AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG014180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG014180 MtrunA17_Chr8g0378831 61.860 215 40 1 1 173 1 215 2.12e-91 271
MsaG014180 MtrunA17_Chr3g0141871 60.930 215 42 1 1 173 1 215 1.57e-88 263
MsaG014180 MtrunA17_Chr3g0102571 49.049 263 44 2 1 173 1 263 6.64e-77 235
MsaG014180 MtrunA17_Chr5g0397261 48.485 198 58 3 19 173 27 223 1.24e-60 192
MsaG014180 MtrunA17_Chr7g0248461 48.990 198 57 3 19 173 24 220 3.54e-60 191
MsaG014180 MtrunA17_Chr8g0348481 47.596 208 63 4 11 173 13 219 9.20e-60 190
MsaG014180 MtrunA17_Chr8g0387401 47.143 210 65 4 9 173 26 234 4.02e-59 189
MsaG014180 MtrunA17_Chr4g0045841 47.980 198 59 3 19 173 41 237 6.40e-58 186
MsaG014180 MtrunA17_Chr4g0030231 47.475 198 60 3 19 173 26 222 1.74e-57 184
MsaG014180 MtrunA17_Chr4g0030151 46.465 198 62 3 19 173 25 221 3.74e-55 178
MsaG014180 MtrunA17_Chr3g0102601 65.741 108 20 2 66 173 11 101 7.13e-43 143
MsaG014180 MtrunA17_Chr8g0359091 41.935 186 60 4 31 171 25 207 2.92e-42 148
MsaG014180 MtrunA17_Chr4g0065851 43.820 178 55 3 30 162 23 200 1.70e-41 146
MsaG014180 MtrunA17_Chr2g0287271 43.258 178 56 3 30 162 23 200 1.80e-41 146
MsaG014180 MtrunA17_Chr3g0096631 42.938 177 56 2 31 162 24 200 1.85e-41 146
MsaG014180 MtrunA17_Chr8g0392811 40.500 200 70 4 8 162 97 292 2.33e-41 146
MsaG014180 MtrunA17_Chr5g0443351 40.678 177 60 2 31 162 21 197 4.23e-40 141
MsaG014180 MtrunA17_Chr6g0482681 42.135 178 58 3 30 162 87 264 8.59e-40 142
MsaG014180 MtrunA17_Chr2g0314321 40.113 177 61 2 31 162 24 200 1.01e-39 142
MsaG014180 MtrunA17_Chr4g0030241 69.620 79 23 1 95 173 6 83 1.90e-34 119
MsaG014180 MtrunA17_Chr4g0051261 35.519 183 78 3 31 173 3 185 2.97e-30 112
MsaG014180 MtrunA17_Chr4g0057791 35.484 186 78 2 30 173 216 401 2.68e-29 112
MsaG014180 MtrunA17_Chr2g0293491 35.519 183 78 3 31 173 3 185 5.31e-29 108
MsaG014180 MtrunA17_Chr1g0201571 33.880 183 80 3 32 173 126 308 1.41e-27 108
MsaG014180 MtrunA17_Chr8g0369451 33.702 181 79 5 31 173 3 180 7.19e-27 105
MsaG014180 MtrunA17_Chr8g0339221 34.078 179 79 4 32 173 4 180 7.78e-27 105
MsaG014180 MtrunA17_Chr5g0409421 34.254 181 78 5 31 173 3 180 1.37e-26 104
MsaG014180 MtrunA17_Chr6g0483151 33.514 185 85 2 27 173 9 193 1.87e-26 103
MsaG014180 MtrunA17_Chr8g0378851 66.154 65 22 0 1 65 1 65 2.30e-26 96.7
MsaG014180 MtrunA17_Chr8g0377071 33.173 208 94 5 6 173 364 566 5.71e-26 103
MsaG014180 MtrunA17_Chr8g0378861 70.175 57 17 0 74 130 1 57 5.81e-25 91.7
MsaG014180 MtrunA17_Chr5g0396361 33.690 187 75 4 32 173 140 322 9.27e-25 100
MsaG014180 MtrunA17_Chr4g0002001 32.500 200 78 3 31 173 3 202 1.76e-24 97.1
