.25e-14 70.5
MsaG013856 AT5G23260.2 44.318 88 43 2 9 90 2 89 2.32e-14 70.9
MsaG013856 AT5G65050.5 46.377 69 36 1 9 76 2 70 2.53e-14 69.3
MsaG013856 AT5G65050.3 46.377 69 36 1 9 76 2 70 2.81e-14 69.3
MsaG013856 AT5G65050.1 46.377 69 36 1 9 76 2 70 2.93e-14 69.3
MsaG013856 AT3G58780.3 52.459 61 29 0 6 66 14 74 2.99e-14 70.9
MsaG013856 AT2G03710.3 53.571 56 26 0 9 64 2 57 4.02e-14 68.9
MsaG013856 AT3G02310.1 47.826 69 35 1 9 76 2 70 4.21e-14 70.1
MsaG013856 AT5G65060.3 46.377 69 36 1 9 76 2 70 4.32e-14 68.9
MsaG013856 AT5G65060.2 46.377 69 36 1 9 76 2 70 4.57e-14 68.6
MsaG013856 AT5G65060.1 46.377 69 36 1 9 76 2 70 5.56e-14 68.6
MsaG013856 AT1G24260.1 46.377 69 36 1 9 76 2 70 7.58e-14 69.3
MsaG013856 AT2G03710.1 47.143 70 35 2 9 76 2 71 9.66e-14 68.9
MsaG013856 AT2G03710.2 47.143 70 35 2 9 76 2 71 9.94e-14 68.9
MsaG013856 AT1G47760.1 41.791 67 39 0 9 75 2 68 1.24e-13 67.4
MsaG013856 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.66e-13 67.8
MsaG013856 AT5G65070.4 42.029 69 39 1 9 76 2 70 2.01e-13 65.9
MsaG013856 AT5G65070.1 42.029 69 39 1 9 76 2 70 4.59e-13 66.2
MsaG013856 AT5G65070.2 42.029 69 39 1 9 76 2 70 8.27e-13 66.2
MsaG013856 AT5G65070.5 42.029 69 39 1 9 76 2 70 8.77e-13 65.5
MsaG013856 AT2G03060.3 28.070 171 106 7 9 164 2 170 2.73e-12 65.9
MsaG013856 AT2G03060.7 28.070 171 106 7 9 164 2 170 2.73e-12 65.9
MsaG013856 AT2G03060.1 28.070 171 106 7 9 164 2 170 2.73e-12 65.9
MsaG013856 AT2G03060.2 28.070 171 106 7 9 164 2 170 2.95e-12 65.9
MsaG013856 AT5G65070.3 47.368 57 30 0 9 65 2 58 4.06e-12 64.3
MsaG013856 AT1G18750.1 25.871 201 127 5 9 188 2 201 4.54e-12 65.1
MsaG013856 AT1G18750.4 25.871 201 127 5 9 188 2 201 4.70e-12 65.1
MsaG013856 AT1G18750.3 38.961 77 44 2 9 83 2 77 5.44e-12 65.1
MsaG013856 AT5G65080.3 42.667 75 40 2 5 76 3 77 2.37e-11 61.2
MsaG013856 AT1G69540.1 33.636 110 65 3 9 117 2 104 2.52e-11 62.8
MsaG013856 AT4G37435.1 40.278 72 42 1 9 79 2 73 2.62e-11 61.2
MsaG013856 AT1G69540.2 33.636 110 65 3 9 117 2 104 2.86e-11 62.8
MsaG013856 AT2G26320.1 40.000 70 40 1 9 76 18 87 2.93e-11 59.3
MsaG013856 AT1G46408.1 36.134 119 67 4 10 119 5 123 5.24e-11 61.6
MsaG013856 AT5G65080.2 48.148 54 28 0 9 62 9 62 6.81e-11 60.5
MsaG013856 AT5G27130.1 40.000 85 47 2 2 82 6 90 7.01e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGGCCGGGACTCAATTT+TGG 0.224208 3:+62305225 MsaT013856.1:CDS
TTGGTTTGGCTTCAACAATA+TGG 0.281947 3:+62305496 MsaT013856.1:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.315191 3:-62305431 None:intergenic
TGGTGGGCTGGTCCCATTGA+TGG 0.319959 3:+62305245 MsaT013856.1:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 3:-62305088 None:intergenic
TTGTTGATCATCATGTTGAT+AGG 0.343214 3:+62305324 MsaT013856.1:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 3:+62305286 MsaT013856.1:CDS
ATGTTGAAACCTCATTGGTT+TGG 0.406166 3:+62305482 MsaT013856.1:CDS
GTCCCATTGATGGGATGAAT+CGG 0.407918 3:+62305255 MsaT013856.1:CDS
TGGTTTGGCTTCAACAATAT+GGG 0.414863 3:+62305497 MsaT013856.1:CDS
TGTTGATAGGCTTGTAATCC+AGG 0.417213 3:+62305337 MsaT013856.1:CDS
GGTGGGCTGGTCCCATTGAT+GGG 0.419749 3:+62305246 MsaT013856.1:CDS
ACCCTATGTTGAAACCTCAT+TGG 0.424971 3:+62305477 MsaT013856.1:CDS
TCTTCTCGATGTCCAGTAGC+TGG 0.437748 3:-62305172 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.442152 3:-62305041 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3:-62305279 None:intergenic
GGCCCGATTCATCCCATCAA+TGG 0.457427 3:-62305258 None:intergenic
GTGGAGGATTTGGTTGATGA+TGG 0.460225 3:-62305421 None:intergenic
AGCCACTTGTGCAAGACGGC+CGG 0.462215 3:+62305212 MsaT013856.1:CDS
ACCAATGAGGTTTCAACATA+GGG 0.462225 3:-62305478 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.480564 3:-62305280 None:intergenic
GCCACTTGTGCAAGACGGCC+GGG 0.485933 3:+62305213 MsaT013856.1:CDS
TCCCGGCCGTCTTGCACAAG+TGG 0.492110 3:-62305214 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 3:+62305280 MsaT013856.1:CDS
