Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014156 | XP_024635989.1 | 79.696 | 527 | 53 | 3 | 138 | 637 | 30 | 529 | 0.0 | 767 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014156 | sp|O22633|NOI4_ARATH | 77.778 | 63 | 12 | 2 | 58 | 119 | 3 | 64 | 1.34e-22 | 95.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014156 | tr|G7IV09|G7IV09_MEDTR | 79.696 | 527 | 53 | 3 | 138 | 637 | 30 | 529 | 0.0 | 767 |
Gene ID | Type | Classification |
---|---|---|
MsaG014156 | TF | C2C2-GATA |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014156 | MtrunA17_Chr3g0102511 | 79.317 | 527 | 53 | 4 | 138 | 637 | 30 | 527 | 0.0 | 758 |
MsaG014156 | MtrunA17_Chr3g0132751 | 51.592 | 157 | 49 | 2 | 137 | 266 | 181 | 337 | 3.82e-38 | 145 |
MsaG014156 | MtrunA17_Chr3g0102501 | 95.385 | 65 | 3 | 0 | 58 | 122 | 3 | 67 | 9.35e-37 | 132 |
MsaG014156 | MtrunA17_Chr5g0446701 | 75.000 | 60 | 13 | 1 | 58 | 117 | 2 | 59 | 6.32e-23 | 92.8 |
MsaG014156 | MtrunA17_Chr8g0381181 | 92.308 | 39 | 3 | 0 | 57 | 95 | 5 | 43 | 3.03e-19 | 82.4 |
MsaG014156 | MtrunA17_Chr4g0058001 | 58.730 | 63 | 26 | 0 | 57 | 119 | 4 | 66 | 2.65e-16 | 73.9 |
MsaG014156 | MtrunA17_Chr4g0049741 | 33.766 | 154 | 75 | 4 | 156 | 284 | 175 | 326 | 1.61e-15 | 78.2 |
MsaG014156 | MtrunA17_Chr3g0123181 | 80.556 | 36 | 7 | 0 | 57 | 92 | 6 | 41 | 6.88e-14 | 67.8 |
MsaG014156 | MtrunA17_Chr5g0427661 | 39.583 | 96 | 54 | 2 | 120 | 211 | 164 | 259 | 3.07e-13 | 70.9 |
MsaG014156 | MtrunA17_Chr3g0132761 | 49.153 | 59 | 27 | 1 | 144 | 202 | 189 | 244 | 3.09e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014156 | AT5G55850.2 | 69.737 | 76 | 20 | 3 | 48 | 122 | 10 | 83 | 4.71e-27 | 107 |
MsaG014156 | AT5G55850.1 | 74.242 | 66 | 15 | 2 | 58 | 122 | 3 | 67 | 3.84e-25 | 100 |
MsaG014156 | AT5G55850.3 | 77.778 | 63 | 12 | 2 | 58 | 119 | 3 | 64 | 1.37e-23 | 95.1 |
MsaG014156 | AT2G04410.1 | 86.667 | 45 | 6 | 0 | 58 | 102 | 3 | 47 | 2.72e-20 | 85.9 |
MsaG014156 | AT4G35655.1 | 80.556 | 36 | 7 | 0 | 59 | 94 | 6 | 41 | 9.62e-14 | 67.0 |
MsaG014156 | AT2G17660.1 | 50.704 | 71 | 26 | 2 | 60 | 130 | 7 | 68 | 1.06e-13 | 67.0 |
MsaG014156 | AT5G40645.1 | 62.963 | 54 | 18 | 1 | 61 | 112 | 13 | 66 | 1.72e-13 | 66.2 |
MsaG014156 | AT5G63270.1 | 80.556 | 36 | 7 | 0 | 58 | 93 | 4 | 39 | 1.89e-13 | 66.6 |
MsaG014156 | AT1G51600.1 | 60.465 | 43 | 17 | 0 | 158 | 200 | 223 | 265 | 5.95e-13 | 70.5 |
MsaG014156 | AT1G51600.2 | 60.465 | 43 | 17 | 0 | 158 | 200 | 223 | 265 | 5.95e-13 | 70.5 |
MsaG014156 | AT3G21175.2 | 62.791 | 43 | 16 | 0 | 158 | 200 | 217 | 259 | 9.67e-13 | 69.7 |
MsaG014156 | AT3G21175.1 | 62.791 | 43 | 16 | 0 | 158 | 200 | 219 | 261 | 9.88e-13 | 69.7 |
