AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG013858


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013858 MtrunA17_Chr8g0355091 86.498 237 32 0 1 237 1 237 2.85e-155 430
MsaG013858 MtrunA17_Chr3g0099421 91.743 218 18 0 1 218 26 243 1.53e-150 419
MsaG013858 MtrunA17_Chr1g0206721 88.991 218 24 0 1 218 1 218 3.92e-147 410
MsaG013858 MtrunA17_Chr2g0292791 88.608 237 27 0 1 237 1 237 6.21e-147 409
MsaG013858 MtrunA17_Chr1g0206701 86.076 237 33 0 1 237 1 237 4.88e-146 407
MsaG013858 MtrunA17_Chr1g0149391 85.232 237 35 0 1 237 1 237 1.32e-139 390
MsaG013858 MtrunA17_Chr1g0206691 79.091 220 46 0 18 237 1 220 1.37e-130 367
MsaG013858 MtrunA17_Chr3g0099411 83.105 219 18 2 1 219 1 200 1.52e-129 364
MsaG013858 MtrunA17_Chr1g0208561 72.766 235 46 3 1 225 1 227 1.04e-119 340
MsaG013858 MtrunA17_Chr3g0089141 71.489 235 49 3 1 225 1 227 2.94e-118 336
MsaG013858 MtrunA17_Chr1g0206991 86.813 182 24 0 1 182 1 182 1.07e-117 333
MsaG013858 MtrunA17_Chr2g0300441 70.042 237 70 1 1 237 1 236 5.75e-117 333
MsaG013858 MtrunA17_Chr2g0317451 66.525 236 79 0 1 236 1 236 6.48e-116 331
MsaG013858 MtrunA17_Chr2g0317481 66.525 236 79 0 1 236 1 236 1.59e-115 330
MsaG013858 MtrunA17_Chr5g0422941 65.401 237 82 0 1 237 1 237 2.69e-115 329
MsaG013858 MtrunA17_Chr2g0325971 71.489 235 49 3 1 225 1 227 4.19e-115 328
MsaG013858 MtrunA17_Chr1g0187361 69.778 225 68 0 1 225 1 225 2.56e-113 324
MsaG013858 MtrunA17_Chr1g0188671 68.889 225 70 0 1 225 39 263 2.75e-113 325
MsaG013858 MtrunA17_Chr1g0208581 69.787 235 53 3 1 225 1 227 2.04e-112 322
MsaG013858 MtrunA17_Chr5g0419601 67.932 237 76 0 1 237 1 237 1.53e-110 317
MsaG013858 MtrunA17_Chr5g0422421 66.667 225 75 0 1 225 1 225 1.45e-106 307
MsaG013858 MtrunA17_Chr7g0238991 66.822 214 70 1 24 237 36 248 7.04e-100 290
MsaG013858 MtrunA17_Chr2g0300421 67.073 164 51 3 1 162 1 163 1.96e-69 211
MsaG013858 MtrunA17_Chr3g0085241 52.910 189 79 1 3 191 35 213 1.49e-66 206
MsaG013858 MtrunA17_Chr3g0089151 74.419 129 33 0 1 129 1 129 8.78e-65 197
MsaG013858 MtrunA17_Chr3g0119901 59.091 154 63 0 7 160 7 160 1.77e-64 199
MsaG013858 MtrunA17_Chr3g0111931 70.588 102 30 0 21 122 2 103 4.00e-47 151
MsaG013858 MtrunA17_Chr2g0333981 39.766 171 93 2 5 172 8 171 3.94e-40 136
MsaG013858 MtrunA17_Chr8g0379021 40.462 173 89 3 5 170 8 173 4.72e-40 135
MsaG013858 MtrunA17_Chr4g0018951 45.161 155 73 3 5 159 8 150 1.29e-34 121
MsaG013858 MtrunA17_Chr1g0187351 83.333 66 11 0 18 83 1 66 2.63e-34 117
MsaG013858 MtrunA17_Chr4g0071601 38.043 184 94 4 5 175 8 184 4.21e-31 113
MsaG013858 MtrunA17_Chr3g0111841 84.746 59 9 0 15 73 2 60 6.18e-30 106
MsaG013858 MtrunA17_Chr1g0175601 46.847 111 56 2 9 118 2 110 1.50e-25 98.6
MsaG013858 MtrunA17_Chr1g0169761 62.319 69 26 0 9 77 2 70 8.08e-25 96.7
MsaG013858 MtrunA17_Chr8g0376821 62.319 69 26 0 9 77 2 70 1.80e-24 95.9
MsaG013858 MtrunA17_Chr3g0111831 70.492 61 18 0 16 76 11 71 2.68e-24 92.4
MsaG013858 MtrunA17_Chr4g0074101 41.379 116 53 3 9 109 2 117 5.57e-24 95.1
MsaG013858 MtrunA17_Chr8g0356071 40.909 132 66 3 9 135 2 126 8.23e-24 93.6
MsaG013858 MtrunA17_Chr1g0180591 48.544 103 51 2 9 109 2 104 1.19e-23 93.6
