Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG013882 | XP_039687102.1 | 74.910 | 837 | 118 | 7 | 3 | 748 | 52 | 887 | 0.0 | 1187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG013882 | sp|Q9LTS7|C3H65_ARATH | 31.442 | 423 | 219 | 16 | 261 | 648 | 231 | 617 | 8.54e-39 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG013882 | tr|A0A396IRN9|A0A396IRN9_MEDTR | 75.627 | 837 | 112 | 7 | 3 | 748 | 52 | 887 | 0.0 | 1187 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG013882 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG000459 | MsaG013882 | 0.816626 | 8.714555e-52 | 1.755645e-49 |
| MsaG003665 | MsaG013882 | 0.824212 | 1.614757e-53 | 3.975437e-51 |
| MsaG006680 | MsaG013882 | 0.833189 | 1.115289e-55 | 3.540504e-53 |
| MsaG006840 | MsaG013882 | 0.816088 | 1.148606e-51 | 2.282395e-49 |
| MsaG006924 | MsaG013882 | 0.832282 | 1.868230e-55 | 5.775335e-53 |
| MsaG007036 | MsaG013882 | 0.842236 | 5.440035e-58 | 2.279154e-55 |
| MsaG007091 | MsaG013882 | 0.807323 | 9.081955e-50 | 1.454152e-47 |
| MsaG008511 | MsaG013882 | 0.834013 | 6.957629e-56 | 2.262703e-53 |
| MsaG008595 | MsaG013882 | 0.845933 | 5.603878e-59 | 2.648115e-56 |
| MsaG009121 | MsaG013882 | 0.819654 | 1.813762e-52 | 3.952543e-50 |
| MsaG010177 | MsaG013882 | 0.821324 | 7.537589e-53 | 1.716922e-50 |
| MsaG010598 | MsaG013882 | 0.811017 | 1.479996e-50 | 2.590915e-48 |
| MsaG011484 | MsaG013882 | 0.818873 | 2.727333e-52 | 5.822938e-50 |
| MsaG012294 | MsaG013882 | 0.807242 | 9.445010e-50 | 1.509351e-47 |
| MsaG012489 | MsaG013882 | 0.808676 | 4.694835e-50 | 7.765804e-48 |
| MsaG013882 | MsaG014815 | 0.823541 | 2.315825e-53 | 5.598596e-51 |
| MsaG013882 | MsaG014848 | 0.830661 | 4.661581e-55 | 1.374792e-52 |
| MsaG013882 | MsaG016695 | 0.824049 | 1.763128e-53 | 4.321717e-51 |
| MsaG013882 | MsaG016772 | 0.817870 | 4.590763e-52 | 9.549888e-50 |
| MsaG013882 | MsaG017051 | 0.811911 | 9.484625e-51 | 1.697277e-48 |
| MsaG013882 | MsaG017828 | 0.825644 | 7.443070e-54 | 1.905795e-51 |
| MsaG013882 | MsaG017907 | 0.812411 | 7.387618e-51 | 1.338415e-48 |
| MsaG013882 | MsaG018035 | 0.811853 | 9.762794e-51 | 1.744531e-48 |
| MsaG013882 | MsaG018641 | 0.825249 | 9.222052e-54 | 2.335673e-51 |
| MsaG013882 | MsaG018774 | 0.817166 | 6.602985e-52 | 1.348947e-49 |
| MsaG013882 | MsaG020992 | 0.813386 | 4.527840e-51 | 8.405005e-49 |
