AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG014171


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG014171 MtrunA17_Chr3g0102571 57.692 416 57 8 1 297 1 416 2.65e-150 427
MsaG014171 MtrunA17_Chr8g0378831 54.743 369 94 6 1 297 1 368 5.55e-125 361
MsaG014171 MtrunA17_Chr3g0141871 49.593 369 113 6 1 297 1 368 2.33e-109 322
MsaG014171 MtrunA17_Chr3g0102601 52.222 270 43 7 98 297 1 254 5.45e-80 243
MsaG014171 MtrunA17_Chr5g0397261 39.769 347 133 9 19 291 27 371 1.47e-74 233
MsaG014171 MtrunA17_Chr8g0387401 40.401 349 128 9 19 291 38 382 2.65e-74 233
MsaG014171 MtrunA17_Chr4g0045841 38.728 346 137 8 19 291 41 384 1.48e-70 223
MsaG014171 MtrunA17_Chr4g0030151 40.934 364 137 11 5 293 11 371 4.84e-70 221
MsaG014171 MtrunA17_Chr7g0248461 40.115 349 129 12 19 291 24 368 1.11e-69 220
MsaG014171 MtrunA17_Chr4g0030231 39.542 349 131 9 19 291 26 370 1.48e-69 220
MsaG014171 MtrunA17_Chr8g0348481 38.571 350 133 10 19 291 23 367 4.61e-69 218
MsaG014171 MtrunA17_Chr3g0102611 93.023 86 6 0 1 86 1 86 7.75e-54 170
MsaG014171 MtrunA17_Chr6g0482681 33.243 367 159 11 7 291 64 426 1.47e-49 172
MsaG014171 MtrunA17_Chr5g0443351 35.088 342 138 11 31 291 21 359 2.06e-49 170
MsaG014171 MtrunA17_Chr3g0096631 35.088 342 138 9 31 291 24 362 4.20e-49 172
MsaG014171 MtrunA17_Chr2g0287271 34.670 349 144 11 24 291 17 362 6.01e-49 171
MsaG014171 MtrunA17_Chr4g0065851 34.627 335 135 11 38 291 31 362 7.60e-47 165
MsaG014171 MtrunA17_Chr8g0392811 43.350 203 87 4 20 197 105 304 3.61e-46 164
MsaG014171 MtrunA17_Chr8g0359091 44.724 199 82 5 24 195 18 215 7.48e-46 162
MsaG014171 MtrunA17_Chr2g0314321 44.865 185 72 5 31 189 24 204 9.97e-44 157
MsaG014171 MtrunA17_Chr8g0378851 61.856 97 37 0 1 97 1 97 2.39e-37 128
MsaG014171 MtrunA17_Chr3g0102581 71.277 94 26 1 28 120 2 95 7.28e-36 128
MsaG014171 MtrunA17_Chr2g0293491 31.741 293 122 7 31 250 3 290 1.17e-34 127
MsaG014171 MtrunA17_Chr4g0051261 31.058 293 124 8 31 250 3 290 4.69e-34 125
MsaG014171 MtrunA17_Chr3g0099951 28.819 288 122 9 38 250 20 299 9.05e-28 111
MsaG014171 MtrunA17_Chr5g0409421 32.069 290 115 11 31 247 3 283 3.95e-27 109
MsaG014171 MtrunA17_Chr8g0369451 31.379 290 117 11 31 247 3 283 5.47e-27 109
MsaG014171 MtrunA17_Chr6g0483151 30.435 299 126 9 38 266 20 306 2.90e-26 107
MsaG014171 MtrunA17_Chr3g0093571 34.197 193 92 4 38 195 31 223 2.15e-25 105
MsaG014171 MtrunA17_Chr8g0378871 57.447 94 38 2 205 297 61 153 3.46e-25 98.6
