AlfalfaGEDB | MsaG014043

M. sativa ssp. caerulea / MsaG014043

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014043	PNX84082.1	83.562	73	11	1	14	86	25	96	7.17e-35	127

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014043	sp\|Q6ICW6\|WNK11_ARATH	71.233	73	20	1	14	86	30	101	5.07e-29	108

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014043	tr\|A0A2K3M004\|A0A2K3M004_TRIPR	83.562	73	11	1	14	86	25	96	3.42e-35	127

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG014043	0.868572	1.195359e-65	1.305443e-62
MsaG000048	MsaG014043	0.804256	3.975328e-49	5.923913e-47
MsaG000202	MsaG014043	0.806576	1.304651e-49	2.052489e-47
MsaG000234	MsaG014043	0.840903	1.216513e-57	4.885575e-55
MsaG000379	MsaG014043	0.856785	4.942956e-62	3.407653e-59
MsaG000413	MsaG014043	0.873020	4.175714e-67	5.505784e-64
MsaG000472	MsaG014043	0.835712	2.611540e-56	8.935813e-54
MsaG000520	MsaG014043	0.815141	1.862735e-51	3.613555e-49
MsaG000545	MsaG014043	0.800492	2.349515e-48	3.212173e-46
MsaG000621	MsaG014043	0.831037	3.774058e-55	1.125164e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014043	MtrunA17_Chr7g0225201	82.192	73	12	1	14	86	26	97	1.89e-37	127
MsaG014043	MtrunA17_Chr3g0132681	83.784	74	10	2	14	86	25	97	1.29e-35	122
MsaG014043	MtrunA17_Chr3g0101111	78.082	73	15	1	14	86	25	96	2.53e-35	121
MsaG014043	MtrunA17_Chr3g0101091	78.082	73	15	1	14	86	25	96	2.66e-35	121
MsaG014043	MtrunA17_Chr3g0101081	78.082	73	15	1	14	86	25	96	2.66e-35	121
MsaG014043	MtrunA17_Chr5g0445271	71.233	73	20	1	14	86	26	97	1.70e-30	109
MsaG014043	MtrunA17_Chr5g0447731	67.123	73	23	1	14	86	22	93	1.18e-28	103
MsaG014043	MtrunA17_Chr1g0190951	53.425	73	33	1	14	86	23	94	5.57e-22	88.2
MsaG014043	MtrunA17_Chr1g0205471	53.425	73	33	1	14	86	23	94	1.07e-21	87.4
MsaG014043	MtrunA17_Chr3g0116811	54.795	73	32	1	14	86	25	96	1.83e-21	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014043	AT5G55560.1	71.233	73	20	1	14	86	30	101	5.15e-30	108
MsaG014043	AT3G04910.1	54.054	74	33	1	14	87	23	95	9.52e-21	85.1
MsaG014043	AT5G28080.2	51.351	74	35	1	14	87	24	96	1.76e-19	81.6
MsaG014043	AT3G22420.6	47.297	74	38	1	14	87	23	95	2.12e-19	81.3
MsaG014043	AT3G22420.4	47.297	74	38	1	14	87	94	166	2.13e-19	81.3
MsaG014043	AT3G22420.3	47.297	74	38	1	14	87	94	166	2.31e-19	81.3
MsaG014043	AT3G22420.1	47.297	74	38	1	14	87	23	95	2.39e-19	81.3
MsaG014043	AT3G22420.2	47.297	74	38	1	14	87	23	95	2.42e-19	81.3
MsaG014043	AT3G22420.5	47.297	74	38	1	14	87	23	95	2.45e-19	81.3
MsaG014043	AT3G48260.1	56.164	73	31	1	14	86	21	92	3.74e-19	80.5

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Find 20 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGACCCAACTGGAATA+TGG	0.426612	3:+65904457	MsaT014043.1:CDS
AAAGCATTTGATCAAAGAGA+AGG	0.567617	3:+65904529	MsaT014043.1:CDS
AAAGCCTATCAATCATTGCG+GGG	0.706697	3:-65904600	None:intergenic
AACGAGCTACTTCTAGGATC+AGG	0.510164	3:+65904487	MsaT014043.1:CDS
ACATGGAATCATGTTAAACT+CGG	0.619363	3:+65904562	MsaT014043.1:CDS
AGATACAACGAGCTACTTCT+AGG	0.410049	3:+65904481	MsaT014043.1:CDS
ATCCCTCCAAACAGAGTAAA+GGG	0.426117	3:-65904671	None:intergenic
ATGACCCCGCAATGATTGAT+AGG	0.452773	3:+65904596	MsaT014043.1:CDS
CATCCCTCCAAACAGAGTAA+AGG	0.514403	3:-65904672	None:intergenic
GAGAAGGAATAGAAGTTACA+TGG	0.564796	3:+65904545	MsaT014043.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	65904436	65904708	65904436	ID=MsaG014043
Chr3	mRNA	65904436	65904708	65904436	ID=MsaT014043.1;Parent=MsaG014043
Chr3	exon	65904436	65904708	65904436	ID=MsaT014043.1.exon1;Parent=MsaT014043.1
Chr3	CDS	65904436	65904708	65904436	ID=cds.MsaT014043.1;Parent=MsaT014043.1

Gene Sequence	>MsaT014043.1 ATGACTCAGAACCATTTGTTGAAACTGACCCAACTGGAATATGGTAGATACAACGAGCTACTTCTAGGATCAGGTTCTTGTAAAAAAGTGTACAAAGCATTTGATCAAAGAGAAGGAATAGAAGTTACATGGAATCATGTTAAACTCGGAAATTTCAGTAATGACCCCGCAATGATTGATAGGCTTTACTCTGAAGTGAAATTGCTTAGAAGCATGAAAATCAAAAACATCATTGCCCTTTACTCTGTTTGGAGGGATGTTTACAAGTGGTAA
Protein sequence	>MsaT014043.1 MTQNHLLKLTQLEYGRYNELLLGSGSCKKVYKAFDQREGIEVTWNHVKLGNFSNDPAMIDRLYSEVKLLRSMKIKNIIALYSVWRDVYKW*