| MsaG013882 | MsaG021222 | 0.831918 | 2.296234e-55 | 7.024249e-53 |
| MsaG013882 | MsaG021294 | 0.800335 | 2.529081e-48 | 3.445367e-46 |
| MsaG013882 | MsaG023376 | 0.837924 | 7.162991e-57 | 2.620995e-54 |
| MsaG013882 | MsaG023563 | 0.806420 | 1.406920e-49 | 2.205258e-47 |
| MsaG013882 | MsaG023796 | 0.800462 | 2.382689e-48 | 3.255396e-46 |
| MsaG013882 | MsaG024134 | 0.818043 | 4.197374e-52 | 8.770551e-50 |
| MsaG013882 | MsaG026961 | 0.822927 | 3.215354e-53 | 7.645185e-51 |
| MsaG013882 | MsaG027241 | 0.805648 | 2.041288e-49 | 3.141689e-47 |
| MsaG013882 | MsaG029048 | 0.801905 | 1.211388e-48 | 1.710049e-46 |
| MsaG013882 | MsaG029053 | 0.812693 | 6.413121e-51 | 1.170041e-48 |
| MsaG013882 | MsaG029152 | 0.858502 | 1.540607e-62 | 1.132010e-59 |
| MsaG013882 | MsaG030038 | 0.814240 | 2.942344e-51 | 5.580074e-49 |
| MsaG013882 | MsaG030396 | 0.826666 | 4.264891e-54 | 1.123531e-51 |
| MsaG013882 | MsaG030902 | 0.811414 | 1.215049e-50 | 2.147911e-48 |
| MsaG013882 | MsaG031248 | 0.837421 | 9.630419e-57 | 3.470052e-54 |
| MsaG013882 | MsaG032279 | 0.826774 | 4.018347e-54 | 1.061766e-51 |
| MsaG013882 | MsaG034590 | 0.826751 | 4.070171e-54 | 1.074803e-51 |
| MsaG013882 | MsaG038749 | 0.843449 | 2.597588e-58 | 1.131570e-55 |
| MsaG013882 | MsaG039981 | 0.855551 | 1.131973e-61 | 7.460786e-59 |
| MsaG013882 | MsaG040733 | 0.802952 | 7.389041e-49 | 1.068330e-46 |
| MsaG013882 | MsaG043817 | 0.819670 | 1.799292e-52 | 3.922629e-50 |
| MsaG013882 | MsaG045331 | 0.800383 | 2.472435e-48 | 3.371967e-46 |
| MsaG013882 | MsaG045510 | 0.805631 | 2.057338e-49 | 3.165224e-47 |
| MsaG013882 | MsaG046540 | 0.813179 | 5.025769e-51 | 9.281054e-49 |
| MsaG013882 | MsaG046780 | 0.813704 | 3.857920e-51 | 7.218609e-49 |
| MsaG013882 | MsaG047077 | 0.821011 | 8.894016e-53 | 2.009247e-50 |
| MsaG013882 | MsaG047097 | 0.816328 | 1.015721e-51 | 2.030779e-49 |
| MsaG013882 | MsaG001072 | 0.816733 | 8.250528e-52 | 1.666756e-49 |
| MsaG013882 | MsaG002617 | 0.838051 | 6.646465e-57 | 2.441474e-54 |
| MsaG013882 | MsaG020128 | 0.800393 | 2.460687e-48 | 3.356705e-46 |
| MsaG013882 | MsaG022288 | 0.820161 | 1.390540e-52 | 3.071513e-50 |
| MsaG013882 | MsaG018939 | 0.800979 | 1.871345e-48 | 2.586668e-46 |
| MsaG013882 | MsaG033778 | 0.801244 | 1.653025e-48 | 2.298568e-46 |
| MsaG013882 | MsaG033449 | 0.843540 | 2.456185e-58 | 1.073134e-55 |
| MsaG013882 | MsaG033259 | 0.824809 | 1.170369e-53 | 2.928707e-51 |