MsaG014171 MtrunA17_Chr3g0093391 32.663 199 99 4 32 195 23 221 1.25e-24 103
MsaG014171 MtrunA17_Chr4g0002001 26.861 309 142 7 31 255 3 311 1.41e-24 100
MsaG014171 MtrunA17_Chr4g0030241 73.333 60 15 1 136 195 27 85 1.93e-23 94.7
MsaG014171 MtrunA17_Chr8g0377071 35.638 188 95 3 31 195 384 568 2.28e-23 100
MsaG014171 MtrunA17_Chr3g0122781 35.106 188 96 3 31 195 415 599 7.90e-23 98.6
MsaG014171 MtrunA17_Chr8g0339221 28.621 290 124 10 32 247 4 284 1.06e-21 94.4
MsaG014171 MtrunA17_Chr5g0396361 33.511 188 98 4 32 195 140 324 2.23e-21 94.0
MsaG014171 MtrunA17_Chr4g0057791 28.283 297 133 8 30 247 216 511 1.20e-20 91.7
MsaG014171 MtrunA17_Chr8g0350311 33.333 186 89 5 38 195 145 323 1.23e-19 88.6
MsaG014171 MtrunA17_Chr6g0453711 33.854 192 92 8 32 195 110 294 1.94e-19 88.6
MsaG014171 MtrunA17_Chr7g0246591 32.258 186 91 5 38 195 147 325 2.70e-19 87.8
MsaG014171 MtrunA17_Chr8g0383451 32.967 182 95 4 38 195 4 182 4.10e-19 87.0
MsaG014171 MtrunA17_Chr1g0194201 26.578 301 138 9 32 256 75 368 1.33e-18 85.5
MsaG014171 MtrunA17_Chr1g0193081 31.720 186 92 5 38 195 81 259 1.62e-18 85.1
MsaG014171 MtrunA17_Chr2g0284091 32.258 186 91 6 38 195 46 224 2.12e-18 84.3
MsaG014171 MtrunA17_Chr2g0320011 31.915 188 89 6 38 195 94 272 3.25e-18 84.3
MsaG014171 MtrunA17_Chr7g0270371 26.804 291 126 10 38 250 81 362 5.09e-18 83.6
MsaG014171 MtrunA17_Chr2g0277011 29.787 188 93 6 38 195 96 274 4.00e-16 78.2
MsaG014171 MtrunA17_Chr4g0066691 31.429 210 105 8 38 221 110 306 1.42e-15 77.0
MsaG014171 MtrunA17_Chr7g0274941 25.969 258 142 8 36 247 20 274 1.98e-14 72.4
MsaG014171 MtrunA17_Chr1g0190131 29.740 269 142 11 21 247 1 264 5.70e-14 70.5
MsaG014171 MtrunA17_Chr4g0001331 27.444 266 140 10 28 247 16 274 1.51e-12 67.8
MsaG014171 MtrunA17_Chr8g0379091 34.911 169 88 6 36 183 30 197 1.00e-11 65.1
MsaG014171 MtrunA17_Chr2g0284031 33.333 168 92 6 36 183 35 202 1.30e-11 64.7
MsaG014171 MtrunA17_Chr1g0205421 27.863 262 140 9 30 247 10 266 2.69e-11 63.9
MsaG014171 MtrunA17_Chr1g0157131 27.599 279 131 13 28 249 70 334 3.54e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG014171 AT1G10210.2 53.261 368 99 7 1 296 1 367 7.12e-116 338
MsaG014171 AT1G10210.3 53.261 368 99 7 1 296 1 367 7.12e-116 338
MsaG014171 AT1G10210.1 53.261 368 99 7 1 296 1 367 7.12e-116 338
MsaG014171 AT2G18170.1 52.432 370 101 7 1 297 1 368 1.72e-114 335
MsaG014171 AT1G59580.2 50.541 370 108 8 1 296 1 369 1.59e-104 310
MsaG014171 AT1G59580.1 50.541 370 108 8 1 296 1 369 1.59e-104 310