MsaG014180 MtrunA17_Chr6g0453711 32.787 183 82 3 32 173 110 292 1.79e-24 99.4
MsaG014180 MtrunA17_Chr3g0122781 33.880 183 81 2 31 173 415 597 3.05e-24 98.6
MsaG014180 MtrunA17_Chr3g0102611 64.615 65 23 0 1 65 1 65 3.06e-24 90.9
MsaG014180 MtrunA17_Chr3g0102581 48.246 114 16 1 28 98 2 115 5.30e-24 94.0
MsaG014180 MtrunA17_Chr8g0383451 34.463 177 75 3 38 173 4 180 5.38e-24 97.4
MsaG014180 MtrunA17_Chr4g0061141 31.694 183 84 3 32 173 105 287 7.60e-24 97.4
MsaG014180 MtrunA17_Chr3g0099951 32.258 186 80 4 31 173 13 195 2.77e-23 95.1
MsaG014180 MtrunA17_Chr7g0218071 30.601 183 86 3 32 173 120 302 5.67e-23 95.1
MsaG014180 MtrunA17_Chr2g0317501 41.803 122 65 3 56 173 197 316 1.12e-22 94.4
MsaG014180 MtrunA17_Chr2g0324461 44.355 124 59 3 56 173 204 323 1.26e-22 94.0
MsaG014180 MtrunA17_Chr4g0040141 42.742 124 61 3 56 173 192 311 3.21e-22 92.8
MsaG014180 MtrunA17_Chr3g0131861 42.742 124 61 3 56 173 160 279 5.97e-22 92.0
MsaG014180 MtrunA17_Chr1g0187371 32.632 190 80 4 32 173 18 207 2.01e-21 89.0
MsaG014180 MtrunA17_Chr7g0273601 33.155 187 76 5 32 173 107 289 2.94e-21 90.1
MsaG014180 MtrunA17_Chr3g0093571 31.313 198 79 4 32 173 25 221 3.29e-21 89.7
MsaG014180 MtrunA17_Chr8g0385971 40.833 120 69 2 56 173 153 272 7.33e-21 89.0
MsaG014180 MtrunA17_Chr4g0066691 39.167 120 71 2 56 173 167 286 2.68e-20 87.4
MsaG014180 MtrunA17_Chr3g0093391 30.808 198 80 4 32 173 23 219 2.72e-20 87.0
MsaG014180 MtrunA17_Chr3g0130781 31.633 196 81 5 31 173 17 212 4.86e-20 86.3
MsaG014180 MtrunA17_Chr1g0191221 39.167 120 71 2 56 173 185 304 8.44e-20 85.9
MsaG014180 MtrunA17_Chr2g0286421 39.516 124 65 3 56 173 165 284 1.02e-19 85.5
MsaG014180 MtrunA17_Chr8g0358921 31.892 185 81 4 34 173 49 233 2.16e-19 84.0
MsaG014180 MtrunA17_Chr8g0350311 33.708 178 75 5 38 173 145 321 6.36e-19 83.2
MsaG014180 MtrunA17_Chr7g0246591 32.778 180 74 5 38 173 147 323 4.54e-18 80.9
MsaG014180 MtrunA17_Chr1g0194201 30.899 178 80 5 38 173 81 257 1.61e-17 79.0
MsaG014180 MtrunA17_Chr2g0284091 30.337 178 81 5 38 173 46 222 1.96e-17 78.6
MsaG014180 MtrunA17_Chr1g0193081 30.899 178 80 5 38 173 81 257 2.64e-17 78.6
MsaG014180 MtrunA17_Chr2g0320011 31.111 180 77 5 38 173 94 270 9.14e-17 77.0
MsaG014180 MtrunA17_Chr1g0170551 28.235 170 85 2 31 163 6 175 1.84e-16 76.3
MsaG014180 MtrunA17_Chr2g0277011 29.775 178 82 5 38 173 96 272 2.84e-15 72.8
MsaG014180 MtrunA17_Chr8g0346071 31.395 172 79 3 31 163 16 187 5.02e-15 72.0
MsaG014180 MtrunA17_Chr4g0038501 28.495 186 88 6 19 163 10 191 1.66e-14 70.9
MsaG014180 MtrunA17_Chr8g0346081 30.814 172 80 3 31 163 16 187 2.56e-14 70.1