MsaG014156 | AT4G24470.1 | 58.140 | 43 | 18 | 0 | 158 | 200 | 214 | 256 | 8.23e-12 | 67.0 |
MsaG014156 | AT4G24470.2 | 58.140 | 43 | 18 | 0 | 158 | 200 | 214 | 256 | 8.23e-12 | 67.0 |
MsaG014156 | AT4G24470.3 | 58.140 | 43 | 18 | 0 | 158 | 200 | 214 | 256 | 8.53e-12 | 67.4 |
MsaG014156 | AT3G48450.1 | 75.000 | 36 | 9 | 0 | 58 | 93 | 5 | 40 | 8.80e-12 | 62.0 |
MsaG014156 | AT3G48450.2 | 75.000 | 36 | 9 | 0 | 58 | 93 | 5 | 40 | 8.80e-12 | 62.0 |
Find 166 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGGGATGGTTGGATGTTT+TGG | 0.197140 | 3:+68375791 | MsaT014156.1:CDS |
GCAGCAGCTGCAACACTTCT+AGG | 0.248224 | 3:-68375918 | None:intergenic |
CGGCATCGTTTGGGCCAAAA+AGG | 0.292655 | 3:+68368909 | MsaT014156.1:CDS |
ACGTTCAACAATGATGTCTT+TGG | 0.320129 | 3:-68373539 | None:intergenic |
CGAGTCAAGCGAAGTATAAA+AGG | 0.322466 | 3:+68375673 | MsaT014156.1:CDS |
GTAATGCATGCGGCATCGTT+TGG | 0.338639 | 3:+68368899 | MsaT014156.1:CDS |
GTTGATGTCAATATTCTTGA+AGG | 0.350912 | 3:+68371284 | MsaT014156.1:CDS |
ACCTTCAACAGTGATGGTTT+TGG | 0.354500 | 3:-68372547 | None:intergenic |
GGTTCAGTGGCAGTCTTTCC+TGG | 0.355842 | 3:-68363460 | None:intergenic |
ATAAGCTTTCCTCAATAAAC+TGG | 0.356792 | 3:-68363603 | None:intergenic |
GACATCCCATTCACCAAACT+TGG | 0.363721 | 3:-68363353 | None:intergenic |
CTAATGCGCCATGGGCCAAC+TGG | 0.374785 | 3:+68368862 | MsaT014156.1:CDS |
TCCAGAGCCCTCGTTGTTGA+AGG | 0.375130 | 3:+68373215 | MsaT014156.1:CDS |
CTGCTGCTGGGAATGAGGTT+GGG | 0.381146 | 3:+68375934 | MsaT014156.1:CDS |
GCTGCTGCTGGGAATGAGGT+TGG | 0.382906 | 3:+68375933 | MsaT014156.1:CDS |
AGAAGTGTTGCAGCTGCTGC+TGG | 0.390155 | 3:+68375921 | MsaT014156.1:CDS |
TTTGTTAGATAAGATGCGTT+TGG | 0.392286 | 3:+68363572 | MsaT014156.1:intron |
CTCCTCCTGAACCACCTTAG+AGG | 0.393068 | 3:-68375964 | None:intergenic |
GAGGATTGGTCCATTTGGTT+TGG | 0.394496 | 3:-68362436 | None:intergenic |
TCCAAAACCATCACTGTTGA+AGG | 0.401109 | 3:+68372546 | MsaT014156.1:CDS |
ACCTTTACCAGCGACGGCTT+TGG | 0.407481 | 3:-68371436 | None:intergenic |
GTTGGCCCATGGCGCATTAG+AGG | 0.409193 | 3:-68368859 | None:intergenic |
GGTTGGGCCATCCACCTCTA+AGG | 0.413696 | 3:+68375950 | MsaT014156.1:CDS |
GTCGAGAGGATTGGTCCATT+TGG | 0.415550 | 3:-68362441 | None:intergenic |
GGTCGGCCACTGCCCAAGTT+TGG | 0.415802 | 3:+68363340 | MsaT014156.1:CDS |
GTCTGTCATCCAAAATGAAC+AGG | 0.419563 | 3:+68371313 | MsaT014156.1:CDS |
TCAGGCACTATGACTGAATC+AGG | 0.426746 | 3:-68376064 | None:intergenic |
GGATCTTACACTCTGAGGTT+TGG | 0.426876 | 3:-68363509 | None:intergenic |
TCTTTCACCAACGATGGCTT+TGG | 0.428532 | 3:-68372878 | None:intergenic |
TAATGCATGCGGCATCGTTT+GGG | 0.428702 | 3:+68368900 | MsaT014156.1:CDS |