| MsaG013882 | MsaG036736 | 0.813174 | 5.038301e-51 | 9.302988e-49 |
| MsaG013882 | MsaG037155 | 0.863704 | 4.093730e-64 | 3.673515e-61 |
| MsaG013882 | MsaG038591 | 0.802331 | 9.909819e-49 | 1.412608e-46 |
| MsaG013882 | MsaG039797 | 0.810245 | 2.170202e-50 | 3.728269e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG013882 | MtrunA17_Chr3g0099651 | 75.627 | 837 | 112 | 7 | 3 | 748 | 52 | 887 | 0.0 | 1187 |
| MsaG013882 | MtrunA17_Chr5g0446991 | 76.730 | 838 | 100 | 9 | 3 | 748 | 43 | 877 | 0.0 | 1182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG013882 | AT5G56930.1 | 31.442 | 423 | 219 | 16 | 261 | 648 | 231 | 617 | 8.68e-40 | 157 |
Find 157 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCATCTAATCTCTTTA+TGG | 0.121630 | 3:+62697679 | MsaT013882.1:CDS |
| TTAGAAGAGGGAGAAATTTC+TGG | 0.169773 | 3:+62697509 | MsaT013882.1:CDS |
| ATTACTGGATTCTACAATTA+TGG | 0.218748 | 3:+62697388 | MsaT013882.1:CDS |
| GGCATCTTCCTTTCATATAA+TGG | 0.222610 | 3:-62711098 | None:intergenic |
| TTCAGTTTCACTGCTGAATA+AGG | 0.267921 | 3:+62714443 | MsaT013882.1:intron |
| ATTCTGTTTCTCGCAGATTC+GGG | 0.283767 | 3:-62696975 | None:intergenic |
| GGAGCCTTTAGACACAAAAT+TGG | 0.296113 | 3:-62713598 | None:intergenic |
| TCTTCAGAAGGTCTGGTATC+TGG | 0.304297 | 3:+62714726 | MsaT013882.1:CDS |
| TATTCTGTTTCTCGCAGATT+CGG | 0.308123 | 3:-62696976 | None:intergenic |
| ATTTATAAATCTAATTCCTT+TGG | 0.310961 | 3:-62714155 | None:intergenic |
| AGAATAAATTCTCTTAGAAT+TGG | 0.311344 | 3:-62714074 | None:intergenic |
| TGTATTTCCTTCAAGGGTAT+TGG | 0.313994 | 3:-62696741 | None:intergenic |
| ACAGAGAGCTAGGTGTTAAA+AGG | 0.319685 | 3:+62711028 | MsaT013882.1:CDS |
| AAACCATCTGTTTGTGTAGA+TGG | 0.328437 | 3:-62696870 | None:intergenic |
| CGGTAGTGAAGTTGATTTGA+TGG | 0.337687 | 3:+62697000 | MsaT013882.1:CDS |
| GACAGAAGATGGTGAATTAC+TGG | 0.340012 | 3:+62697373 | MsaT013882.1:CDS |
| TGATGCAGCAGAATTTCTTA+TGG | 0.341614 | 3:+62696836 | MsaT013882.1:CDS |
| TTTACCATAAAGAGATTAGA+TGG | 0.345594 | 3:-62697683 | None:intergenic |
| TGGACAAGATTTCCCTTGTT+TGG | 0.347517 | 3:-62714223 | None:intergenic |
| TTTATAAATCTAATTCCTTT+GGG | 0.352802 | 3:-62714154 | None:intergenic |
| GGTTGTACCGTGTCTTGTTT+TGG | 0.353400 | 3:-62714202 | None:intergenic |
| CTTCAAGGGTATTGGACCCT+TGG | 0.362987 | 3:-62696733 | None:intergenic |