MsaG013858 MtrunA17_Chr1g0175611 46.535 101 52 1 9 109 2 100 1.39e-23 93.2
MsaG013858 MtrunA17_Chr8g0357771 46.535 101 52 1 9 109 2 100 1.73e-23 93.2
MsaG013858 MtrunA17_Chr4g0052061 40.708 113 64 2 9 120 2 112 7.74e-21 85.9
MsaG013858 MtrunA17_Chr4g0049901 34.545 165 85 3 10 153 29 191 1.48e-19 84.3
MsaG013858 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 3.02e-19 83.2
MsaG013858 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 4.47e-19 83.2
MsaG013858 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 1.39e-18 80.1
MsaG013858 MtrunA17_Chr4g0057151 49.315 73 37 0 10 82 3 75 2.98e-18 80.1
MsaG013858 MtrunA17_Chr8g0345001 33.951 162 94 3 8 163 17 171 3.98e-18 79.3
MsaG013858 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.15e-17 79.0
MsaG013858 MtrunA17_Chr5g0412271 29.858 211 129 6 9 201 2 211 1.22e-17 79.0
MsaG013858 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 1.92e-17 79.0
MsaG013858 MtrunA17_Chr5g0412461 28.638 213 128 6 9 201 2 210 1.96e-17 78.2
MsaG013858 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 2.34e-17 78.6
MsaG013858 MtrunA17_Chr2g0284911 41.346 104 60 1 9 112 17 119 2.50e-17 78.6
MsaG013858 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 2.53e-17 77.4
MsaG013858 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.75e-17 76.3
MsaG013858 MtrunA17_Chr3g0134451 42.308 104 57 3 9 111 2 103 3.19e-17 79.3
MsaG013858 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 9.47e-17 76.6
MsaG013858 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.14e-16 76.6
MsaG013858 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 1.35e-16 75.9
MsaG013858 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.43e-16 75.9
MsaG013858 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 2.36e-16 75.9
MsaG013858 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 4.20e-16 75.1
MsaG013858 MtrunA17_Chr3g0093131 33.813 139 83 4 26 159 36 170 5.99e-16 73.6
MsaG013858 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 9.31e-16 74.3
MsaG013858 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 9.51e-16 73.6
MsaG013858 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.07e-15 73.9
MsaG013858 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.14e-15 73.6
MsaG013858 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.21e-15 73.6
MsaG013858 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.01e-15 69.3
MsaG013858 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 3.18e-15 72.4
MsaG013858 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.35e-15 69.3
MsaG013858 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 4.63e-15 72.0
MsaG013858 MtrunA17_Chr2g0308251 46.575 73 39 0 9 81 2 74 4.76e-15 68.2
MsaG013858 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 6.11e-15 71.2
MsaG013858 MtrunA17_Chr7g0246381 48.485 66 29 1 9 69 2 67 1.05e-14 67.0
MsaG013858 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.27e-14 68.2
MsaG013858 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 1.49e-14 70.9
MsaG013858 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.53e-14 67.4