MsaG014180 MtrunA17_Chr2g0317001 26.554 177 93 3 30 169 13 189 2.60e-14 70.1
MsaG014180 MtrunA17_Chr4g0038091 28.495 186 88 6 19 163 10 191 4.11e-14 69.7
MsaG014180 MtrunA17_Chr3g0107051 28.889 180 88 3 24 163 13 192 1.07e-13 68.2
MsaG014180 MtrunA17_Chr1g0190131 25.414 181 91 4 28 167 5 182 1.10e-13 67.4
MsaG014180 MtrunA17_Chr4g0063881 26.596 188 98 3 31 179 10 196 1.34e-13 67.8
MsaG014180 MtrunA17_Chr2g0286501 28.571 189 92 4 18 163 30 218 1.99e-13 67.8
MsaG014180 MtrunA17_Chr4g0055451 29.101 189 95 5 28 179 1 187 3.28e-13 66.6
MsaG014180 MtrunA17_Chr6g0486031 31.034 145 66 2 27 139 15 157 3.87e-13 66.6
MsaG014180 MtrunA17_Chr6g0479211 33.654 104 68 1 59 161 121 224 6.38e-13 65.5
MsaG014180 MtrunA17_Chr8g0374571 28.495 186 94 6 31 179 22 205 8.60e-13 65.5
MsaG014180 MtrunA17_Chr1g0205071 45.000 80 38 1 100 173 208 287 8.74e-13 65.5
MsaG014180 MtrunA17_Chr2g0284011 28.000 175 82 5 31 163 11 183 1.44e-12 64.7
MsaG014180 MtrunA17_Chr3g0129721 30.636 173 78 4 32 163 25 196 2.33e-12 63.5
MsaG014180 MtrunA17_Chr4g0072831 31.298 131 72 2 31 143 9 139 3.24e-12 63.5
MsaG014180 MtrunA17_Chr1g0211611 50.000 64 27 2 102 163 408 468 4.14e-12 63.5
MsaG014180 MtrunA17_Chr7g0274941 26.486 185 92 5 31 173 15 197 4.88e-12 62.8
MsaG014180 MtrunA17_Chr3g0132671 30.631 111 75 2 64 173 119 228 5.59e-12 63.2
MsaG014180 MtrunA17_Chr8g0354651 32.374 139 85 4 31 161 140 277 7.39e-12 62.8
MsaG014180 MtrunA17_Chr4g0018201 26.144 153 74 2 32 145 759 911 9.11e-12 62.8
MsaG014180 MtrunA17_Chr5g0432491 30.460 174 80 5 31 163 22 195 9.27e-12 62.4
MsaG014180 MtrunA17_Chr8g0380661 29.891 184 91 6 31 179 3 183 9.94e-12 62.0
MsaG014180 MtrunA17_Chr5g0428981 26.144 153 74 2 32 145 763 915 1.13e-11 62.4
MsaG014180 MtrunA17_Chr5g0406251 50.000 64 27 2 102 163 402 462 1.36e-11 62.0
MsaG014180 MtrunA17_Chr4g0013131 28.814 177 84 5 28 163 8 183 1.49e-11 62.0
MsaG014180 MtrunA17_Chr6g0453671 32.323 99 65 2 66 163 91 188 1.51e-11 62.0
MsaG014180 MtrunA17_Chr4g0001331 28.205 195 93 6 28 179 16 206 1.63e-11 62.0
MsaG014180 MtrunA17_Chr5g0403721 42.045 88 46 3 78 162 69 154 1.86e-11 61.6
MsaG014180 MtrunA17_Chr5g0394681 43.750 80 39 1 100 173 216 295 2.09e-11 61.6
MsaG014180 MtrunA17_Chr8g0384301 22.043 186 101 3 30 173 297 480 2.96e-11 61.2
MsaG014180 MtrunA17_Chr7g0244521 27.429 175 83 5 31 163 11 183 4.91e-11 60.5
MsaG014180 MtrunA17_Chr6g0453681 28.070 171 83 4 32 163 19 188 6.70e-11 60.1
MsaG014180 MtrunA17_Chr6g0468751 28.070 171 83 4 32 163 19 188 6.75e-11 60.1
MsaG014180 MtrunA17_Chr8g0341251 44.286 70 34 2 97 161 130 199 7.07e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG014180 AT2G18170.1 60.930 215 42 1 1 173 1 215 2.65e-89 266