| TCATTTGGAACAGATGATAA+TGG | 0.364717 | 3:+62696893 | MsaT013882.1:CDS |
| ATCGGTTCAAGAGGTAAATA+AGG | 0.366054 | 3:+62714632 | MsaT013882.1:CDS |
| TTCAAGGGTATTGGACCCTT+GGG | 0.374920 | 3:-62696732 | None:intergenic |
| AAGGAGATACCCGTATTAAA+AGG | 0.376901 | 3:-62697650 | None:intergenic |
| GGAGTCAACTTTCTTTCTTT+CGG | 0.379336 | 3:+62714319 | MsaT013882.1:CDS |
| ATTTCACCCTCTTGAATAGT+AGG | 0.380109 | 3:-62697263 | None:intergenic |
| TCTGGTTTGCAAGCATTTGT+AGG | 0.381821 | 3:-62713974 | None:intergenic |
| CTGCTGAATAAGGATGATAA+TGG | 0.386959 | 3:+62714453 | MsaT013882.1:CDS |
| ATTCCTTTGGGTGCTGAGGC+AGG | 0.392459 | 3:-62714142 | None:intergenic |
| AGTTGAAGCCTGAAAATTAT+CGG | 0.396775 | 3:-62714658 | None:intergenic |
| CGGGAGTTCATTTGCAAACA+TGG | 0.405968 | 3:+62697622 | MsaT013882.1:CDS |
| TTTCAAGATAATTGCAATGT+TGG | 0.406632 | 3:+62696639 | MsaT013882.1:intron |
| AATACGGGTATCTCCTTTCA+AGG | 0.410281 | 3:+62697656 | MsaT013882.1:CDS |
| GCGCACCTCACTTACACTTT+CGG | 0.410928 | 3:-62697069 | None:intergenic |
| AGTCTTGCACAAAGGATTCA+TGG | 0.412264 | 3:+62697742 | MsaT013882.1:CDS |
| CTTGTCTCCAACACTTTCAA+TGG | 0.412681 | 3:-62696778 | None:intergenic |
| TCCTTCTTCAATCAGAATAT+CGG | 0.414405 | 3:-62697483 | None:intergenic |
| GACATCATGTATTTCCTTCA+AGG | 0.416233 | 3:-62696748 | None:intergenic |
| GATAATTGCAATGTTGGAAT+GGG | 0.423461 | 3:+62696645 | MsaT013882.1:intron |
| ACAACAAAAGGAAACAGAAT+TGG | 0.424477 | 3:+62697208 | MsaT013882.1:CDS |
| ACTCCCTTGGGCATGACAGC+TGG | 0.427412 | 3:-62714301 | None:intergenic |
| ACATCTGTCTTCAGAAGGTC+TGG | 0.430319 | 3:+62714719 | MsaT013882.1:CDS |
| CTCGTCACTCTTGTATGAAA+GGG | 0.433762 | 3:+62713532 | MsaT013882.1:CDS |
| TCCGATATTCTGATTGAAGA+AGG | 0.436958 | 3:+62697482 | MsaT013882.1:CDS |
| GAAAGAGGAGACTTCAACTC+TGG | 0.441262 | 3:-62713992 | None:intergenic |
| TTATGGATCAAACTGATGAT+AGG | 0.443642 | 3:+62696536 | None:intergenic |
| AACTTTCTTTCTTTCGGCAA+AGG | 0.445900 | 3:+62714325 | MsaT013882.1:CDS |
| GATGCAGCAGAATTTCTTAT+GGG | 0.447634 | 3:+62696837 | MsaT013882.1:CDS |
| GGAAGAACAGAGTGGTCATA+AGG | 0.447947 | 3:+62697292 | MsaT013882.1:CDS |
| AGCATCAAACTTGGGCCAAA+GGG | 0.449609 | 3:+62714761 | MsaT013882.1:CDS |
| CAAGGGTCCAATACCCTTGA+AGG | 0.451166 | 3:+62696734 | MsaT013882.1:CDS |
| GAAGAAGGAGATTTAGAAGA+GGG | 0.451883 | 3:+62697497 | MsaT013882.1:CDS |
| AAACAATGAAAGACAACAAA+AGG | 0.454560 | 3:+62697196 | MsaT013882.1:CDS |