MsaG013858 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 1.68e-14 66.2
MsaG013858 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 1.78e-14 70.5
MsaG013858 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.22e-14 70.1
MsaG013858 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.01e-14 68.9
MsaG013858 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 3.93e-14 68.6
MsaG013858 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 4.17e-14 68.9
MsaG013858 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.49e-13 67.8
MsaG013858 MtrunA17_Chr4g0060841 28.977 176 103 9 9 172 2 167 1.23e-12 66.2
MsaG013858 MtrunA17_Chr4g0018421 25.258 194 112 6 9 194 2 170 5.58e-12 62.8
MsaG013858 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 1.09e-11 60.5
MsaG013858 MtrunA17_Chr2g0302091 30.061 163 86 6 7 159 36 180 3.63e-11 60.5
MsaG013858 MtrunA17_Chr1g0166611 36.449 107 59 2 20 125 17 115 4.09e-11 58.9
MsaG013858 MtrunA17_Chr4g0025531 41.176 85 50 0 5 89 5 89 4.10e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG013858 AT5G60440.1 54.255 188 79 3 5 189 3 186 4.27e-63 199
MsaG013858 AT2G24840.1 49.693 163 71 4 6 162 60 217 2.58e-45 152
MsaG013858 AT1G01530.1 43.979 191 93 5 4 191 2 181 2.35e-42 144
MsaG013858 AT1G65360.1 40.323 186 104 3 5 189 3 182 2.73e-41 141
MsaG013858 AT4G36590.1 46.341 164 78 3 5 160 3 164 9.95e-39 135
MsaG013858 AT2G34440.1 36.970 165 94 3 9 169 2 160 4.06e-28 105
MsaG013858 AT3G04100.1 32.716 162 105 3 2 159 7 168 1.05e-25 100
MsaG013858 AT3G66656.1 43.697 119 63 1 9 123 2 120 1.13e-25 99.4
MsaG013858 AT1G72350.1 56.164 73 30 1 9 81 43 113 9.02e-22 90.1
MsaG013858 AT1G28460.1 28.571 161 111 2 5 163 4 162 5.95e-20 84.3
MsaG013858 AT4G18960.1 30.833 240 136 8 5 226 15 242 9.83e-20 85.5
MsaG013858 AT4G22950.2 51.316 76 37 0 10 85 3 78 1.06e-19 83.6
MsaG013858 AT4G09960.2 46.512 86 45 1 9 93 2 87 2.36e-19 83.6
MsaG013858 AT4G09960.1 46.512 86 45 1 9 93 2 87 2.89e-19 83.6
MsaG013858 AT4G09960.6 46.512 86 45 1 9 93 3 88 3.10e-19 83.6
MsaG013858 AT4G22950.3 41.818 110 61 1 10 119 3 109 3.34e-19 83.2
MsaG013858 AT4G22950.1 41.818 110 61 1 10 119 3 109 3.34e-19 83.2
MsaG013858 AT4G09960.5 46.512 86 45 1 9 93 12 97 4.33e-19 83.6
MsaG013858 AT4G09960.3 46.512 86 45 1 9 93 28 113 6.19e-19 83.2
MsaG013858 AT2G45660.2 52.941 68 32 0 10 77 3 70 9.16e-19 80.5
MsaG013858 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.21e-18 82.4
MsaG013858 AT4G09960.4 46.512 86 45 1 9 93 97 182 1.97e-18 83.2
MsaG013858 AT2G45660.1 52.941 68 32 0 10 77 3 70 2.86e-18 80.5
MsaG013858 AT2G22540.3 33.663 202 107 8 9 194 2 192 8.46e-18 80.1
MsaG013858 AT2G22540.1 33.663 202 107 8 9 194 2 192 8.46e-18 80.1
MsaG013858 AT1G29962.1 28.743 167 103 4 5 165 4 160 1.33e-17 78.2
MsaG013858 AT4G24540.1 36.486 148 77 5 9 156 2 132 2.08e-17 78.6
MsaG013858 AT2G42830.1 47.368 76 40 0 1 76 9 84 2.86e-17 78.6
MsaG013858 AT2G42830.2 47.368 76 40 0 1 76 9 84 2.89e-17 78.6
MsaG013858 AT5G51870.2 53.731 67 31 0 10 76 3 69 3.42e-17 76.6
MsaG013858 AT3G58780.5 50.704 71 35 0 6 76 20 90 3.87e-17 78.6
MsaG013858 AT3G58780.1 50.704 71 35 0 6 76 14 84 3.92e-17 78.2