TTCTGTTGAGCAAAGTGATC+TGG | 0.431488 | 3:+68369495 | MsaT014156.1:CDS |
TTTAAAACTTACAAAGATGT+AGG | 0.435445 | 3:-68368717 | None:intergenic |
ATCCACCTCTAAGGTGGTTC+AGG | 0.436118 | 3:+68375959 | MsaT014156.1:CDS |
ATTAGGAACTGATCATTCTT+CGG | 0.440553 | 3:+68370337 | MsaT014156.1:CDS |
TGTTCCGTGTTCTGAAGATT+CGG | 0.449445 | 3:-68370303 | None:intergenic |
TGATCATTCTTCGGAAATTG+AGG | 0.457212 | 3:+68370346 | MsaT014156.1:CDS |
GTGAACCCCTCAGCTGAGGC+TGG | 0.458567 | 3:-68363382 | None:intergenic |
GGAACAAACACTCTTCGATT+AGG | 0.463069 | 3:+68370320 | MsaT014156.1:CDS |
ACTTGTTCATTGTGGATGAC+AGG | 0.465917 | 3:-68373094 | None:intergenic |
ACCTTCAACAACGAGGGCTC+TGG | 0.467308 | 3:-68373216 | None:intergenic |
AAGCGCTTCATGAATGGAGC+TGG | 0.469010 | 3:+68362376 | MsaT014156.1:CDS |
TCCAAAGCCGTCGCTGGTAA+AGG | 0.469062 | 3:+68371435 | MsaT014156.1:CDS |
GCAGTCTTTCCTGGTGACTC+AGG | 0.469511 | 3:-68363451 | None:intergenic |
TGCAGCTGCTGCTGGGAATG+AGG | 0.471752 | 3:+68375929 | MsaT014156.1:CDS |
CCCAACCTTGTCAATGTCAC+AGG | 0.471944 | 3:-68362496 | None:intergenic |
GTCAATATTACTGGTCATGA+TGG | 0.473633 | 3:+68372725 | MsaT014156.1:CDS |
TTTAAAACTACCTCGACAAA+GGG | 0.477354 | 3:-68372591 | None:intergenic |
AGCAACGGCGGAGTCATTGT+TGG | 0.477836 | 3:+68375602 | MsaT014156.1:CDS |
CTTACACTCTGAGGTTTGGC+AGG | 0.479806 | 3:-68363505 | None:intergenic |
ATTGATGTCAATGTTGTTGA+AGG | 0.484793 | 3:+68369971 | MsaT014156.1:CDS |
ATTGATGTCAATGTTGTTGA+AGG | 0.484793 | 3:+68373385 | MsaT014156.1:CDS |
GAAAATGTGTAGCTCTTCCT+TGG | 0.485385 | 3:-68375570 | None:intergenic |
GTAGACAAGCGCTTCATGAA+TGG | 0.485536 | 3:+68362370 | MsaT014156.1:CDS |
GTAATATTGACATCAATAAG+AGG | 0.487998 | 3:-68373052 | None:intergenic |
TTCGGAAATTGAGGATGAGC+AGG | 0.490008 | 3:+68370355 | MsaT014156.1:CDS |
CACTGCCCAAGTTTGGTGAA+TGG | 0.497688 | 3:+68363347 | MsaT014156.1:CDS |
TTTAACTGAGGAGAAGCAAC+AGG | 0.497704 | 3:-68376023 | None:intergenic |
ACTGCCCAAGTTTGGTGAAT+GGG | 0.500832 | 3:+68363348 | MsaT014156.1:CDS |
CTCGAGACTACAACTGTGAC+AGG | 0.502818 | 3:+68375702 | MsaT014156.1:CDS |
CCATTTGGTTTGGCTACAGT+CGG | 0.504193 | 3:-68362426 | None:intergenic |
TGAGGAGAAGCAACAGGCTC+AGG | 0.505800 | 3:-68376017 | None:intergenic |
ATTTAAAACTACCTTGTCAC+AGG | 0.507009 | 3:-68373590 | None:intergenic |
CCGACTGTAGCCAAACCAAA+TGG | 0.512326 | 3:+68362426 | MsaT014156.1:CDS |
GGTTTGGCAGGATCTAATGT+AGG | 0.512525 | 3:-68363493 | None:intergenic |
TCTAATGTAGGTTTGCTATG+AGG | 0.515216 | 3:-68363481 | None:intergenic |
ACAAATGTCTCCCTACTCCT+TGG | 0.518047 | 3:-68375882 | None:intergenic |
GCCGTTTAAAACTACCTCAC+AGG | 0.519661 | 3:-68373261 | None:intergenic |