MsaG014171 AT4G36450.1 50.685 365 103 8 1 292 1 361 8.26e-103 305
MsaG014171 AT2G43790.1 38.439 346 138 8 19 291 49 392 1.63e-71 226
MsaG014171 AT4G01370.1 40.401 349 128 12 19 291 29 373 1.18e-70 223
MsaG014171 AT3G59790.1 38.356 365 150 10 2 293 29 391 1.13e-69 221
MsaG014171 AT1G07880.2 39.835 364 139 10 1 288 1 360 2.47e-69 219
MsaG014171 AT3G45640.1 39.335 361 137 11 7 290 12 367 2.21e-68 217
MsaG014171 AT4G11330.1 39.216 357 127 14 15 290 25 372 5.02e-66 211
MsaG014171 AT1G01560.2 38.682 349 132 10 19 290 26 369 5.84e-64 206
MsaG014171 AT2G46070.1 37.176 347 142 10 19 291 27 371 4.01e-61 198
MsaG014171 AT2G46070.3 37.176 347 142 10 19 291 61 405 7.88e-61 199
MsaG014171 AT1G07880.1 48.165 218 89 4 1 195 1 217 5.41e-60 192
MsaG014171 AT1G01560.4 46.018 226 90 5 19 221 26 242 5.52e-58 187
MsaG014171 AT1G01560.1 46.018 226 90 5 19 221 26 242 5.52e-58 187
MsaG014171 AT2G46070.2 50.500 200 75 4 19 195 27 225 1.15e-57 188
MsaG014171 AT1G01560.3 49.500 200 77 4 19 195 26 224 2.36e-57 188
MsaG014171 AT3G14720.2 35.965 342 135 12 31 291 24 362 5.59e-53 179
MsaG014171 AT3G14720.3 35.965 342 135 12 31 291 24 362 5.59e-53 179
MsaG014171 AT2G01450.3 33.621 348 149 11 24 291 8 353 6.75e-50 172
MsaG014171 AT2G01450.1 33.621 348 149 11 24 291 8 353 6.75e-50 172
MsaG014171 AT2G01450.2 33.621 348 149 11 24 291 8 353 6.75e-50 172
MsaG014171 AT2G01450.4 33.621 348 149 11 24 291 8 353 6.75e-50 172
MsaG014171 AT1G53510.1 35.860 343 134 12 31 291 24 362 9.87e-50 174
MsaG014171 AT3G14720.1 45.729 199 80 5 24 195 17 214 5.17e-49 172
MsaG014171 AT2G42880.2 36.228 334 131 9 38 291 31 362 8.16e-49 169
MsaG014171 AT1G73670.1 34.000 350 145 11 24 291 82 427 1.29e-48 170
MsaG014171 AT1G18150.3 33.799 358 151 13 16 291 88 441 1.72e-48 170
MsaG014171 AT1G18150.2 33.799 358 151 13 16 291 88 441 1.72e-48 170
MsaG014171 AT1G18150.1 33.799 358 151 13 16 291 88 441 1.72e-48 170
MsaG014171 AT2G42880.1 36.228 334 131 9 38 291 31 362 3.86e-48 169
MsaG014171 AT5G19010.1 33.524 349 148 11 24 291 17 362 3.19e-46 164
MsaG014171 AT3G18040.5 43.564 202 88 4 20 195 6 207 1.50e-45 161
MsaG014171 AT3G18040.1 43.564 202 88 4 20 195 11 212 1.65e-45 161
MsaG014171 AT3G18040.4 43.564 202 88 4 20 195 120 321 5.57e-45 161
MsaG014171 AT3G18040.3 43.564 202 88 4 20 195 120 321 9.76e-45 161
MsaG014171 AT3G48750.1 31.525 295 124 8 31 252 3 292 1.64e-35 130
MsaG014171 AT1G73690.1 29.286 280 123 7 38 247 17 291 3.71e-28 112