MsaG014180 AT1G10210.2 59.535 215 45 1 1 173 1 215 6.76e-88 262
MsaG014180 AT1G10210.3 59.535 215 45 1 1 173 1 215 6.76e-88 262
MsaG014180 AT1G10210.1 59.535 215 45 1 1 173 1 215 6.76e-88 262
MsaG014180 AT1G59580.2 59.070 215 46 1 1 173 1 215 1.02e-87 262
MsaG014180 AT1G59580.1 59.070 215 46 1 1 173 1 215 1.02e-87 262
MsaG014180 AT4G36450.1 58.605 215 44 2 1 173 1 212 2.25e-83 250
MsaG014180 AT1G07880.1 50.505 198 54 3 19 173 19 215 5.06e-62 192
MsaG014180 AT1G07880.2 52.083 192 48 3 25 173 25 215 6.46e-61 193
MsaG014180 AT4G01370.1 48.485 198 58 3 19 173 29 225 7.88e-60 191
MsaG014180 AT2G43790.1 48.485 198 58 3 19 173 49 245 6.02e-59 189
MsaG014180 AT1G01560.4 47.475 198 60 3 19 173 26 222 7.85e-57 180
MsaG014180 AT1G01560.1 47.475 198 60 3 19 173 26 222 7.85e-57 180
MsaG014180 AT4G11330.1 46.569 204 63 4 15 173 23 225 1.52e-56 182
MsaG014180 AT3G45640.1 47.980 198 59 3 19 173 24 220 1.98e-56 182
MsaG014180 AT1G01560.3 47.475 198 60 3 19 173 26 222 2.34e-56 181
MsaG014180 AT1G01560.2 47.475 198 60 3 19 173 26 222 4.33e-56 181
MsaG014180 AT2G46070.2 44.118 204 68 4 15 173 21 223 1.05e-51 168
MsaG014180 AT2G46070.1 44.444 198 66 3 19 173 27 223 4.55e-51 168
MsaG014180 AT3G59790.1 44.949 198 65 3 19 173 46 242 6.81e-51 168
MsaG014180 AT2G46070.3 44.444 198 66 3 19 173 61 257 8.06e-51 168
MsaG014180 AT3G14720.2 40.741 189 66 4 31 173 24 212 1.17e-42 147
MsaG014180 AT3G14720.3 40.741 189 66 4 31 173 24 212 1.17e-42 147
MsaG014180 AT3G14720.1 40.741 189 66 4 31 173 24 212 4.95e-42 148
MsaG014180 AT5G19010.1 43.258 178 56 3 30 162 23 200 2.68e-41 146
MsaG014180 AT2G42880.2 43.503 177 55 3 31 162 24 200 4.65e-41 144
MsaG014180 AT3G18040.5 42.697 178 57 3 30 162 16 193 5.78e-41 144
MsaG014180 AT3G18040.1 42.697 178 57 3 30 162 21 198 5.85e-41 144
MsaG014180 AT1G53510.1 41.808 177 58 3 31 162 24 200 5.97e-41 145
MsaG014180 AT2G42880.1 43.503 177 55 3 31 162 24 200 1.37e-40 144
MsaG014180 AT3G18040.4 42.697 178 57 3 30 162 130 307 2.13e-40 144
MsaG014180 AT3G18040.3 42.697 178 57 3 30 162 130 307 3.12e-40 144
MsaG014180 AT1G73670.1 42.938 177 56 3 31 162 89 265 4.50e-40 143
MsaG014180 AT1G18150.3 41.808 177 58 3 31 162 103 279 5.53e-40 142
MsaG014180 AT1G18150.2 41.808 177 58 3 31 162 103 279 5.53e-40 142
MsaG014180 AT1G18150.1 41.808 177 58 3 31 162 103 279 5.53e-40 142
MsaG014180 AT2G01450.3 39.326 178 63 2 30 162 14 191 1.79e-36 132
MsaG014180 AT2G01450.1 39.326 178 63 2 30 162 14 191 1.79e-36 132
MsaG014180 AT2G01450.2 39.326 178 63 2 30 162 14 191 1.79e-36 132