GGGTTCTGATAAAACTGTGC+TGG 0.499287 3:-62305458 None:intergenic
ATGATGGAGAGGCATGTTAG+AGG 0.501643 3:-62305405 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 3:-62305042 None:intergenic
GCCCGATTCATCCCATCAAT+GGG 0.506203 3:-62305257 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 3:+62305160 MsaT013856.1:CDS
AGGCTCAGATCAAAAGAATC+CGG 0.511253 3:-62305543 None:intergenic
TCCCATTGATGGGATGAATC+GGG 0.513278 3:+62305256 MsaT013856.1:CDS
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3:-62304958 None:intergenic
GCTGGAAGCATCTGAGCTTG+TGG 0.533277 3:-62305440 None:intergenic
AACCAATGAGGTTTCAACAT+AGG 0.533811 3:-62305479 None:intergenic
AGCCCACCAAAATTGAGTCC+CGG 0.536645 3:-62305231 None:intergenic
GCTCGAGCACGTTGGCGCTA+CGG 0.542366 3:-62305124 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 3:+62305034 MsaT013856.1:CDS
AACGAAAATACCTTCTCTCC+AGG 0.551818 3:-62305011 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 3:+62305524 MsaT013856.1:CDS
TCATAGATCGTTATCTATCT+CGG 0.561253 3:+62305057 MsaT013856.1:CDS
CTTTCTCAAAGCGCCGTAGT+GGG 0.568304 3:+62304922 MsaT013856.1:CDS
GGTTTGGCTTCAACAATATG+GGG 0.578983 3:+62305498 MsaT013856.1:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3:+62304960 MsaT013856.1:CDS
ACTTTCTCAAAGCGCCGTAG+TGG 0.590130 3:+62304921 MsaT013856.1:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3:-62304973 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 3:+62304835 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.603608 3:+62304831 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 3:-62305355 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 3:-62304935 None:intergenic
GGAAGCATCTGAGCTTGTGG+AGG 0.624119 3:-62305437 None:intergenic
GCTGAGCCACTTGTGCAAGA+CGG 0.626924 3:+62305208 MsaT013856.1:CDS
CGGATCCCACCCCAAAACAA+TGG 0.631700 3:+62305077 MsaT013856.1:CDS
GTTGATAGGCTTGTAATCCA+GGG 0.636489 3:+62305338 MsaT013856.1:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3:+62305097 MsaT013856.1:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3:-62305102 None:intergenic
TTGTTGAAGCCAAACCAATG+AGG 0.641506 3:-62305491 None:intergenic
GTTTGGCTTCAACAATATGG+GGG 0.642093 3:+62305499 MsaT013856.1:CDS
GGATTTGGTTGATGATGGAG+AGG 0.642684 3:-62305416 None:intergenic
CTCAGATCAAAAGAATCCGG+AGG 0.646557 3:-62305540 None:intergenic
TTTGGCTTCAACAATATGGG+GGG 0.656547 3:+62305500 MsaT013856.1:CDS
TGACCGTATCAACATTGGGG+TGG 0.665619 3:-62305037 None:intergenic
TCAGATCAAAAGAATCCGGA+GGG 0.668804 3:-62305539 None:intergenic
AGTATTGAGCTCGAGCACGT+TGG 0.675074 3:-62305132 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 3:+62304846 MsaT013856.1:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 3:-62305040 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 3:-62304974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 62304843 62305556 62304843 ID=MsaG013856
Chr3 mRNA 62304843 62305556 62304843 ID=MsaT013856.1;Parent=MsaG013856
Chr3 exon 62304843 62305556 62304843 ID=MsaT013856.1.exon1;Parent=MsaT013856.1
Chr3 CDS 62304843 62305556 62304843 ID=cds.MsaT013856.1;Parent=MsaT013856.1
Gene Sequence

>MsaT013856.1

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCAAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCTCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGTGCAAGACGGCCGGGACTCAATTTTGGTGGGCTGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCCATTTTTTCTTGGAAACAATTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAACCCTATGTTGAAACCTCATTGGTTTGGCTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA

Protein sequence

>MsaT013856.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVLELNTQLTQINQLLDIEKKRAEELSHLCKTAGTQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRLVIQGAPTQTFPFFLGNNSSSNMPLHHQPNPPQAQMLPAQFYQNPMLKPHWFGFNNMGGGGGYGPSGFF*