MsaG014171 AT4G13020.4 30.375 293 118 12 31 248 3 284 2.50e-27 110
MsaG014171 AT4G13020.1 30.375 293 118 12 31 248 3 284 2.57e-27 110
MsaG014171 AT4G13020.6 30.375 293 118 12 31 248 3 284 2.75e-27 110
MsaG014171 AT4G13020.7 30.375 293 118 12 31 248 3 284 2.96e-27 109
MsaG014171 AT4G13020.2 30.068 296 121 12 28 248 8 292 4.53e-27 110
MsaG014171 AT4G13020.3 30.068 296 121 12 28 248 8 292 4.57e-27 110
MsaG014171 AT1G18040.1 28.571 280 125 7 38 247 18 292 1.18e-26 108
MsaG014171 AT2G38620.2 29.582 311 131 11 31 255 3 311 2.03e-26 106
MsaG014171 AT1G76540.1 29.932 294 131 7 32 250 14 307 4.90e-26 105
MsaG014171 AT5G10270.1 29.932 294 122 8 38 247 32 325 6.69e-26 107
MsaG014171 AT5G64960.1 30.169 295 120 8 38 247 32 325 2.61e-25 105
MsaG014171 AT1G67580.1 35.106 188 96 3 31 195 405 589 7.74e-25 104
MsaG014171 AT1G67580.2 35.106 188 96 3 31 195 405 589 7.74e-25 104
MsaG014171 AT4G13020.8 29.097 299 123 13 31 248 3 293 1.08e-24 102
MsaG014171 AT4G13020.5 29.097 299 123 13 31 248 3 293 1.08e-24 103
MsaG014171 AT1G66750.1 28.723 282 126 7 38 249 19 295 2.15e-24 101
MsaG014171 AT5G63370.9 33.333 192 99 4 31 195 162 351 2.78e-24 102
MsaG014171 AT5G63370.2 33.333 192 99 4 31 195 162 351 3.80e-24 102
MsaG014171 AT5G63370.3 33.333 192 99 4 31 195 162 351 3.80e-24 102
MsaG014171 AT5G63370.5 33.333 192 99 4 31 195 296 485 6.77e-24 101
MsaG014171 AT5G63370.10 33.333 192 99 4 31 195 296 485 6.77e-24 101
MsaG014171 AT5G63370.7 33.333 192 99 4 31 195 296 485 7.25e-24 101
MsaG014171 AT5G63370.8 33.333 192 99 4 31 195 296 485 7.25e-24 101
MsaG014171 AT5G63370.4 33.333 192 99 4 31 195 296 485 7.25e-24 101
MsaG014171 AT5G63370.6 33.333 192 99 4 31 195 296 485 7.25e-24 101
MsaG014171 AT5G63370.1 33.333 192 99 4 31 195 296 485 7.25e-24 101
MsaG014171 AT5G45430.1 29.825 285 128 10 31 247 3 283 1.39e-23 100
MsaG014171 AT5G45430.2 29.825 285 128 10 31 247 3 283 1.43e-23 100
MsaG014171 AT2G38620.3 32.843 204 96 6 31 195 3 204 5.32e-22 93.2
MsaG014171 AT2G38620.1 32.843 204 96 6 31 195 3 204 5.32e-22 93.2
MsaG014171 AT1G71530.2 34.673 199 101 6 38 210 153 348 1.24e-20 92.0
MsaG014171 AT3G18040.2 41.935 124 46 4 98 195 1 124 1.25e-20 91.7
MsaG014171 AT1G71530.3 34.171 199 102 5 38 210 153 348 1.77e-20 91.3
MsaG014171 AT1G71530.4 34.171 199 102 5 38 210 153 348 1.95e-20 90.5
MsaG014171 AT1G71530.1 34.171 199 102 5 38 210 153 348 2.24e-20 91.7
MsaG014171 AT3G61160.1 28.289 304 127 12 27 250 97 389 4.66e-20 90.1