MsaG014180 AT2G01450.4 39.326 178 63 2 30 162 14 191 1.79e-36 132
MsaG014180 AT3G18040.2 55.000 100 42 2 66 162 11 110 3.68e-33 122
MsaG014180 AT2G38620.4 40.972 144 78 2 31 173 3 140 5.86e-30 110
MsaG014180 AT4G13020.6 36.111 180 76 4 31 173 3 180 9.81e-30 112
MsaG014180 AT4G13020.7 36.111 180 76 4 31 173 3 180 1.10e-29 112
MsaG014180 AT4G13020.4 36.111 180 76 4 31 173 3 180 1.11e-29 112
MsaG014180 AT4G13020.1 36.111 180 76 4 31 173 3 180 1.12e-29 113
MsaG014180 AT4G13020.2 36.111 180 76 4 31 173 11 188 1.23e-29 113
MsaG014180 AT4G13020.3 36.111 180 76 4 31 173 11 188 1.24e-29 113
MsaG014180 AT3G48750.1 37.158 183 75 4 31 173 3 185 2.20e-29 110
MsaG014180 AT5G63370.9 34.043 188 79 2 31 173 162 349 1.35e-28 110
MsaG014180 AT5G63370.2 34.043 188 79 2 31 173 162 349 1.90e-28 110
MsaG014180 AT5G63370.3 34.043 188 79 2 31 173 162 349 1.90e-28 110
MsaG014180 AT4G13020.5 34.392 189 76 4 31 173 3 189 2.28e-28 109
MsaG014180 AT4G13020.8 34.392 189 76 4 31 173 3 189 2.97e-28 108
MsaG014180 AT5G63370.7 34.043 188 79 2 31 173 296 483 3.19e-28 110
MsaG014180 AT5G63370.8 34.043 188 79 2 31 173 296 483 3.19e-28 110
MsaG014180 AT5G63370.4 34.043 188 79 2 31 173 296 483 3.19e-28 110
MsaG014180 AT5G63370.6 34.043 188 79 2 31 173 296 483 3.19e-28 110
MsaG014180 AT5G63370.1 34.043 188 79 2 31 173 296 483 3.19e-28 110
MsaG014180 AT5G63370.5 34.043 188 79 2 31 173 296 483 3.23e-28 110
MsaG014180 AT5G63370.10 34.043 188 79 2 31 173 296 483 3.23e-28 110
MsaG014180 AT2G38620.3 32.000 200 79 3 31 173 3 202 2.20e-26 101
MsaG014180 AT2G38620.1 32.000 200 79 3 31 173 3 202 2.20e-26 101
MsaG014180 AT4G19110.1 34.807 181 77 6 31 173 3 180 2.22e-26 104
MsaG014180 AT4G19110.2 34.807 181 77 6 31 173 3 180 2.53e-26 104
MsaG014180 AT2G38620.2 32.000 200 79 3 31 173 3 202 3.57e-26 102
MsaG014180 AT1G67580.1 33.880 183 81 2 31 173 405 587 7.13e-26 103
MsaG014180 AT1G67580.2 33.880 183 81 2 31 173 405 587 7.13e-26 103
MsaG014180 AT1G73690.1 32.432 185 87 2 27 173 6 190 1.70e-25 101
MsaG014180 AT1G18040.1 31.892 185 88 2 27 173 7 191 6.95e-25 99.8
MsaG014180 AT5G45430.2 32.778 180 82 5 31 173 3 180 1.08e-24 100
MsaG014180 AT5G45430.1 32.778 180 82 5 31 173 3 180 1.18e-24 99.8
MsaG014180 AT1G71530.4 34.759 187 73 4 32 173 147 329 2.33e-24 97.8
MsaG014180 AT1G71530.3 34.759 187 73 4 32 173 147 329 4.17e-24 97.8
MsaG014180 AT1G71530.2 34.759 187 73 4 32 173 147 329 4.82e-24 97.8
MsaG014180 AT1G71530.1 34.759 187 73 4 32 173 147 329 6.11e-24 98.2
MsaG014180 AT3G54180.1 31.818 198 80 3 31 173 3 200 7.78e-24 95.5
MsaG014180 AT1G66750.1 32.044 181 85 2 31 173 12 192 2.07e-23 95.1