MsaG013858 AT3G57230.2 47.059 68 36 0 9 76 2 69 3.96e-17 75.9
MsaG013858 AT3G61120.1 51.471 68 33 0 9 76 2 69 4.08e-17 78.2
MsaG013858 AT5G51870.1 53.731 67 31 0 10 76 3 69 4.44e-17 77.4
MsaG013858 AT5G51870.5 50.000 72 36 0 5 76 21 92 6.55e-17 76.6
MsaG013858 AT3G58780.4 50.704 71 35 0 6 76 14 84 7.46e-17 78.2
MsaG013858 AT5G51870.4 53.731 67 31 0 10 76 3 69 8.93e-17 76.6
MsaG013858 AT5G51870.3 53.731 67 31 0 10 76 13 79 9.65e-17 77.0
MsaG013858 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.14e-16 73.6
MsaG013858 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.16e-16 76.6
MsaG013858 AT5G10140.2 50.725 69 33 1 9 76 2 70 1.27e-16 75.1
MsaG013858 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.31e-16 76.3
MsaG013858 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.33e-16 76.6
MsaG013858 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.42e-16 75.1
MsaG013858 AT1G22130.1 37.143 105 65 1 9 112 2 106 1.46e-16 77.8
MsaG013858 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.66e-16 74.7
MsaG013858 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.66e-16 74.7
MsaG013858 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.66e-16 74.7
MsaG013858 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.81e-16 74.3
MsaG013858 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.81e-16 74.3
MsaG013858 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.81e-16 74.3
MsaG013858 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.81e-16 74.3
MsaG013858 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.81e-16 74.3
MsaG013858 AT5G13790.2 43.011 93 44 1 9 101 2 85 1.87e-16 76.6
MsaG013858 AT4G11880.2 50.000 72 35 1 10 80 3 74 1.95e-16 75.1
MsaG013858 AT4G11880.3 50.000 72 35 1 10 80 3 74 1.95e-16 75.1
MsaG013858 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.99e-16 75.1
MsaG013858 AT1G77980.1 38.095 105 64 1 9 112 2 106 2.05e-16 77.4
MsaG013858 AT3G57230.1 47.059 68 36 0 9 76 2 69 2.12e-16 76.3
MsaG013858 AT3G57230.4 47.059 68 36 0 9 76 2 69 2.12e-16 76.3
MsaG013858 AT5G10140.1 50.725 69 33 1 9 76 2 70 2.18e-16 75.1
MsaG013858 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.29e-16 76.6
MsaG013858 AT5G10140.3 50.725 69 33 1 9 76 2 70 2.45e-16 74.7
MsaG013858 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.56e-16 76.3
MsaG013858 AT4G11880.4 50.000 72 35 1 10 80 3 74 3.78e-16 75.1
MsaG013858 AT4G11880.1 50.000 72 35 1 10 80 3 74 3.78e-16 75.1
MsaG013858 AT1G69120.2 40.659 91 51 1 9 99 2 89 4.71e-16 75.1
MsaG013858 AT1G77950.3 46.053 76 39 2 9 83 2 76 4.77e-16 75.5
MsaG013858 AT1G77950.2 46.053 76 39 2 9 83 2 76 4.77e-16 75.5
MsaG013858 AT1G77950.1 46.053 76 39 2 9 83 2 76 4.77e-16 75.5
MsaG013858 AT1G77950.4 46.053 76 39 2 9 83 2 76 4.77e-16 75.5
MsaG013858 AT1G17310.1 53.165 79 35 1 8 86 47 123 4.85e-16 74.7
MsaG013858 AT5G51860.2 52.239 67 32 0 10 76 3 69 5.11e-16 74.3
MsaG013858 AT1G28450.1 26.857 175 122 3 5 173 4 178 5.25e-16 73.9
MsaG013858 AT5G62165.10 49.254 67 34 0 10 76 3 69 5.97e-16 73.9
MsaG013858 AT5G62165.4 49.254 67 34 0 10 76 3 69 5.97e-16 73.9