MsaG014171 AT3G61160.4 27.961 304 128 12 27 250 97 389 5.49e-20 89.7
MsaG014171 AT3G61160.2 27.961 304 128 12 27 250 104 396 6.33e-20 89.7
MsaG014171 AT5G63610.1 32.836 201 94 7 31 195 24 219 7.70e-20 89.7
MsaG014171 AT5G44290.7 30.332 211 114 6 30 212 135 340 8.94e-20 89.7
MsaG014171 AT5G44290.6 30.332 211 114 6 30 212 135 340 1.44e-19 89.4
MsaG014171 AT5G44290.2 30.332 211 114 6 30 212 135 340 1.87e-19 89.0
MsaG014171 AT5G44290.5 30.332 211 114 6 30 212 135 340 1.87e-19 89.0
MsaG014171 AT5G44290.4 30.332 211 114 6 30 212 135 340 1.87e-19 89.0
MsaG014171 AT5G44290.1 30.332 211 114 6 30 212 135 340 1.87e-19 89.0
MsaG014171 AT5G44290.3 30.332 211 114 6 30 212 135 340 1.87e-19 89.0
MsaG014171 AT4G18710.2 32.124 193 96 5 31 195 33 218 2.24e-19 86.3
MsaG014171 AT4G18710.1 33.862 189 84 7 38 195 46 224 2.41e-19 87.4
MsaG014171 AT3G05840.2 32.258 186 91 5 38 195 79 257 6.94e-19 86.7
MsaG014171 AT3G05840.1 32.258 186 91 5 38 195 79 257 6.94e-19 86.7
MsaG014171 AT1G33770.1 34.043 188 97 4 32 195 141 325 8.44e-19 87.0
MsaG014171 AT5G50860.2 33.854 192 96 8 30 195 112 298 1.25e-18 86.3
MsaG014171 AT5G26751.1 32.258 186 91 5 38 195 75 253 1.34e-18 85.5
MsaG014171 AT3G61160.3 31.658 199 97 6 27 195 97 286 1.46e-18 85.1
MsaG014171 AT5G50860.1 33.854 192 96 8 30 195 112 298 1.65e-18 85.9
MsaG014171 AT2G38620.4 27.473 273 124 9 31 255 3 249 1.73e-18 83.2
MsaG014171 AT3G61160.5 31.658 199 97 6 27 195 97 286 1.81e-18 85.1
MsaG014171 AT5G64960.2 33.758 157 69 4 74 195 15 171 2.08e-18 85.5
MsaG014171 AT3G61160.6 31.658 199 97 6 27 195 104 293 2.38e-18 84.7
MsaG014171 AT1G57870.1 31.915 188 89 6 38 195 88 266 7.37e-18 83.6
MsaG014171 AT1G57870.4 31.915 188 89 6 38 195 88 266 7.37e-18 83.6
MsaG014171 AT1G57870.2 31.915 188 89 6 38 195 88 266 7.37e-18 83.6
MsaG014171 AT1G57870.3 31.915 188 89 6 38 195 88 266 8.67e-18 83.6
MsaG014171 AT1G18670.3 32.461 191 97 7 32 195 131 316 1.14e-17 83.6
MsaG014171 AT1G18670.2 32.461 191 97 7 32 195 131 316 1.15e-17 83.6
MsaG014171 AT1G53050.2 33.511 188 86 8 38 195 140 318 1.22e-17 83.6
MsaG014171 AT1G53050.1 33.511 188 86 8 38 195 140 318 1.22e-17 83.6