MsaG014180 AT1G74330.1 30.811 185 85 3 32 173 121 305 6.23e-23 95.5
MsaG014180 AT1G74330.2 30.811 185 85 3 32 173 121 305 7.11e-23 95.1
MsaG014180 AT4G10010.2 32.787 183 82 3 32 173 156 338 7.14e-23 95.1
MsaG014180 AT1G74330.3 30.811 185 85 3 32 173 121 305 7.19e-23 95.1
MsaG014180 AT1G18670.1 30.978 184 85 3 32 173 131 314 8.11e-23 95.1
MsaG014180 AT1G18670.2 30.978 184 85 3 32 173 131 314 8.37e-23 95.1
MsaG014180 AT1G18670.3 30.978 184 85 3 32 173 131 314 8.45e-23 95.1
MsaG014180 AT1G33770.1 33.690 187 75 4 32 173 141 323 9.91e-23 94.7
MsaG014180 AT5G50860.1 33.333 186 81 4 30 173 112 296 1.31e-22 94.4
MsaG014180 AT1G54610.1 42.623 122 64 3 56 173 181 300 1.52e-22 94.0
MsaG014180 AT1G54610.3 42.623 122 64 3 56 173 181 300 1.52e-22 94.0
MsaG014180 AT1G54610.2 42.623 122 64 3 56 173 181 300 1.52e-22 94.0
MsaG014180 AT5G44290.7 33.862 189 76 4 30 173 135 319 1.61e-22 94.0
MsaG014180 AT5G50860.2 33.333 186 81 4 30 173 112 296 1.66e-22 94.0
MsaG014180 AT5G44290.6 33.862 189 76 4 30 173 135 319 1.94e-22 94.0
MsaG014180 AT5G44290.2 33.862 189 76 4 30 173 135 319 2.52e-22 93.6
MsaG014180 AT5G44290.5 33.862 189 76 4 30 173 135 319 2.52e-22 93.6
MsaG014180 AT5G44290.4 33.862 189 76 4 30 173 135 319 2.52e-22 93.6
MsaG014180 AT5G44290.1 33.862 189 76 4 30 173 135 319 2.52e-22 93.6
MsaG014180 AT5G44290.3 33.862 189 76 4 30 173 135 319 2.52e-22 93.6
MsaG014180 AT4G10010.1 41.667 120 68 2 56 173 39 158 3.28e-22 92.8
MsaG014180 AT1G53050.2 41.935 124 62 3 56 173 197 316 4.89e-22 92.8
MsaG014180 AT1G53050.1 41.935 124 62 3 56 173 197 316 4.89e-22 92.8
MsaG014180 AT5G39420.1 31.892 185 81 4 32 173 105 287 6.86e-22 92.4
MsaG014180 AT1G03740.2 32.620 187 77 4 32 173 213 395 1.02e-21 91.7
MsaG014180 AT1G03740.1 32.620 187 77 4 32 173 213 395 1.02e-21 92.0
MsaG014180 AT1G76540.1 31.579 190 82 4 32 173 14 203 1.21e-21 89.7
MsaG014180 AT1G20930.1 31.053 190 83 4 32 173 16 205 1.44e-20 87.0
MsaG014180 AT3G01085.1 31.844 179 81 3 36 173 119 297 1.49e-20 88.6
MsaG014180 AT3G01085.2 31.844 179 81 3 36 173 119 297 1.49e-20 88.6
MsaG014180 AT3G01085.3 31.844 179 81 3 36 173 119 297 1.58e-20 88.6
MsaG014180 AT5G63610.1 30.928 194 83 5 31 173 24 217 6.24e-20 86.3
MsaG014180 AT5G10270.1 30.457 197 82 3 32 173 26 222 1.21e-19 85.9
MsaG014180 AT4G22940.1 32.065 184 75 4 36 173 107 286 1.28e-19 85.5
MsaG014180 AT4G22940.2 32.065 184 75 4 36 173 107 286 1.56e-19 85.5
MsaG014180 AT5G64960.1 30.457 197 82 3 32 173 26 222 1.72e-19 85.1
MsaG014180 AT4G19110.3 40.179 112 61 5 65 173 16 124 1.85e-19 84.7
MsaG014180 AT5G64960.2 35.115 131 83 2 45 173 39 169 2.98e-19 84.3
MsaG014180 AT3G05050.3 37.500 120 73 2 56 173 201 320 3.58e-19 84.3