| TGTGAGAATAGCGCAGTTTG+TGG | 0.460073 | 3:-62714507 | None:intergenic |
| CAACACTTTCAATGGTCTCA+TGG | 0.464908 | 3:-62696770 | None:intergenic |
| TTGGAGAGCTGGTGATCGTA+TGG | 0.470311 | 3:-62713564 | None:intergenic |
| TCATAAACAAGCATCAAACT+TGG | 0.472217 | 3:+62714752 | MsaT013882.1:CDS |
| GAAATTCTGCTGCATCATCT+AGG | 0.474076 | 3:-62696830 | None:intergenic |
| AGAAAGAAAGTTGACTCCCT+TGG | 0.474127 | 3:-62714314 | None:intergenic |
| AGATAATTGCAATGTTGGAA+TGG | 0.478875 | 3:+62696644 | MsaT013882.1:intron |
| CATGTTTGCAAATGAACTCC+CGG | 0.480235 | 3:-62697621 | None:intergenic |
| AGTGGAACATGTGCAGATAA+AGG | 0.481118 | 3:+62714247 | MsaT013882.1:CDS |
| TCAGTCGTTCTGCCATGGAT+TGG | 0.481190 | 3:-62714548 | None:intergenic |
| TTGTAGGCGTAGGTATATCT+TGG | 0.482397 | 3:-62713958 | None:intergenic |
| GAAAGAAAGTTGACTCCCTT+GGG | 0.483104 | 3:-62714313 | None:intergenic |
| TTTGTATTTCCACACGAAAG+AGG | 0.485412 | 3:-62714007 | None:intergenic |
| GTTTCACATCTGTCTTCAGA+AGG | 0.486768 | 3:+62714714 | MsaT013882.1:CDS |
| AGGCGTAGGTATATCTTGGC+TGG | 0.488376 | 3:-62713954 | None:intergenic |
| TCACACCAATGTAGAACATA+AGG | 0.494563 | 3:+62714096 | MsaT013882.1:CDS |
| AAAATTGGAACAAGGATACT+TGG | 0.494838 | 3:-62713583 | None:intergenic |
| GGATCACAGCCATTGTAAAT+CGG | 0.496225 | 3:+62714614 | MsaT013882.1:CDS |
| TGACGAGCAGTAGCGTATCC+AGG | 0.500313 | 3:-62713516 | None:intergenic |
| AAGTCGAATTGAGTGCCCTT+TGG | 0.505547 | 3:-62714776 | None:intergenic |
| TGATTTCAGTCGTTCTGCCA+TGG | 0.505856 | 3:-62714553 | None:intergenic |
| ACTTTCAACTCAGAGTTCTC+AGG | 0.506021 | 3:-62696690 | None:intergenic |
| AGTTCCGTGATCTTTGATAG+AGG | 0.509597 | 3:-62697771 | None:intergenic |
| AACAAGGATACTTGGAGAGC+TGG | 0.522750 | 3:-62713575 | None:intergenic |
| TGGAATGGGGCAAGAAAACC+AGG | 0.525766 | 3:+62696659 | MsaT013882.1:CDS |
| AGTTTGTCCCTTTGTTGACT+CGG | 0.528472 | 3:-62697141 | None:intergenic |
| CATTGAAAGTGTTGGAGACA+AGG | 0.530051 | 3:+62696779 | MsaT013882.1:CDS |
| AATACCATGGACTTGGTTGA+AGG | 0.530463 | 3:-62712330 | None:intergenic |
| GCTCGTCACTCTTGTATGAA+AGG | 0.531312 | 3:+62713531 | MsaT013882.1:CDS |
| ACAGATGATAATGGACGAGT+TGG | 0.532127 | 3:+62696902 | MsaT013882.1:CDS |
| AAGCATCAAACTTGGGCCAA+AGG | 0.532540 | 3:+62714760 | MsaT013882.1:CDS |
| GCAGAAAAGAACAGAGAGCT+AGG | 0.533078 | 3:+62711018 | MsaT013882.1:CDS |
