AlfalfaGEDB | MsaG014039

M. sativa ssp. caerulea / MsaG014039

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014039	XP_003600252.3	94.949	297	13	1	1	295	1	297	0.0	589

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014039	sp\|Q6ICW6\|WNK11_ARATH	77.660	282	61	1	6	285	11	292	3.41e-169	474

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014039	tr\|A0A396INP8\|A0A396INP8_MEDTR	94.949	297	13	1	1	295	1	297	0.0	589

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000009	MsaG014039	0.809698	2.841410e-50	4.817081e-48
MsaG000010	MsaG014039	0.827892	2.175195e-54	5.930455e-52
MsaG000062	MsaG014039	0.808247	5.790412e-50	9.479407e-48
MsaG000083	MsaG014039	0.808445	5.257043e-50	8.647118e-48
MsaG000113	MsaG014039	0.805574	2.114420e-49	3.248579e-47
MsaG000127	MsaG014039	0.830904	4.067533e-55	1.208037e-52
MsaG000138	MsaG014039	0.875520	5.992564e-68	8.818814e-65
MsaG000140	MsaG014039	0.849350	6.495813e-60	3.443616e-57
MsaG000153	MsaG014039	0.814947	2.055225e-51	3.967634e-49
MsaG000167	MsaG014039	0.853672	3.939752e-61	2.427215e-58

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014039	MtrunA17_Chr3g0101091	94.949	297	13	1	1	295	1	297	0.0	589
MsaG014039	MtrunA17_Chr3g0101081	94.949	297	13	1	1	295	1	297	0.0	589
MsaG014039	MtrunA17_Chr3g0101111	94.932	296	13	1	1	294	1	296	0.0	587
MsaG014039	MtrunA17_Chr7g0225201	88.514	296	32	1	1	294	2	297	0.0	548
MsaG014039	MtrunA17_Chr3g0132681	86.441	295	37	2	1	292	1	295	0.0	527
MsaG014039	MtrunA17_Chr5g0445271	82.042	284	49	1	1	282	2	285	1.99e-179	496
MsaG014039	MtrunA17_Chr5g0447731	74.823	282	69	1	10	289	7	288	7.55e-165	459
MsaG014039	MtrunA17_Chr7g0273851	60.424	283	107	3	10	288	8	289	4.47e-119	358
MsaG014039	MtrunA17_Chr1g0205471	61.702	282	101	5	11	288	10	288	1.25e-116	351
MsaG014039	MtrunA17_Chr1g0190951	60.071	283	108	3	10	288	8	289	4.26e-116	350

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014039	AT5G55560.1	77.660	282	61	1	6	285	11	292	3.47e-170	474
MsaG014039	AT3G48260.1	63.469	271	97	1	14	282	10	280	7.30e-123	361
MsaG014039	AT3G04910.1	61.131	283	105	3	10	288	8	289	1.39e-117	353
MsaG014039	AT5G28080.2	58.545	275	111	2	10	282	9	282	3.56e-115	341
MsaG014039	AT3G22420.1	57.246	276	115	2	11	284	9	283	2.17e-114	341
MsaG014039	AT3G22420.5	56.786	280	118	2	11	288	9	287	4.50e-114	341
MsaG014039	AT3G22420.4	56.786	280	118	2	11	288	80	358	1.33e-113	342
MsaG014039	AT3G22420.3	56.786	280	118	2	11	288	80	358	2.58e-113	342
MsaG014039	AT3G51630.1	60.073	273	107	1	12	282	11	283	3.65e-113	337
MsaG014039	AT3G51630.2	60.073	273	107	1	12	282	11	283	3.65e-113	337

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Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTCTCGCTCAACCA+AGG	0.579858	3:-65891913	MsaT014039.1:CDS
AAAGCATTTGATAATGAAGA+AGG	0.507018	3:-65892667	MsaT014039.1:CDS
AAAGTCTTTCAATCATTCCA+GGG	0.617274	3:+65892596	None:intergenic
AAAGTGTCTCGCTCAACCAA+GGG	0.644670	3:-65891912	MsaT014039.1:CDS
AAATGTTTCTGAGTCTTTGT+CGG	0.423160	3:+65892765	None:intergenic
AAGAAGGAATAGAAGTAGCA+TGG	0.500540	3:-65892651	MsaT014039.1:CDS
AAGGGCTAGACCTTCTGCTG+AGG	0.666215	3:-65891894	MsaT014039.1:CDS
ACATAAGCATGTTTCTATTA+AGG	0.226294	3:-65892431	MsaT014039.1:CDS
ACATTGTCACATTCACTATA+TGG	0.341582	3:+65892022	None:intergenic
ACTGATCCAACCGGAAGATA+TGG	0.362153	3:-65892736	MsaT014039.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	65891829	65892812	65891829	ID=MsaG014039
Chr3	mRNA	65891829	65892812	65891829	ID=MsaT014039.1;Parent=MsaG014039
Chr3	exon	65891829	65892212	65891829	ID=MsaT014039.1.exon2;Parent=MsaT014039.1
Chr3	CDS	65891829	65892212	65891829	ID=cds.MsaT014039.1;Parent=MsaT014039.1
Chr3	exon	65892309	65892812	65892309	ID=MsaT014039.1.exon1;Parent=MsaT014039.1
Chr3	CDS	65892309	65892812	65892309	ID=cds.MsaT014039.1;Parent=MsaT014039.1

Gene Sequence

>MsaT014039.1

ATGCCAAGTGTTCAACAAAATCCATCCGACAAAGACTCAGAAACATTTGTTGAAACTGATCCAACCGGAAGATATGGAAGATACGATGAATTACTTGGAGCTGGTGCTTGTAAAAAAGTCTATAAAGCATTTGATAATGAAGAAGGAATAGAAGTAGCATGGAATCAAGTTAAGCTCAGAAATTTCAGCAATGACCCTGGAATGATTGAAAGACTTTACTCTGAAGTGAGACTGCTTAGAAACATGACAAACAAAATCATCATTGCACTTTACAGTGTTTGGAGGGATAAGGATCATAACACACTGAATTTCATCACCGAGGTTTGTACAAGTGGGAATTTGAGGGAGTATAGGAAGAAACATAAGCATGTTTCTATTAAGGCTTTGAAGAAGTGGTCTAAGAAAATTTTGGAAGGGTTGAATTATTTACATGTGCATGATCCTTGTATCATTCATAGAGACCTCAACTGCAGTAATGTTTTTGTGAATGGAAATACTGGCCAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGTGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAAACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGCTAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTCTTTGATGATGTAGAGTACGATGAAAACGACGATGTTGATTACTAA

Protein sequence

>MsaT014039.1

MPSVQQNPSDKDSETFVETDPTGRYGRYDELLGAGACKKVYKAFDNEEGIEVAWNQVKLRNFSNDPGMIERLYSEVRLLRNMTNKIIIALYSVWRDKDHNTLNFITEVCTSGNLREYRKKHKHVSIKALKKWSKKILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYSFGMLVLEMVTLVIPYSECDNVAKIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRARPSAEELLKDPFFDDVEYDENDDVDY*