CTCTGAACCTCCAAGGAGTA+GGG | 0.521645 | 3:+68375872 | MsaT014156.1:CDS |
CCCTCTATAATCTGCTGTGA+AGG | 0.521907 | 3:-68375774 | None:intergenic |
GCCTTCACAGCAGATTATAG+AGG | 0.523981 | 3:+68375773 | MsaT014156.1:CDS |
TCTCTGAACCTCCAAGGAGT+AGG | 0.525344 | 3:+68375871 | MsaT014156.1:CDS |
GTGATTATCTTACAGGATAA+CGG | 0.526248 | 3:+68363319 | MsaT014156.1:intron |
CCGTTTAAAACTACCTCACA+GGG | 0.526280 | 3:-68373260 | None:intergenic |
GAAACTTAGAGATCTCAGTA+AGG | 0.527767 | 3:+68369459 | MsaT014156.1:CDS |
ATTTGAACCTTCAACAGTGA+TGG | 0.528565 | 3:-68372553 | None:intergenic |
AACATAGCCGTCGAGAGGAT+TGG | 0.530360 | 3:-68362450 | None:intergenic |
GTAATATTGACCTCGAAAAG+AGG | 0.530782 | 3:-68372713 | None:intergenic |
CCACAATCTACCACCGCACC+AGG | 0.532119 | 3:-68362348 | None:intergenic |
GAAGGTGTGGAAGAGCTGCC+TGG | 0.532446 | 3:+68362330 | MsaT014156.1:intron |
AGAATTGCTTGCTACCCAAA+AGG | 0.537558 | 3:+68373408 | MsaT014156.1:CDS |
GATCCTTCCAAAGCCGTCGC+TGG | 0.537911 | 3:+68371429 | MsaT014156.1:CDS |
TAAGAACTTGCCATCTGCCT+CGG | 0.540089 | 3:+68375635 | MsaT014156.1:CDS |
CTCTCAGACGAGTCCTCTGA+AGG | 0.545989 | 3:-68375831 | None:intergenic |
GCAGATTATAGAGGGATGGT+TGG | 0.550419 | 3:+68375782 | MsaT014156.1:CDS |
GTTTAAAACTACCTCGACAA+AGG | 0.551598 | 3:-68372592 | None:intergenic |
AATGATCCAGCCTCAGCTGA+GGG | 0.552939 | 3:+68363376 | MsaT014156.1:CDS |
TGTAATTCAACATTGAGTGC+TGG | 0.554598 | 3:+68368675 | MsaT014156.1:CDS |
TGAGGTAGAGACACCTTCAG+AGG | 0.554678 | 3:+68375818 | MsaT014156.1:CDS |
ATACTCCTCTAATGCGCCAT+GGG | 0.555098 | 3:+68368854 | MsaT014156.1:CDS |
TTTATACTTCGCTTGACTCG+AGG | 0.555218 | 3:-68375670 | None:intergenic |
CACAGCAGATTATAGAGGGA+TGG | 0.555837 | 3:+68375778 | MsaT014156.1:CDS |
ATAATCTGCTGTGAAGGCAC+AGG | 0.556304 | 3:-68375768 | None:intergenic |
CTGTCCGCAATGACATCACT+AGG | 0.557847 | 3:+68375730 | MsaT014156.1:CDS |
AATGTCTCCCTACTCCTTGG+AGG | 0.559036 | 3:-68375879 | None:intergenic |
TGACATCACTAGGAGGATGT+TGG | 0.560937 | 3:+68375740 | MsaT014156.1:CDS |
GGAGGAGCCAGTGGGTGAAG+AGG | 0.561372 | 3:+68375980 | MsaT014156.1:CDS |
GAAGTGTTGCAGCTGCTGCT+GGG | 0.563734 | 3:+68375922 | MsaT014156.1:CDS |
GACATCATTGTTGAACGTGA+AGG | 0.564729 | 3:+68373544 | MsaT014156.1:CDS |
TAGCAGAAACAGTGTCCTCT+CGG | 0.566347 | 3:-68362400 | None:intergenic |
TCACCAACGATGGCTTTGGA+AGG | 0.566861 | 3:-68372874 | None:intergenic |
ACAGGCTCAGGAACAACCAC+AGG | 0.567602 | 3:-68376005 | None:intergenic |
ACAGGAACCTCTTCACCCAC+TGG | 0.569252 | 3:-68375987 | None:intergenic |
TAGTCTACCTCCGAGGCAGA+TGG | 0.574578 | 3:-68375645 | None:intergenic |
TGAACCACCTTAGAGGTGGA+TGG | 0.576803 | 3:-68375957 | None:intergenic |