MsaG014171 AT1G09840.3 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.7 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.10 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.6 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.4 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.1 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.9 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.5 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.8 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G09840.2 31.383 188 90 6 38 195 89 267 1.29e-17 82.8
MsaG014171 AT1G18670.1 32.461 191 97 7 32 195 131 316 1.32e-17 83.6
MsaG014171 AT1G06390.2 31.915 188 89 7 38 195 76 254 1.76e-17 82.4
MsaG014171 AT1G06390.1 31.915 188 89 7 38 195 76 254 1.76e-17 82.4
MsaG014171 AT2G30980.1 30.645 186 94 5 38 195 78 256 4.58e-17 81.3
MsaG014171 AT5G14640.1 25.260 289 133 9 38 250 80 361 4.76e-17 81.3
MsaG014171 AT5G14640.2 25.260 289 133 9 38 250 80 361 4.76e-17 81.3
MsaG014171 AT3G01085.1 31.522 184 95 5 38 195 121 299 4.74e-16 79.0
MsaG014171 AT3G01085.2 31.522 184 95 5 38 195 121 299 4.74e-16 79.0
MsaG014171 AT3G01085.3 31.522 184 95 5 38 195 121 299 5.21e-16 78.6
MsaG014171 AT5G25110.1 29.329 283 150 11 28 270 39 311 7.18e-16 78.2
MsaG014171 AT1G57700.1 33.152 184 92 5 38 195 152 330 7.68e-15 75.1
MsaG014171 AT5G39440.1 27.881 269 138 11 25 247 12 270 1.29e-14 74.3
MsaG014171 AT5G35410.2 30.890 191 99 6 31 195 10 193 1.08e-12 68.2
MsaG014171 AT5G45820.1 34.104 173 94 5 31 183 11 183 1.15e-12 68.2
MsaG014171 AT5G35410.1 30.890 191 99 6 31 195 10 193 1.54e-12 67.8
MsaG014171 AT4G18700.1 33.523 176 97 6 28 183 22 197 1.97e-12 67.8
MsaG014171 AT1G09840.11 52.459 61 27 2 136 195 81 140 3.61e-12 66.2
MsaG014171 AT5G45810.1 32.386 176 99 6 28 183 24 199 3.11e-11 63.9

Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCACATTGATGAAAAT+TGG 0.148851 3:-68507512 MsaT014171.1:CDS
GATTTGAAGATATGTGATTT+TGG 0.217846 3:-68508006 MsaT014171.1:CDS
TATCCTTAAAACTTGTTCTT+TGG 0.250428 3:+68508770 None:intergenic
ATCGATGGAGGTTCTGTAAT+TGG 0.272765 3:+68507891 None:intergenic
CTACTTGGTCTATGAACTTA+TGG 0.272871 3:-68508746 MsaT014171.1:CDS
CTCATTAGTATCCATATTGA+TGG 0.286061 3:+68508927 None:intergenic
GTGATGCTCTGAGAACTTTA+AGG 0.294556 3:-68508861 MsaT014171.1:CDS
TGTAAGAACTCTAGGGCTAA+TGG 0.298992 3:+68507653 None:intergenic
ATTGGGATAACAAGATGATT+AGG 0.321414 3:-68507494 MsaT014171.1:CDS
AGGAATAATGACAACTTTAG+AGG 0.324536 3:-68509079 None:intergenic
TTAAAACTTGTTCTTTGGTC+TGG 0.350735 3:+68508775 None:intergenic
TTGCATAGATCAGCCATATA+TGG 0.351435 3:+68507573 None:intergenic
CGAGCAGATTCTCAGGCTTC+AGG 0.357127 3:+68508043 None:intergenic
AAGTGTGTCCCCTCTGTATA+AGG 0.363602 3:+68507701 None:intergenic