MsaG013858 AT2G22630.1 47.059 68 36 0 9 76 2 69 6.15e-16 74.7
MsaG013858 AT2G22630.2 47.059 68 36 0 9 76 2 69 6.15e-16 74.7
MsaG013858 AT1G17310.2 53.165 79 35 1 8 86 58 134 6.25e-16 74.7
MsaG013858 AT5G51860.1 52.239 67 32 0 10 76 3 69 7.07e-16 74.3
MsaG013858 AT5G62165.3 49.254 67 34 0 10 76 3 69 7.17e-16 73.9
MsaG013858 AT5G62165.1 49.254 67 34 0 10 76 3 69 7.17e-16 73.9
MsaG013858 AT5G62165.2 49.254 67 34 0 10 76 3 69 7.17e-16 73.9
MsaG013858 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.97e-16 74.7
MsaG013858 AT3G30260.1 29.091 165 99 4 9 172 2 149 9.55e-16 74.3
MsaG013858 AT1G69120.1 40.659 91 51 1 9 99 2 89 1.07e-15 74.3
MsaG013858 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.18e-15 74.3
MsaG013858 AT5G15800.1 29.167 240 129 9 9 224 2 224 1.21e-15 74.3
MsaG013858 AT3G54340.1 47.143 70 35 1 9 76 2 71 1.53e-15 73.6
MsaG013858 AT2G22540.2 33.168 202 103 9 9 194 2 187 3.38e-15 72.8
MsaG013858 AT5G20240.2 47.143 70 35 1 9 76 2 71 3.99e-15 70.9
MsaG013858 AT5G15800.2 49.275 69 34 1 9 76 2 70 4.67e-15 72.8
MsaG013858 AT2G14210.1 46.377 69 36 1 9 76 2 70 5.24e-15 72.0
MsaG013858 AT5G20240.1 47.143 70 35 1 9 76 2 71 5.77e-15 71.6
MsaG013858 AT2G14210.2 46.377 69 36 1 9 76 2 70 6.98e-15 72.0
MsaG013858 AT5G23260.4 43.299 97 47 3 2 90 9 105 1.17e-14 71.6
MsaG013858 AT5G23260.1 44.681 94 44 3 5 90 12 105 1.33e-14 71.6
MsaG013858 AT3G02310.2 47.826 69 35 1 9 76 2 70 1.56e-14 70.1
MsaG013858 AT3G58780.2 52.459 61 29 0 6 66 14 74 1.75e-14 70.9
MsaG013858 AT5G65050.2 46.377 69 36 1 9 76 2 70 1.82e-14 69.7
MsaG013858 AT5G23260.3 44.318 88 43 2 9 90 2 89 2.18e-14 70.5
MsaG013858 AT5G23260.2 44.318 88 43 2 9 90 2 89 2.25e-14 70.9
MsaG013858 AT3G58780.3 52.459 61 29 0 6 66 14 74 2.33e-14 70.9
MsaG013858 AT5G65050.5 46.377 69 36 1 9 76 2 70 3.01e-14 69.3
MsaG013858 AT5G65050.3 46.377 69 36 1 9 76 2 70 3.28e-14 69.3
MsaG013858 AT1G24260.3 41.237 97 54 1 9 105 2 95 3.38e-14 70.1
MsaG013858 AT5G65050.1 46.377 69 36 1 9 76 2 70 3.59e-14 68.9
MsaG013858 AT2G03710.3 47.143 70 35 2 9 76 2 71 4.02e-14 68.9
MsaG013858 AT3G02310.1 47.826 69 35 1 9 76 2 70 4.42e-14 70.1
MsaG013858 AT1G24260.2 41.237 97 54 1 9 105 2 95 4.43e-14 70.1
MsaG013858 AT1G47760.1 34.483 116 61 3 9 123 2 103 5.22e-14 68.6
MsaG013858 AT5G65060.3 46.377 69 36 1 9 76 2 70 5.63e-14 68.6
MsaG013858 AT5G65060.2 46.377 69 36 1 9 76 2 70 5.66e-14 68.6
MsaG013858 AT5G65060.1 46.377 69 36 1 9 76 2 70 7.16e-14 68.6
MsaG013858 AT1G24260.1 46.377 69 36 1 9 76 2 70 8.62e-14 68.9
MsaG013858 AT2G03710.2 45.714 70 36 1 9 76 2 71 9.74e-14 68.9
MsaG013858 AT2G03710.1 45.714 70 36 1 9 76 2 71 1.01e-13 68.9
MsaG013858 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.44e-13 67.8
MsaG013858 AT5G65070.4 42.029 69 39 1 9 76 2 70 2.82e-13 65.5
MsaG013858 AT5G65070.1 42.029 69 39 1 9 76 2 70 5.67e-13 65.9
MsaG013858 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.06e-12 65.9
MsaG013858 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.09e-12 65.5
MsaG013858 AT2G03060.3 29.379 177 96 9 9 164 2 170 3.08e-12 65.9
MsaG013858 AT2G03060.7 29.379 177 96 9 9 164 2 170 3.08e-12 65.9