| TATGAAAGGAAGATGCCATA+AGG | 0.535457 | 3:+62711104 | MsaT013882.1:CDS |
| GGGGCAAGAAAACCAGGAAA+AGG | 0.535773 | 3:+62696665 | MsaT013882.1:CDS |
| GAAGACAGATGTGAAACAAA+GGG | 0.540909 | 3:-62714708 | None:intergenic |
| TGCTGATGTCAAGGATCCCA+AGG | 0.542510 | 3:+62696716 | MsaT013882.1:CDS |
| GAGAACTCTGAGTTGAAAGT+TGG | 0.544375 | 3:+62696693 | MsaT013882.1:CDS |
| TGAAGAAGGAGATTTAGAAG+AGG | 0.545846 | 3:+62697496 | MsaT013882.1:CDS |
| GGATTTGAGTGCCAATGCTA+TGG | 0.554777 | 3:+62696806 | MsaT013882.1:CDS |
| AGTACACCACTGAATAATCA+TGG | 0.555772 | 3:+62714034 | MsaT013882.1:CDS |
| ACATCATGTATTTCCTTCAA+GGG | 0.556388 | 3:-62696747 | None:intergenic |
| CCTCTTGAACCGATTTACAA+TGG | 0.556834 | 3:-62714623 | None:intergenic |
| TCTAATTCCTTTGGGTGCTG+AGG | 0.558849 | 3:-62714146 | None:intergenic |
| GACTGTTGATGCCAGCAGAA+AGG | 0.560332 | 3:+62703044 | MsaT013882.1:intron |
| AAAGACCAATACCATGGACT+TGG | 0.563383 | 3:-62712337 | None:intergenic |
| GAATGTCGCCATTATATGAA+AGG | 0.564812 | 3:+62711090 | MsaT013882.1:CDS |
| ACAAGTATCACCTCTACGAC+AGG | 0.565747 | 3:-62713619 | None:intergenic |
| AACACTGGTTTGTCCTCTAG+CGG | 0.566094 | 3:+62697232 | MsaT013882.1:CDS |
| GGAAACAGAATTGGTAACAC+TGG | 0.567719 | 3:+62697217 | MsaT013882.1:CDS |
| GCTAGGTGTTAAAAGGCAAA+AGG | 0.570887 | 3:+62711035 | MsaT013882.1:CDS |
| TTGCAAGCATTTGTAGGCGT+AGG | 0.572990 | 3:-62713968 | None:intergenic |
| ACTAGCAAGAAGCGTAGCTG+AGG | 0.573123 | 3:-62714685 | None:intergenic |
| TTCTGTTTCTCGCAGATTCG+GGG | 0.575285 | 3:-62696974 | None:intergenic |
| ATCTCTTCCTACTATTCAAG+AGG | 0.577525 | 3:+62697256 | MsaT013882.1:CDS |
| CATGTGTCCGAGTCAACAAA+GGG | 0.577612 | 3:+62697134 | MsaT013882.1:CDS |
| ATCATCTAGGACCATAGCAT+TGG | 0.578913 | 3:-62696817 | None:intergenic |
| TAAGGTGACAGACGTTTCAC+AGG | 0.580331 | 3:+62714114 | MsaT013882.1:CDS |
| TTGAAGTCTCCTCTTTCGTG+TGG | 0.584487 | 3:+62713998 | MsaT013882.1:CDS |
| TGAAGACAGATGTGAAACAA+AGG | 0.585226 | 3:-62714709 | None:intergenic |
| CATGAGACCATTGAAAGTGT+TGG | 0.585803 | 3:+62696771 | MsaT013882.1:CDS |
| AGACACGGTACAACCAAACA+AGG | 0.587232 | 3:+62714210 | MsaT013882.1:CDS |
| TATTCCAGCTGTCATGCCCA+AGG | 0.588364 | 3:+62714297 | MsaT013882.1:CDS |
| TATTCCTTCAACCAAGTCCA+TGG | 0.595268 | 3:+62712326 | MsaT013882.1:CDS |
| TGTCACCTTATGTTCTACAT+TGG | 0.595277 | 3:-62714101 | None:intergenic |
| ACACTGGTTTGTCCTCTAGC+GGG | 0.597450 | 3:+62697233 | MsaT013882.1:CDS |
