AlfalfaGEDB | MsaG013879

M. sativa ssp. caerulea / MsaG013879

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010036 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042493 GO:0042594 GO:0044212 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071496 GO:0080029 GO:0080090 GO:0080169 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013879	XP_013459851.1	90.985	477	34	3	1	477	1	468	0.0	858

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013879	sp\|Q9XEC3\|WRK42_ARATH	40.202	495	206	18	34	453	24	503	2.03e-90	288

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013879	tr\|A0A072UWD7\|A0A072UWD7_MEDTR	90.985	477	34	3	1	477	1	468	0.0	858

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013879	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013879	MtrunA17_Chr3g0099641	90.985	477	34	3	1	477	1	468	0.0	858
MsaG013879	MtrunA17_Chr2g0288871	42.827	481	206	12	33	454	60	530	7.55e-96	300
MsaG013879	MtrunA17_Chr2g0322391	40.486	494	204	16	35	455	81	557	1.02e-88	283
MsaG013879	MtrunA17_Chr4g0075201	39.035	456	204	13	35	442	36	465	6.93e-85	270
MsaG013879	MtrunA17_Chr7g0270831	36.726	452	204	12	23	454	13	402	3.58e-70	229
MsaG013879	MtrunA17_Chr4g0025051	35.590	458	206	14	88	461	100	552	2.27e-63	216
MsaG013879	MtrunA17_Chr4g0025061	35.099	453	195	15	94	462	131	568	5.57e-63	215
MsaG013879	MtrunA17_Chr2g0302391	47.210	233	110	6	234	457	185	413	1.47e-57	196
MsaG013879	MtrunA17_Chr4g0024391	33.559	444	209	11	96	456	2	442	1.29e-56	195
MsaG013879	MtrunA17_Chr7g0216891	30.444	450	212	12	101	458	47	487	5.89e-46	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013879	AT4G04450.1	40.202	495	206	18	34	453	24	503	2.07e-91	288
MsaG013879	AT4G04450.2	43.341	413	172	11	88	453	12	409	1.64e-90	283
MsaG013879	AT1G62300.1	40.426	470	221	12	35	456	84	542	6.81e-88	280
MsaG013879	AT4G22070.4	41.626	406	183	11	27	382	19	420	1.30e-74	244
MsaG013879	AT4G22070.3	41.626	406	183	11	27	382	19	420	1.30e-74	244
MsaG013879	AT4G22070.2	41.626	406	183	11	27	382	19	420	1.30e-74	244
MsaG013879	AT4G22070.1	41.626	406	183	11	27	382	19	420	1.30e-74	244
MsaG013879	AT4G01720.1	49.200	250	104	6	222	450	196	443	1.28e-53	187
MsaG013879	AT1G68150.1	40.467	257	123	9	101	356	100	327	3.79e-45	162
MsaG013879	AT5G15130.1	31.197	468	227	15	94	474	35	494	1.59e-44	164

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCTGCATTTGTCAT+TGG	0.377609	3:-62632834	None:intergenic
AACAATAATGGTCCTACTAA+TGG	0.392733	3:+62633191	MsaT013879.1:CDS
AACTGGACAAGCAGTCCCCA+TGG	0.587671	3:-62632228	None:intergenic
AAGAATTCACCCTTGGAACT+TGG	0.434846	3:-62631521	None:intergenic
AAGCAAATAAAGCATTTCAA+GGG	0.619803	3:+62631487	MsaT013879.1:CDS
AATCCAACAATATTAGAAAG+TGG	0.511191	3:+62632861	MsaT013879.1:CDS
AATGTATCACAGATTTCAGA+TGG	0.548456	3:+62632134	MsaT013879.1:intron
AATTCAAATCCAAACAATAA+TGG	0.432073	3:+62633179	MsaT013879.1:CDS
ACCACCAACAGCAAAAGCAA+TGG	0.641019	3:+62632770	MsaT013879.1:CDS
ACTAGAGCTGAAGTGAATTT+CGG	0.413891	3:-62633128	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	62629824	62633247	62629824	ID=MsaG013879
Chr3	mRNA	62629824	62633247	62629824	ID=MsaT013879.1;Parent=MsaG013879
Chr3	exon	62629824	62630021	62629824	ID=MsaT013879.1.exon1;Parent=MsaT013879.1
Chr3	CDS	62629824	62630021	62629824	ID=cds.MsaT013879.1;Parent=MsaT013879.1
Chr3	exon	62630123	62630206	62630123	ID=MsaT013879.1.exon2;Parent=MsaT013879.1
Chr3	CDS	62630123	62630206	62630123	ID=cds.MsaT013879.1;Parent=MsaT013879.1
Chr3	exon	62630879	62631019	62630879	ID=MsaT013879.1.exon3;Parent=MsaT013879.1
Chr3	CDS	62630879	62631019	62630879	ID=cds.MsaT013879.1;Parent=MsaT013879.1
Chr3	exon	62631276	62631626	62631276	ID=MsaT013879.1.exon4;Parent=MsaT013879.1
Chr3	CDS	62631276	62631626	62631276	ID=cds.MsaT013879.1;Parent=MsaT013879.1
Chr3	exon	62632146	62632259	62632146	ID=MsaT013879.1.exon5;Parent=MsaT013879.1
Chr3	CDS	62632146	62632259	62632146	ID=cds.MsaT013879.1;Parent=MsaT013879.1
Chr3	exon	62632702	62633247	62632702	ID=MsaT013879.1.exon6;Parent=MsaT013879.1
Chr3	CDS	62632702	62633247	62632702	ID=cds.MsaT013879.1;Parent=MsaT013879.1