MsaG013858 AT2G03060.1 29.379 177 96 9 9 164 2 170 3.08e-12 65.9
MsaG013858 AT1G18750.4 26.733 202 124 7 9 188 2 201 3.19e-12 65.9
MsaG013858 AT1G18750.1 26.733 202 124 7 9 188 2 201 3.49e-12 65.5
MsaG013858 AT2G03060.2 29.379 177 96 9 9 164 2 170 3.50e-12 65.5
MsaG013858 AT5G65070.3 47.368 57 30 0 9 65 2 58 4.67e-12 63.9
MsaG013858 AT1G18750.3 38.961 77 44 2 9 83 2 77 4.73e-12 65.1
MsaG013858 AT1G69540.1 33.636 110 65 3 9 117 2 104 9.85e-12 63.9
MsaG013858 AT1G69540.2 33.636 110 65 3 9 117 2 104 1.18e-11 63.9
MsaG013858 AT4G37435.1 40.278 72 42 1 9 79 2 73 2.23e-11 61.2
MsaG013858 AT1G46408.1 33.613 119 70 4 10 119 5 123 2.25e-11 62.4
MsaG013858 AT5G65080.3 42.667 75 40 2 5 76 3 77 2.84e-11 61.2
MsaG013858 AT2G26320.1 40.000 70 40 1 9 76 18 87 3.48e-11 58.9
MsaG013858 AT5G27130.1 40.000 85 47 2 2 82 6 90 6.43e-11 61.6
MsaG013858 AT5G65080.2 43.548 62 35 0 1 62 1 62 6.94e-11 60.5

Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGGCCGGGACTCAATTT+TGG 0.228205 3:+62322481 MsaT013858.1:CDS
TTGGTTTGGCTTCAACAATA+TGG 0.281947 3:+62322752 MsaT013858.1:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.315191 3:-62322687 None:intergenic
TGGTGGGCTGGTCCCATTGA+TGG 0.319959 3:+62322501 MsaT013858.1:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 3:-62322344 None:intergenic
TTGTCGATCATCATGTTGAT+AGG 0.364843 3:+62322580 MsaT013858.1:CDS
ATGTTGCAACCTCATTGGTT+TGG 0.406166 3:+62322738 MsaT013858.1:CDS
GTCCCATTGATGGGATGAAT+CGG 0.407918 3:+62322511 MsaT013858.1:CDS
AGCCACTTGCGCAAGACGGC+CGG 0.408126 3:+62322468 MsaT013858.1:CDS
ACCCTATGTTGCAACCTCAT+TGG 0.412021 3:+62322733 MsaT013858.1:CDS
TGGTTTGGCTTCAACAATAT+GGG 0.414863 3:+62322753 MsaT013858.1:CDS
TGTTGATAGGCTTGTAATCC+AGG 0.417213 3:+62322593 MsaT013858.1:CDS
GGTGGGCTGGTCCCATTGAT+GGG 0.419749 3:+62322502 MsaT013858.1:CDS
TCTTCTCGATGTCCAGTAGC+TGG 0.437748 3:-62322428 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.442152 3:-62322297 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3:-62322535 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 3:+62322542 MsaT013858.1:CDS
GGCCCGATTCATCCCATCAA+TGG 0.457427 3:-62322514 None:intergenic
GTGGAGGATTTGGTTGATGA+TGG 0.460225 3:-62322677 None:intergenic
TCCCGGCCGTCTTGCGCAAG+TGG 0.479339 3:-62322470 None:intergenic
GCCACTTGCGCAAGACGGCC+GGG 0.492794 3:+62322469 MsaT013858.1:CDS
ATGATGGAGATGCATGTTAG+AGG 0.493894 3:-62322661 None:intergenic
GGGTTCTGATAAAACTGTGC+TGG 0.499287 3:-62322714 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 3:-62322298 None:intergenic
GCCCGATTCATCCCATCAAT+GGG 0.506203 3:-62322513 None:intergenic
ACCAATGAGGTTGCAACATA+GGG 0.507520 3:-62322734 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 3:+62322416 MsaT013858.1:CDS
TCCCATTGATGGGATGAATC+GGG 0.513278 3:+62322512 MsaT013858.1:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.516494 3:-62322536 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3:-62322214 None:intergenic
AACCAATGAGGTTGCAACAT+AGG 0.525962 3:-62322735 None:intergenic
AGTATTGAGCTCGCGCACGT+TGG 0.531885 3:-62322388 None:intergenic
