AlfalfaGEDB | MsaG014126

M. sativa ssp. caerulea / MsaG014126

KEGG: -
GO: GO:0000156 GO:0000160 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0080090 GO:0101006 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014126	XP_003625416.1	68.750	112	19	1	2	97	4	115	5.61e-42	144

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014126	sp\|F4JZT3\|ARR24_ARATH	44.118	102	40	2	13	97	11	112	4.85e-19	79.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014126	tr\|G7KYH3\|G7KYH3_MEDTR	68.750	112	19	1	2	97	4	115	2.68e-42	144

TFs/TRs:

Gene ID	Type	Classification
MsaG014126	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG014126	MsaG038369	0.800546	2.291607e-48	3.136850e-46
MsaG014126	MsaG040037	0.811404	1.221215e-50	2.158275e-48
MsaG014126	MsaG046441	0.801562	1.423543e-48	1.993821e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014126	MtrunA17_Chr7g0262351	68.750	112	19	1	2	97	4	115	5.16e-46	144
MsaG014126	MtrunA17_Chr6g0472261	67.105	76	9	1	11	70	1	76	4.54e-26	92.0
MsaG014126	MtrunA17_Chr8g0364781	47.573	103	35	3	14	97	6	108	1.36e-18	75.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014126	AT5G26594.1	44.118	102	40	2	13	97	11	112	4.93e-20	79.0
MsaG014126	AT3G04280.1	39.175	97	40	3	20	97	22	118	5.06e-12	58.5
MsaG014126	AT3G04280.2	39.175	97	40	3	20	97	22	118	5.06e-12	58.5
MsaG014126	AT3G04280.3	39.175	97	40	3	20	97	22	118	5.06e-12	58.5

Find 19 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACAATAAGTGTTGTTAATT+CGG	0.276668	3:+67956954	None:intergenic
TTTAATTATTCTCGTGGATA+AGG	0.314312	3:-67956813	MsaT014126.1:CDS
CTTATGGAACCTCAAAATTC+AGG	0.357949	3:-67956979	MsaT014126.1:CDS
AAACAAGAATTTATGAAAGC+TGG	0.381997	3:-67956552	MsaT014126.1:CDS
ACGGAAAGGGAAAGGGCTTA+TGG	0.383792	3:-67956995	MsaT014126.1:CDS
ACTAAGAAACTGCGAGCAAT+TGG	0.424462	3:-67956621	MsaT014126.1:CDS
AAGGAAATGCCTATCATGAA+TGG	0.455972	3:-67956794	MsaT014126.1:CDS
AAATGGAAGGTCAACGGAAA+GGG	0.471450	3:-67957008	MsaT014126.1:CDS
ACCTCAATCCCATTCATGAT+AGG	0.485829	3:+67956785	None:intergenic
AACAAGAATTTATGAAAGCT+GGG	0.487065	3:-67956551	MsaT014126.1:CDS
GAAGGTCAACGGAAAGGGAA+AGG	0.504074	3:-67957003	MsaT014126.1:CDS
AGGAAATGCCTATCATGAAT+GGG	0.507526	3:-67956793	MsaT014126.1:CDS
GCCTATCATGAATGGGATTG+AGG	0.520152	3:-67956786	MsaT014126.1:intron
GGTATTCGTAGCATGATTGT+TGG	0.523765	3:-67956600	MsaT014126.1:CDS
CTTGTTCGAATGATTCATCA+AGG	0.541897	3:-67956919	MsaT014126.1:CDS
AAGGTCAACGGAAAGGGAAA+GGG	0.548949	3:-67957002	MsaT014126.1:CDS
GGAACTTTGCACAAAATGGA+AGG	0.563063	3:-67957021	None:intergenic
AAAATGGAAGGTCAACGGAA+AGG	0.575882	3:-67957009	MsaT014126.1:CDS
TGCACAAAATGGAAGGTCAA+CGG	0.621446	3:-67957014	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	67956545	67957028	67956545	ID=MsaG014126
Chr3	mRNA	67956545	67957028	67956545	ID=MsaT014126.1;Parent=MsaG014126
Chr3	exon	67956545	67956646	67956545	ID=MsaT014126.1.exon3;Parent=MsaT014126.1
Chr3	CDS	67956545	67956646	67956545	ID=cds.MsaT014126.1;Parent=MsaT014126.1
Chr3	exon	67956787	67956837	67956787	ID=MsaT014126.1.exon2;Parent=MsaT014126.1
Chr3	CDS	67956787	67956837	67956787	ID=cds.MsaT014126.1;Parent=MsaT014126.1
Chr3	exon	67956885	67957028	67956885	ID=MsaT014126.1.exon1;Parent=MsaT014126.1
Chr3	CDS	67956885	67957028	67956885	ID=cds.MsaT014126.1;Parent=MsaT014126.1

Gene Sequence	>MsaT014126.1 ATGGAAGGTCAACGGAAAGGGAAAGGGCTTATGGAACCTCAAAATTCAGGATCCGAATTAACAACACTTATTGTAGATGATGTTAAGCTTGTTCGAATGATTCATCAAGGTCTATTGAAAAGAGCTCGTGTGAAAAATGAAGCTATTTTAATTATTCTCGTGGATAAGGAAATGCCTATCATGAATGGGATTGAGGCAACTAAGAAACTGCGAGCAATTGGTATTCGTAGCATGATTGTTGGTGTGTCGTCGTGTACAGAAACTGAAAAACAAGAATTTATGAAAGCTGGGAAGTAG
Protein sequence	>MsaT014126.1 MEGQRKGKGLMEPQNSGSELTTLIVDDVKLVRMIHQGLLKRARVKNEAILIILVDKEMPIMNGIEATKKLRAIGIRSMIVGVSSCTETEKQEFMKAGK*