Gene Sequence

>MsaT013879.1

ATGGAAGAAGAAATCATTTGCAATGATGCTATAGGAAATTCTAGTGTTGTTGAAGTTCCACATTCTTCTTCTTCTTCTCAAGTCATGTCTTTTAATGGAAAAAGACTAATTATGGATGAGGTTGATTTCTTTGCAGATAAGAAAATGAGTCCAGTTAATGACCTAACCCTACACCAAATGGAGCATCATCACGTAGATACTAGTTTAGATCTTCTCACCAAGATTTCTCCTAGCAACAAACTGGATGATAGAGAATATTCTGATGCAAGGAACGAAAATGAGTATGCTGCTGTGGTAGCTAAATTGCACCAAACGAATGCTGAAAATCAACGTTTGAGAGAGCTAATTGATAGGCTTAGAATTGATCACAATGCCCTAGAAGAGCATATTATGCAGCTGAAGCATAAACGGAGTAAACTTGAGATTAATGATGAAGCAACTGAAGAAAAGAATGGTATGAATATGATTCCAAGGCCATTCTTGAAATTGGGTTTTGCTAAAGGTGAGCCTTCACAAGAGAGAAAAAACATGGTTGACTTGATGGAATGTGATAAAAAGAGTATTCAAAAGTTTTACAACAATGGAATTATACAAGAGAATACTGAAAAGGAAGAAGATCATCATGAGAATTCACAAGCAAATAAAGCATTTCAAGGGTGGCTTTCAAACCAAGTTCCAAGGGTGAATTCTTTCAAGGGTGTTGATGATCAAGCATCAGAATCAATGATTAAGAAAGCTCGTGTCTCAGTTAGAGCAAGATCAGAAGCTAATATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGGAATCCATGTCCAAGAGCTTATTATCGTTGCACCATGGGGACTGCTTGTCCAGTTCGGAAGCAAGTTCAAAGATGTGCTGAAGATAGAAGTGTTTTGGTAACAACATATGAAGGACAACATAACCATGCTCTACCACCAACAGCAAAAGCAATGGCATCAACAACAACATCAGCAGCATCAATGTTACTTTCAGGACCAATGACAAATGCAGATGGTTTAATAAATCCAACAATATTAGAAAGTGGATCACTCCCTTGTTCACACACCATGGCAACACTCTCAGCTTCAGCTCCATTTCCAACTATCACATTAGATCTCACTGAAGAAGCTATCAATAATTCCTCACAAAAACAACTACAGCAAGGACAGTTCAACCTTCTCCAACCCTTTTTGGCTCAGAAATTTATGTCAGCTCCGAATATTTTTGGAATGGAAAATGCTTCATTTGCTGATACAGTTAGTGCTGCAACAGCTGCTATGACTTCTGATCCGAAATTCACTTCAGCTCTAGTTGCTGCCATAACTTCCATCATTGGAAGTAATTCAAATCCAAACAATAATGGTCCTACTAATGGTACAAGTGGAGACCAGAATTGCAATAAAGCATAG

Protein sequence

>MsaT013879.1

MEEEIICNDAIGNSSVVEVPHSSSSSQVMSFNGKRLIMDEVDFFADKKMSPVNDLTLHQMEHHHVDTSLDLLTKISPSNKLDDREYSDARNENEYAAVVAKLHQTNAENQRLRELIDRLRIDHNALEEHIMQLKHKRSKLEINDEATEEKNGMNMIPRPFLKLGFAKGEPSQERKNMVDLMECDKKSIQKFYNNGIIQENTEKEEDHHENSQANKAFQGWLSNQVPRVNSFKGVDDQASESMIKKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRSVLVTTYEGQHNHALPPTAKAMASTTTSAASMLLSGPMTNADGLINPTILESGSLPCSHTMATLSASAPFPTITLDLTEEAINNSSQKQLQQGQFNLLQPFLAQKFMSAPNIFGMENASFADTVSAATAAMTSDPKFTSALVAAITSIIGSNSNPNNNGPTNGTSGDQNCNKA*