CACATTAAACCCCTTTGTCG+AGG | 0.581798 | 3:+68372581 | MsaT014156.1:CDS |
CACTGTGAACCCCTCAGCTG+AGG | 0.582513 | 3:-68363386 | None:intergenic |
CACCTCTAAGGTGGTTCAGG+AGG | 0.584050 | 3:+68375962 | MsaT014156.1:CDS |
GCAACACTTCTAGGAGTGGA+AGG | 0.584072 | 3:-68375909 | None:intergenic |
CATTCACCAAACTTGGGCAG+TGG | 0.584670 | 3:-68363346 | None:intergenic |
GGTGGTTCAGGAGGAGCCAG+TGG | 0.585529 | 3:+68375971 | MsaT014156.1:CDS |
AATACTCCTCTAATGCGCCA+TGG | 0.590406 | 3:+68368853 | MsaT014156.1:CDS |
CCTGGTGCGGTGGTAGATTG+TGG | 0.592458 | 3:+68362348 | MsaT014156.1:CDS |
TTACCAGCGACGGCTTTGGA+AGG | 0.592635 | 3:-68371432 | None:intergenic |
AGTGGTTTACTTGTTCATTG+TGG | 0.592732 | 3:-68373102 | None:intergenic |
GGAAGAGCTGCCTGGTGCGG+TGG | 0.593643 | 3:+68362338 | MsaT014156.1:intron |
TGGGCCATCCACCTCTAAGG+TGG | 0.595383 | 3:+68375953 | MsaT014156.1:CDS |
TGCATTAAACCCCTGTGACA+AGG | 0.595945 | 3:+68373579 | MsaT014156.1:CDS |
TTTAAAACTACCTTGTCACA+GGG | 0.595987 | 3:-68373589 | None:intergenic |
TCAACAATGATGTCTTTGGA+AGG | 0.596052 | 3:-68373535 | None:intergenic |
GAGGTTCAGAGAACGTAGTA+CGG | 0.597636 | 3:-68375860 | None:intergenic |
ATATGCTCTTTCACCAACGA+TGG | 0.600258 | 3:-68372884 | None:intergenic |
ACATCCCATTCACCAAACTT+GGG | 0.601230 | 3:-68363352 | None:intergenic |
CCTTCACAGCAGATTATAGA+GGG | 0.602260 | 3:+68375774 | MsaT014156.1:CDS |
AGCGCTTCATGAATGGAGCT+GGG | 0.603915 | 3:+68362377 | MsaT014156.1:CDS |
GGTGGAAATCCTGAGTCACC+AGG | 0.606592 | 3:+68363442 | MsaT014156.1:CDS |
CTCCTGAACCACCTTAGAGG+TGG | 0.606716 | 3:-68375961 | None:intergenic |
GATCCTTCCAAAGCCATCGT+TGG | 0.606855 | 3:+68372871 | MsaT014156.1:CDS |
TGTGGAAGAGCTGCCTGGTG+CGG | 0.608112 | 3:+68362335 | MsaT014156.1:intron |
AGGTTTGCTATGAGGTTCAG+TGG | 0.608637 | 3:-68363473 | None:intergenic |
TACATTAAACCCTTGTGATG+AGG | 0.614599 | 3:+68371467 | MsaT014156.1:CDS |
AGAATATTGACATCAACAAG+AGG | 0.618031 | 3:-68371278 | None:intergenic |
ATTTGAACCTTCAACAACGA+GGG | 0.618095 | 3:-68373222 | None:intergenic |
TTAAGAACTACCTCATCACA+AGG | 0.621924 | 3:-68371477 | None:intergenic |
CAATGATCCAGCCTCAGCTG+AGG | 0.622617 | 3:+68363375 | MsaT014156.1:CDS |
TCAACAACGAGGGCTCTGGA+AGG | 0.627896 | 3:-68373212 | None:intergenic |
TGCATTAAACCTCTGTGACG+AGG | 0.628965 | 3:+68372912 | MsaT014156.1:CDS |
CTACGTTCTCTGAACCTCCA+AGG | 0.629866 | 3:+68375865 | MsaT014156.1:CDS |
AGCTGCAACACTTCTAGGAG+TGG | 0.630568 | 3:-68375913 | None:intergenic |
AAATAGGATCTTACACTCTG+AGG | 0.640101 | 3:-68363514 | None:intergenic |
TTCAGAGATTATAGCAACGG+CGG | 0.643970 | 3:+68375590 | MsaT014156.1:CDS |
TCCTCCTAGTGATGTCATTG+CGG | 0.644276 | 3:-68375734 | None:intergenic |
AAACTTAGAGATCTCAGTAA+GGG | 0.647846 | 3:+68369460 | MsaT014156.1:CDS |