GCTGGAAGCATCTGAGCTTG+TGG 0.533277 3:-62322696 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 3:-62322380 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.535705 3:+62322536 MsaT013858.1:CDS
AGCCCACCAAAATTGAGTCC+CGG 0.536645 3:-62322487 None:intergenic
GGGCTCGGATCAAAAGAATC+CGG 0.538178 3:-62322799 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 3:+62322290 MsaT013858.1:CDS
AACGAAAATACCTTCTCTCC+AGG 0.551818 3:-62322267 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3:+62322178 MsaT013858.1:CDS
GGAGGTGGATATGGACCCTC+CGG 0.560213 3:+62322780 MsaT013858.1:CDS
TCATAGATCGTTATCTATCT+CGG 0.561253 3:+62322313 MsaT013858.1:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3:+62322177 MsaT013858.1:CDS
GCTGAGCCACTTGCGCAAGA+CGG 0.576977 3:+62322464 MsaT013858.1:CDS
GGTTTGGCTTCAACAATATG+GGG 0.578983 3:+62322754 MsaT013858.1:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3:+62322216 MsaT013858.1:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3:-62322229 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 3:+62322091 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.603608 3:+62322087 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 3:-62322191 None:intergenic
AGGATTGAGTAGGAGCACCC+TGG 0.623840 3:-62322611 None:intergenic
GGAAGCATCTGAGCTTGTGG+AGG 0.624119 3:-62322693 None:intergenic
CGGATCCCACCCCAAAACAA+TGG 0.631700 3:+62322333 MsaT013858.1:CDS
GTTGATAGGCTTGTAATCCA+GGG 0.636489 3:+62322594 MsaT013858.1:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3:+62322353 MsaT013858.1:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3:-62322358 None:intergenic
GTTTGGCTTCAACAATATGG+GGG 0.642093 3:+62322755 MsaT013858.1:CDS
TTGTTGAAGCCAAACCAATG+AGG 0.650877 3:-62322747 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655674 3:-62322796 None:intergenic
TTTGGCTTCAACAATATGGG+GGG 0.656547 3:+62322756 MsaT013858.1:CDS
TGACCGTATCAACATTGGGG+TGG 0.665619 3:-62322293 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 3:-62322795 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 3:+62322102 MsaT013858.1:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 3:-62322296 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 3:-62322230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 62322099 62322812 62322099 ID=MsaG013858
Chr3 mRNA 62322099 62322812 62322099 ID=MsaT013858.1;Parent=MsaG013858
Chr3 exon 62322099 62322812 62322099 ID=MsaT013858.1.exon1;Parent=MsaT013858.1
Chr3 CDS 62322099 62322812 62322099 ID=cds.MsaT013858.1;Parent=MsaT013858.1
Gene Sequence

>MsaT013858.1

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGCGCAAGACGGCCGGGACTCAATTTTGGTGGGCTGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTCGATCATCATGTTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAATCCTTTCCATTTTTTCTTGGAAACAATTCATCCTCTAACATGCATCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAACCCTATGTTGCAACCTCATTGGTTTGGCTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA

Protein sequence

>MsaT013858.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSHLRKTAGTQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRLVIQGAPTQSFPFFLGNNSSSNMHLHHQPNPPQAQMLPAQFYQNPMLQPHWFGFNNMGGGGGYGPSGFF*