| GCATTGAATATGACAGAAGA+TGG | 0.598965 | 3:+62697362 | MsaT013882.1:CDS |
| ATTAGATGGAAAGCCTTGAA+AGG | 0.601531 | 3:-62697669 | None:intergenic |
| CCATTGTAAATCGGTTCAAG+AGG | 0.603158 | 3:+62714623 | MsaT013882.1:CDS |
| ATGTTTGCAAATGAACTCCC+GGG | 0.603534 | 3:-62697620 | None:intergenic |
| TTGGATGAGATTGAGAAACC+CGG | 0.603712 | 3:+62697602 | MsaT013882.1:CDS |
| TCAAGAGGGTGAAATTGAGA+AGG | 0.606957 | 3:+62697271 | MsaT013882.1:CDS |
| ATTGAAAGTGTTGGAGACAA+GGG | 0.607556 | 3:+62696780 | MsaT013882.1:CDS |
| TCATGTGTCCGAGTCAACAA+AGG | 0.608096 | 3:+62697133 | MsaT013882.1:CDS |
| TGGAGAGCTGGTGATCGTAT+GGG | 0.608470 | 3:-62713563 | None:intergenic |
| TGGATGAGATTGAGAAACCC+GGG | 0.616226 | 3:+62697603 | MsaT013882.1:CDS |
| GAAACCTCTATCAAAGATCA+CGG | 0.616776 | 3:+62697767 | MsaT013882.1:CDS |
| TTCAGCTGATGATTCTGTGA+GGG | 0.619873 | 3:+62714593 | MsaT013882.1:CDS |
| GAAAGTTGGTGCTGATGTCA+AGG | 0.620891 | 3:+62696707 | MsaT013882.1:CDS |
| CATAAACAAGCATCAAACTT+GGG | 0.621195 | 3:+62714753 | MsaT013882.1:CDS |
| CACATTTGATGTGTCTTCTG+CGG | 0.633235 | 3:+62697553 | MsaT013882.1:CDS |
| GTAGGAAGAGATCCCGCTAG+AGG | 0.633801 | 3:-62697245 | None:intergenic |
| GAACCATCTACACAAACAGA+TGG | 0.637190 | 3:+62696867 | MsaT013882.1:CDS |
| TCTAAAGGCTCCTGTCGTAG+AGG | 0.640373 | 3:+62713609 | MsaT013882.1:CDS |
| ATTCCAGCTGTCATGCCCAA+GGG | 0.640386 | 3:+62714298 | MsaT013882.1:CDS |
| TCGTCACTCTTGTATGAAAG+GGG | 0.643407 | 3:+62713533 | MsaT013882.1:CDS |
| AAGTGTTGGAGACAAGGGCA+AGG | 0.644118 | 3:+62696785 | MsaT013882.1:CDS |
| AAGCCTGCCTCAGCACCCAA+AGG | 0.649238 | 3:+62714139 | MsaT013882.1:CDS |
| TGGATGCCATGATTATTCAG+TGG | 0.655077 | 3:-62714040 | None:intergenic |
| ATAATTGCAATGTTGGAATG+GGG | 0.664245 | 3:+62696646 | MsaT013882.1:CDS |
| GATGTTCAACATATTCTACT+CGG | 0.666367 | 3:-62697027 | None:intergenic |
| TTAGACACAAAATTGGAACA+AGG | 0.673175 | 3:-62713591 | None:intergenic |
| GCTGATGTCAAGGATCCCAA+GGG | 0.678207 | 3:+62696717 | MsaT013882.1:CDS |
| GCCAGCAGAAAGGAACAAAG+TGG | 0.681605 | 3:+62703054 | MsaT013882.1:intron |
| TCTCTTCCTACTATTCAAGA+GGG | 0.684623 | 3:+62697257 | MsaT013882.1:CDS |
| TAGTACACCAAAACAAGACA+CGG | 0.696951 | 3:+62714195 | MsaT013882.1:CDS |
| ATTCAGCTGATGATTCTGTG+AGG | 0.697116 | 3:+62714592 | MsaT013882.1:CDS |
| GACACGGTACAACCAAACAA+GGG | 0.697668 | 3:+62714211 | MsaT013882.1:CDS |