CCAACCTTGTCAATGTCACA+GGG | 0.650242 | 3:-68362495 | None:intergenic |
ATTCGAACCTTTACCAGCGA+CGG | 0.652691 | 3:-68371442 | None:intergenic |
AAATGGACCAATCCTCTCGA+CGG | 0.654367 | 3:+68362443 | MsaT014156.1:CDS |
GAACTTGCCATCTGCCTCGG+AGG | 0.655283 | 3:+68375638 | MsaT014156.1:CDS |
ATGAATGGAGCTGGGCCGAG+AGG | 0.655693 | 3:+68362385 | MsaT014156.1:CDS |
TACACAACATAGCCGTCGAG+AGG | 0.661887 | 3:-68362455 | None:intergenic |
AAAACATTATGTAATGCATG+CGG | 0.668222 | 3:+68368889 | MsaT014156.1:CDS |
AGTGGGTGAAGAGGTTCCTG+TGG | 0.668366 | 3:+68375989 | MsaT014156.1:CDS |
GTGGTTCAGGAGGAGCCAGT+GGG | 0.669285 | 3:+68375972 | MsaT014156.1:CDS |
TTATCTTACAGGATAACGGT+CGG | 0.686094 | 3:+68363323 | MsaT014156.1:intron |
ATGATCCAGCCTCAGCTGAG+GGG | 0.688463 | 3:+68363377 | MsaT014156.1:CDS |
TTAAAACTACCTCGACAAAG+GGG | 0.692618 | 3:-68372590 | None:intergenic |
TTAAAACTACCTTGTCACAG+GGG | 0.700657 | 3:-68373588 | None:intergenic |
TCGAGACTACAACTGTGACA+GGG | 0.707704 | 3:+68375703 | MsaT014156.1:CDS |
TATTTGAACCTTCAACAACG+AGG | 0.709246 | 3:-68373223 | None:intergenic |
TAAGAACTACCTCATCACAA+GGG | 0.711590 | 3:-68371476 | None:intergenic |
CTATGAATGCTGTTTAACTG+AGG | 0.713936 | 3:-68376035 | None:intergenic |
TCAGAGAACGTAGTACGGAG+TGG | 0.715297 | 3:-68375855 | None:intergenic |
TCCGCAATGACATCACTAGG+AGG | 0.723923 | 3:+68375733 | MsaT014156.1:CDS |
TTGGCCGAATCTTCAGAACA+CGG | 0.728749 | 3:+68370299 | MsaT014156.1:CDS |
TCATGCTTTAAACCCCTGTG+AGG | 0.732979 | 3:+68373247 | MsaT014156.1:CDS |
CGAGGTGTAGTCTACCTCCG+AGG | 0.748599 | 3:-68375652 | None:intergenic |
TTAAAACTACCTCGTCACAG+AGG | 0.750185 | 3:-68372921 | None:intergenic |
CGTTTAAAACTACCTCACAG+GGG | 0.752118 | 3:-68373259 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 68362000 | 68376079 | 68362000 | ID=MsaG014156 |
Chr3 | mRNA | 68362000 | 68376079 | 68362000 | ID=MsaT014156.1;Parent=MsaG014156 |
Chr3 | exon | 68362000 | 68362002 | 68362000 | ID=MsaT014156.1.exon1;Parent=MsaT014156.1 |
Chr3 | CDS | 68362000 | 68362002 | 68362000 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68362345 | 68362512 | 68362345 | ID=MsaT014156.1.exon2;Parent=MsaT014156.1 |
Chr3 | CDS | 68362345 | 68362512 | 68362345 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68363334 | 68363522 | 68363334 | ID=MsaT014156.1.exon3;Parent=MsaT014156.1 |
Chr3 | CDS | 68363334 | 68363522 | 68363334 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68363580 | 68363630 | 68363580 | ID=MsaT014156.1.exon4;Parent=MsaT014156.1 |
Chr3 | CDS | 68363580 | 68363630 | 68363580 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68368675 | 68368727 | 68368675 | ID=MsaT014156.1.exon5;Parent=MsaT014156.1 |