AGGAACCGACGATCAGAAAA+AGG 0.365050 3:-68509059 MsaT014171.1:CDS
TCTTCACATTGATGAAAATT+GGG 0.390420 3:-68507511 MsaT014171.1:CDS
CCATATGTTCCTCGGCCAAT+AGG 0.397748 3:+68508964 None:intergenic
AGCACTCCAACATCCATATA+TGG 0.414137 3:-68507586 MsaT014171.1:CDS
CGAGCTCCAGAGCTTCTATT+AGG 0.418427 3:-68507919 MsaT014171.1:CDS
TTGGGATAACAAGATGATTA+GGG 0.426294 3:-68507493 MsaT014171.1:CDS
CCTCGGCCAATAGGCTTGAT+TGG 0.431230 3:+68508973 None:intergenic
CCTATTGGCCGAGGAACATA+TGG 0.433281 3:-68508964 MsaT014171.1:CDS
GCATTGACAAAAGCAGCTTC+AGG 0.435785 3:+68507438 None:intergenic
TAACCGCCCTCCTCAAGTTC+CGG 0.448485 3:-68507538 MsaT014171.1:CDS
GTATAACAATGCTTTCTCCT+TGG 0.462626 3:+68509036 None:intergenic
GCTCGGGAAAATCAAGTTGA+TGG 0.468796 3:-68507979 MsaT014171.1:CDS
TGAAGTTACTTAGACATGTT+CGG 0.472113 3:-68508834 MsaT014171.1:CDS
GCGTTGACGAGCAGATTCTC+AGG 0.472568 3:+68508036 None:intergenic
TATCGTCCAATCAAGCCTAT+TGG 0.475033 3:-68508979 MsaT014171.1:CDS
GCACATCCTAATAGAAGCTC+TGG 0.477103 3:+68507913 None:intergenic
GGTGTGCTCATCCATCAATA+TGG 0.478960 3:-68508938 MsaT014171.1:CDS
TGATGCTCTGAGAACTTTAA+GGG 0.488538 3:-68508860 MsaT014171.1:CDS
TCATCAATGTGAAGATTGAC+CGG 0.493486 3:+68507519 None:intergenic
TATGGATACTAATGAGAAAG+TGG 0.507188 3:-68508920 MsaT014171.1:CDS
AGCAATGTATTTGATGATTG+TGG 0.514065 3:-68508883 MsaT014171.1:CDS
GATCAGCCATATATGGATGT+TGG 0.534012 3:+68507580 None:intergenic
GAAAGCATTGTTATACAATG+TGG 0.539422 3:-68509029 MsaT014171.1:CDS
AGGGCTAATGGATCTGCGTG+TGG 0.550992 3:+68507665 None:intergenic
ACACCACGCCATATGTTCCT+CGG 0.562625 3:+68508956 None:intergenic
CCAATCAAGCCTATTGGCCG+AGG 0.564493 3:-68508973 MsaT014171.1:CDS
AAAGCATTGTTATACAATGT+GGG 0.566792 3:-68509028 MsaT014171.1:CDS
CTGATCTATGCAATGATCAA+TGG 0.575443 3:-68507563 MsaT014171.1:CDS
GGGCTAATGGATCTGCGTGT+GGG 0.581224 3:+68507666 None:intergenic
CATATCACTTCCTTATACAG+AGG 0.581429 3:-68507711 MsaT014171.1:CDS
CTGAGTATGTTGTCACGCGC+TGG 0.586534 3:-68507945 MsaT014171.1:CDS
TGAAGATTGACCGGAACTTG+AGG 0.588250 3:+68507528 None:intergenic
ATATCACTTCCTTATACAGA+GGG 0.594658 3:-68507710 MsaT014171.1:CDS
AGATTGACCGGAACTTGAGG+AGG 0.600295 3:+68507531 None:intergenic
TACAGAACCTCCATCGATGT+GGG 0.619193 3:-68507886 MsaT014171.1:intron
AGATGATTAGGGAAATGATG+TGG 0.624256 3:-68507482 MsaT014171.1:CDS
TTACAGAACCTCCATCGATG+TGG 0.641595 3:-68507887 MsaT014171.1:CDS
ATCCTACGGACCCACATCGA+TGG 0.642034 3:+68507876 None:intergenic