| AGATAAAGGTCAAAATACTG+CGG | 0.725271 | 3:+62714261 | MsaT013882.1:CDS |
| ATTGAGAAGGAAGAACAGAG+TGG | 0.726299 | 3:+62697284 | MsaT013882.1:CDS |
| TATCTGCACATGTTCCACTG+TGG | 0.736675 | 3:-62714243 | None:intergenic |
| AAGGGAAATCTTGTCCACAG+TGG | 0.738177 | 3:+62714229 | MsaT013882.1:CDS |
| ATCTGCGAGAAACAGAATAG+CGG | 0.743599 | 3:+62696980 | MsaT013882.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 62696551 | 62714842 | 62696551 | ID=MsaG013882 |
| Chr3 | mRNA | 62696551 | 62714842 | 62696551 | ID=MsaT013882.1;Parent=MsaG013882 |
| Chr3 | exon | 62696551 | 62696557 | 62696551 | ID=MsaT013882.1.exon1;Parent=MsaT013882.1 |
| Chr3 | CDS | 62696551 | 62696557 | 62696551 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62696646 | 62696932 | 62696646 | ID=MsaT013882.1.exon2;Parent=MsaT013882.1 |
| Chr3 | CDS | 62696646 | 62696932 | 62696646 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62696968 | 62697076 | 62696968 | ID=MsaT013882.1.exon3;Parent=MsaT013882.1 |
| Chr3 | CDS | 62696968 | 62697076 | 62696968 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62697129 | 62697804 | 62697129 | ID=MsaT013882.1.exon4;Parent=MsaT013882.1 |
| Chr3 | CDS | 62697129 | 62697804 | 62697129 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62703059 | 62703107 | 62703059 | ID=MsaT013882.1.exon5;Parent=MsaT013882.1 |
| Chr3 | CDS | 62703059 | 62703107 | 62703059 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62710997 | 62711125 | 62710997 | ID=MsaT013882.1.exon6;Parent=MsaT013882.1 |
| Chr3 | CDS | 62710997 | 62711125 | 62710997 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62712297 | 62712347 | 62712297 | ID=MsaT013882.1.exon7;Parent=MsaT013882.1 |
| Chr3 | CDS | 62712297 | 62712347 | 62712297 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62713513 | 62713656 | 62713513 | ID=MsaT013882.1.exon8;Parent=MsaT013882.1 |
| Chr3 | CDS | 62713513 | 62713656 | 62713513 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62713947 | 62714346 | 62713947 | ID=MsaT013882.1.exon9;Parent=MsaT013882.1 |
| Chr3 | CDS | 62713947 | 62714346 | 62713947 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Chr3 | exon | 62714448 | 62714842 | 62714448 | ID=MsaT013882.1.exon10;Parent=MsaT013882.1 |
| Chr3 | CDS | 62714448 | 62714842 | 62714448 | ID=cds.MsaT013882.1;Parent=MsaT013882.1 |
| Gene Sequence |
| Protein sequence |