Chr3 | CDS | 68368675 | 68368727 | 68368675 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68368819 | 68368930 | 68368819 | ID=MsaT014156.1.exon6;Parent=MsaT014156.1 |
Chr3 | CDS | 68368819 | 68368930 | 68368819 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68369457 | 68369516 | 68369457 | ID=MsaT014156.1.exon7;Parent=MsaT014156.1 |
Chr3 | CDS | 68369457 | 68369516 | 68369457 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68369962 | 68370021 | 68369962 | ID=MsaT014156.1.exon8;Parent=MsaT014156.1 |
Chr3 | CDS | 68369962 | 68370021 | 68369962 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68370296 | 68370376 | 68370296 | ID=MsaT014156.1.exon9;Parent=MsaT014156.1 |
Chr3 | CDS | 68370296 | 68370376 | 68370296 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68371275 | 68371334 | 68371275 | ID=MsaT014156.1.exon10;Parent=MsaT014156.1 |
Chr3 | CDS | 68371275 | 68371334 | 68371275 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68371417 | 68371488 | 68371417 | ID=MsaT014156.1.exon11;Parent=MsaT014156.1 |
Chr3 | CDS | 68371417 | 68371488 | 68371417 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68372528 | 68372602 | 68372528 | ID=MsaT014156.1.exon12;Parent=MsaT014156.1 |
Chr3 | CDS | 68372528 | 68372602 | 68372528 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68372710 | 68372775 | 68372710 | ID=MsaT014156.1.exon13;Parent=MsaT014156.1 |
Chr3 | CDS | 68372710 | 68372775 | 68372710 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68372859 | 68372933 | 68372859 | ID=MsaT014156.1.exon14;Parent=MsaT014156.1 |
Chr3 | CDS | 68372859 | 68372933 | 68372859 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68373049 | 68373114 | 68373049 | ID=MsaT014156.1.exon15;Parent=MsaT014156.1 |
Chr3 | CDS | 68373049 | 68373114 | 68373049 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68373197 | 68373268 | 68373197 | ID=MsaT014156.1.exon16;Parent=MsaT014156.1 |
Chr3 | CDS | 68373197 | 68373268 | 68373197 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68373376 | 68373435 | 68373376 | ID=MsaT014156.1.exon17;Parent=MsaT014156.1 |
Chr3 | CDS | 68373376 | 68373435 | 68373376 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68373520 | 68373600 | 68373520 | ID=MsaT014156.1.exon18;Parent=MsaT014156.1 |
Chr3 | CDS | 68373520 | 68373600 | 68373520 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Chr3 | exon | 68375570 | 68376079 | 68375570 | ID=MsaT014156.1.exon19;Parent=MsaT014156.1 |
Chr3 | CDS | 68375570 | 68376079 | 68375570 | ID=cds.MsaT014156.1;Parent=MsaT014156.1 |
Gene Sequence |
Protein sequence |