AlfalfaGEDB | MsaG014164

M. sativa ssp. caerulea / MsaG014164

KEGG: K04371 K14512 K20535 K20536 K20537 K20600
GO: GO:0000165 GO:0000302 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014164	XP_003600359.1	92.371	367	28	0	1	367	1	367	0.0	717

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014164	sp\|Q39027\|MPK7_ARATH	71.739	368	102	2	1	367	1	367	0.0	544

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014164	tr\|G7IV22\|G7IV22_MEDTR	92.371	367	28	0	1	367	1	367	0.0	717

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG014164	0.841787	7.139967e-58	2.948969e-55
MsaG000115	MsaG014164	0.812534	6.944683e-51	1.262037e-48
MsaG000135	MsaG014164	0.865762	9.346730e-65	9.103453e-62
MsaG000228	MsaG014164	0.817606	5.261477e-52	1.087078e-49
MsaG000242	MsaG014164	0.853226	5.284232e-61	3.204671e-58
MsaG000250	MsaG014164	0.827178	3.220941e-54	8.607102e-52
MsaG000325	MsaG014164	0.863319	5.383135e-64	4.757302e-61
MsaG000385	MsaG014164	0.834443	5.436423e-56	1.790961e-53
MsaG000408	MsaG014164	0.817524	5.490283e-52	1.131972e-49
MsaG000419	MsaG014164	0.883890	6.555379e-71	1.422951e-67

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014164	MtrunA17_Chr3g0102571	81.687	415	28	1	1	367	1	415	0.0	696
MsaG014164	MtrunA17_Chr8g0378831	72.826	368	98	2	1	367	1	367	0.0	563
MsaG014164	MtrunA17_Chr3g0141871	69.315	365	110	2	1	364	1	364	0.0	529
MsaG014164	MtrunA17_Chr3g0102601	88.519	270	14	2	98	367	1	253	1.05e-175	488
MsaG014164	MtrunA17_Chr5g0397261	51.873	347	162	5	19	362	27	371	2.18e-132	383
MsaG014164	MtrunA17_Chr7g0248461	52.149	349	158	6	19	362	24	368	2.14e-131	380
MsaG014164	MtrunA17_Chr4g0030231	51.862	349	159	5	19	362	26	370	3.31e-129	375
MsaG014164	MtrunA17_Chr8g0348481	50.143	349	165	6	19	362	23	367	1.11e-128	374
MsaG014164	MtrunA17_Chr4g0045841	49.304	359	176	5	7	362	29	384	1.21e-128	374
MsaG014164	MtrunA17_Chr8g0387401	51.289	349	161	6	19	362	38	382	1.97e-128	374

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014164	AT2G18170.1	71.739	368	102	2	1	367	1	367	0.0	544
MsaG014164	AT1G10210.2	70.109	368	108	2	1	367	1	367	0.0	534
MsaG014164	AT1G10210.3	70.109	368	108	2	1	367	1	367	0.0	534
MsaG014164	AT1G10210.1	70.109	368	108	2	1	367	1	367	0.0	534
MsaG014164	AT1G59580.2	68.378	370	113	3	1	367	1	369	0.0	518
MsaG014164	AT1G59580.1	68.378	370	113	3	1	367	1	369	0.0	518
MsaG014164	AT4G36450.1	69.041	365	107	4	1	363	1	361	0.0	508
MsaG014164	AT1G07880.2	52.023	346	157	5	19	359	19	360	2.89e-130	378
MsaG014164	AT4G01370.1	51.289	349	161	6	19	362	29	373	8.17e-130	377
MsaG014164	AT3G45640.1	52.299	348	157	6	19	361	24	367	3.07e-128	373