GATTGACCGGAACTTGAGGA+GGG 0.657411 3:+68507532 None:intergenic
TGACCGGAACTTGAGGAGGG+CGG 0.664059 3:+68507535 None:intergenic
CTACGGACCCACATCGATGG+AGG 0.666253 3:+68507879 None:intergenic
TGGCCGAGGAACATATGGCG+TGG 0.681753 3:-68508959 MsaT014171.1:CDS
CAGATTCTCAGGCTTCAGGT+CGG 0.686227 3:+68508047 None:intergenic
TATCACTTCCTTATACAGAG+GGG 0.765984 3:-68507709 MsaT014171.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 68507434 68509094 68507434 ID=MsaG014171
Chr3 mRNA 68507434 68509094 68507434 ID=MsaT014171.1;Parent=MsaG014171
Chr3 exon 68507434 68507741 68507434 ID=MsaT014171.1.exon4;Parent=MsaT014171.1
Chr3 CDS 68507434 68507741 68507434 ID=cds.MsaT014171.1;Parent=MsaT014171.1
Chr3 exon 68507887 68508103 68507887 ID=MsaT014171.1.exon3;Parent=MsaT014171.1
Chr3 CDS 68507887 68508103 68507887 ID=cds.MsaT014171.1;Parent=MsaT014171.1
Chr3 exon 68508672 68508676 68508672 ID=MsaT014171.1.exon2;Parent=MsaT014171.1
Chr3 CDS 68508672 68508676 68508672 ID=cds.MsaT014171.1;Parent=MsaT014171.1
Chr3 exon 68508731 68509094 68508731 ID=MsaT014171.1.exon1;Parent=MsaT014171.1
Chr3 CDS 68508731 68509094 68508731 ID=cds.MsaT014171.1;Parent=MsaT014171.1
Gene Sequence

>MsaT014171.1

ATGACAACTTTAGAGGAACCGACGATCAGAAAAAGGCCAAGGAGAAAGCATTGTTATACAATGTGGGAAACATTGTTTGATATTCATACAAAGTATCGTCCAATCAAGCCTATTGGCCGAGGAACATATGGCGTGGTGTGCTCATCCATCAATATGGATACTAATGAGAAAGTGGCAATCAAGAAGATTAGCAATGTATTTGATGATTGTGGTGATGCTCTGAGAACTTTAAGGGAGATGAAGTTACTTAGACATGTTCGGCATGAGAATGTGATTGCTCTGAAAGATGTTATGATACCAGACCAAAGAACAAGTTTTAAGGATATCTACTTGGTCTATGAACTTATGGATAAAGATCTTCATCTTCAGGTCTTAATCATCTTCATTCTGCAAATATTCTTCACCGACCTGAAGCCTGAGAATCTGCTCGTCAACGCAAATTGTGATTTGAAGATATGTGATTTTGGGCTTGCTCGGGAAAATCAAGTTGATGGTGAGAATATGACTGAGTATGTTGTCACGCGCTGGTATCGAGCTCCAGAGCTTCTATTAGGATGTGCCAATTACAGAACCTCCATCGATGTGGGCATTCATCATATCACTTCCTTATACAGAGGGGACACACTTCTCTCAGCTATACCCACACGCAGATCCATTAGCCCTAGAGTTCTTACAAAAATGCTTGTGTTTGATCCAACTAAAAGAATTACTGCATCAGAAGCACTCCAACATCCATATATGGCTGATCTATGCAATGATCAATGGCGTAACCGCCCTCCTCAAGTTCCGGTCAATCTTCACATTGATGAAAATTGGGATAACAAGATGATTAGGGAAATGATGTGGAATGAGATGCTTCATTATCATCCTGAAGCTGCTTTTGTCAATGCATAG

Protein sequence

>MsaT014171.1

MTTLEEPTIRKRPRRKHCYTMWETLFDIHTKYRPIKPIGRGTYGVVCSSINMDTNEKVAIKKISNVFDDCGDALRTLREMKLLRHVRHENVIALKDVMIPDQRTSFKDIYLVYELMDKDLHLQVLIIFILQIFFTDLKPENLLVNANCDLKICDFGLARENQVDGENMTEYVVTRWYRAPELLLGCANYRTSIDVGIHHITSLYRGDTLLSAIPTRRSISPRVLTKMLVFDPTKRITASEALQHPYMADLCNDQWRNRPPQVPVNLHIDENWDNKMIREMMWNEMLHYHPEAAFVNA*