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Find 78 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAATTATAAGTGTTCT+TGG	0.237819	3:-68464546	MsaT014164.1:CDS
AAAGCATTGTTATAAGATGT+GGG	0.524285	3:-68465770	MsaT014164.1:CDS
AAATCACTTCCCTATACACA+GGG	0.637638	3:-68464468	MsaT014164.1:CDS
AAATGATTAGAGAAATGATG+TGG	0.617892	3:-68464239	MsaT014164.1:CDS
AACGGACCACATATCGATGG+AGG	0.683066	3:+68464638	None:intergenic
AAGTGATTTGATGAATGCCT+TGG	0.604299	3:+68464482	None:intergenic
AATCACTTCCCTATACACAG+GGG	0.813996	3:-68464467	MsaT014164.1:CDS
AATTGCTAATCCGAAAACCA+AGG	0.681733	3:-68464499	MsaT014164.1:CDS
AATTGTGTCCCCTGTGTATA+GGG	0.357528	3:+68464459	None:intergenic
ACACCACGCCATATGTTCCT+CGG	0.562625	3:+68465698	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	68464191	68465836	68464191	ID=MsaG014164
Chr3	mRNA	68464191	68465836	68464191	ID=MsaT014164.1;Parent=MsaG014164
Chr3	exon	68464191	68464874	68464191	ID=MsaT014164.1.exon2;Parent=MsaT014164.1
Chr3	CDS	68464191	68464874	68464191	ID=cds.MsaT014164.1;Parent=MsaT014164.1
Chr3	exon	68465414	68465836	68465414	ID=MsaT014164.1.exon1;Parent=MsaT014164.1
Chr3	CDS	68465414	68465836	68465414	ID=cds.MsaT014164.1;Parent=MsaT014164.1

Gene Sequence

>MsaT014164.1

ATGGCAACTTCAGTCGAACCCGCGAACAGAAAAAGGCCAAGGAGAAAGCATTGTTATAAGATGTGGGAAACATTGTTTGATATTCATACGAAGTATCGCCCAATCAAGCCTATTGGCCGAGGAACATATGGCGTGGTGTGCTCATCCATCAATATGGATACCAATGAGAAAGTGGCAATCAAGAAGATTAGCAATGTATTTGATGATTGTGGTGATGCACTCAGAGCTTTAAGGGAGATGAAGTTGCTTAGACATGTTCGGCATGAGAATTTGATTGCTCTGAAAGATGTTATGATACCAGACCAAAGAACAAGTTTTAAGGATATCTACTTGGTCTATGAACTCATGGATAAAGATCTTCATCGTATTATCAAATCCTCTAAGCCACTTACCAATGATCATTGCAAACTTTACTTAGTTCAGTTACTTCAAGGTCTAAATTATCTTCATTCGGCAAATATTCTACACCGGGACCTGAAGCCTGAGAATCTGCTCGTCAATGCAAATTGTGATTTGAAGATATGTGATTTCGGGCTTGCTCGGGAAAATCAGGTTGATGGCGAGATTATGACAGAGTATGTTGTCACGCGCTGGTATCGAGCTCCAGAGCTTCTATTAGGATGTGGCAATTATGGAACCTCCATCGATATGTGGTCCGTTGGATGCATTTTTGCTCAAATGCTTGGTAGAAAGCCAATTTTCCCTGGAAAGGATTCGTTGCACCAAATAAAACTAATTATAAGTGTTCTTGGAAGCCAAGAGTCTGATCTCGAGTTAATTGCTAATCCGAAAACCAAGGCATTCATCAAATCACTTCCCTATACACAGGGGACACAATTCTCTCAGCTATACCCACAAGCAGATCCATTAGCCATAGATTTGTTACAAAAAATGCTTGTGTTTGATCCAACTAAAAGAATTACTGCATCAGAAGCACTCCAACATCCTTATATGGCAGATCTATGTGATGATCAATGGCGTAACCGTCCTCCTCAAGTTCCGGTCAATCTTCACATTGATGAAAATTGGGATAACAAAATGATTAGAGAAATGATGTGGAATGAGATGCTTAATTACCATCCTGAAGCTGCTTTTGTCAATGAATAG

Protein sequence

>MsaT014164.1

MATSVEPANRKRPRRKHCYKMWETLFDIHTKYRPIKPIGRGTYGVVCSSINMDTNEKVAIKKISNVFDDCGDALRALREMKLLRHVRHENLIALKDVMIPDQRTSFKDIYLVYELMDKDLHRIIKSSKPLTNDHCKLYLVQLLQGLNYLHSANILHRDLKPENLLVNANCDLKICDFGLARENQVDGEIMTEYVVTRWYRAPELLLGCGNYGTSIDMWSVGCIFAQMLGRKPIFPGKDSLHQIKLIISVLGSQESDLELIANPKTKAFIKSLPYTQGTQFSQLYPQADPLAIDLLQKMLVFDPTKRITASEALQHPYMADLCDDQWRNRPPQVPVNLHIDENWDNKMIREMMWNEMLNYHPEAAFVNE*