MsaG014180 AT3G05050.2 37.500 120 73 2 56 173 201 320 3.58e-19 84.3
MsaG014180 AT3G05050.1 37.500 120 73 2 56 173 201 320 3.58e-19 84.3
MsaG014180 AT1G09600.1 33.514 185 78 4 32 173 163 345 4.89e-19 84.0
MsaG014180 AT1G57700.1 33.690 187 75 5 32 173 146 328 9.94e-18 80.5
MsaG014180 AT5G26751.1 30.899 178 80 5 38 173 75 251 5.27e-17 77.8
MsaG014180 AT3G05840.2 30.899 178 80 5 38 173 79 255 6.31e-17 77.8
MsaG014180 AT3G05840.1 30.899 178 80 5 38 173 79 255 6.31e-17 77.8
MsaG014180 AT2G30980.1 30.899 178 80 5 38 173 78 254 1.03e-16 77.0
MsaG014180 AT1G06390.2 29.775 178 82 5 38 173 76 252 6.15e-16 74.7
MsaG014180 AT1G06390.1 29.775 178 82 5 38 173 76 252 6.15e-16 74.7
MsaG014180 AT3G61160.3 30.337 178 81 5 38 173 108 284 1.07e-15 73.9
MsaG014180 AT3G61160.5 30.337 178 81 5 38 173 108 284 1.26e-15 73.9
MsaG014180 AT3G61160.6 30.337 178 81 5 38 173 115 291 1.32e-15 73.6
MsaG014180 AT1G50240.3 27.811 169 85 2 32 163 6 174 1.37e-15 74.3
MsaG014180 AT1G50240.2 27.811 169 85 2 32 163 6 174 1.37e-15 74.3
MsaG014180 AT3G61160.4 30.337 178 81 5 38 173 108 284 1.50e-15 73.9
MsaG014180 AT3G61160.1 30.337 178 81 5 38 173 108 284 1.51e-15 73.9
MsaG014180 AT3G61160.2 30.337 178 81 5 38 173 115 291 1.79e-15 73.6
MsaG014180 AT5G14640.1 29.213 178 83 5 38 173 80 256 3.05e-15 72.8
MsaG014180 AT5G14640.2 29.213 178 83 5 38 173 80 256 3.05e-15 72.8
MsaG014180 AT4G00720.1 31.844 179 77 6 38 173 144 320 3.56e-15 72.8
MsaG014180 AT4G24400.1 28.191 188 95 3 31 179 8 194 1.51e-14 70.9
MsaG014180 AT4G24400.2 28.191 188 95 3 31 179 8 194 1.58e-14 70.9
MsaG014180 AT5G35410.2 27.128 188 97 3 31 179 10 196 3.38e-13 67.0
MsaG014180 AT5G35410.1 27.128 188 97 3 31 179 10 196 3.87e-13 67.0
MsaG014180 AT1G18350.1 29.375 160 77 3 38 161 51 210 3.92e-13 66.2
MsaG014180 AT3G01090.2 29.240 171 81 4 32 163 42 211 5.92e-13 66.6
MsaG014180 AT2G38490.1 38.462 117 65 5 67 179 101 214 6.04e-13 66.2
MsaG014180 AT1G78290.3 28.495 186 94 5 31 179 3 186 6.98e-13 65.9
MsaG014180 AT1G78290.2 28.495 186 94 5 31 179 3 186 6.98e-13 65.9
MsaG014180 AT3G01090.3 29.240 171 81 4 32 163 19 188 7.29e-13 66.2
MsaG014180 AT3G01090.1 29.240 171 81 4 32 163 19 188 7.29e-13 66.2
MsaG014180 AT2G37840.1 32.184 174 74 6 32 163 12 183 7.91e-13 66.2
MsaG014180 AT5G25110.1 28.814 177 80 6 30 163 41 214 8.05e-13 66.2
MsaG014180 AT1G30270.1 28.736 174 83 3 31 163 30 203 1.05e-12 65.9
MsaG014180 AT3G07980.1 28.249 177 85 5 28 163 16 191 1.06e-12 65.9
MsaG014180 AT3G29160.3 29.240 171 81 4 32 163 20 189 1.09e-12 65.5
MsaG014180 AT1G30270.2 28.736 174 83 3 31 163 30 203 1.17e-12 65.5
MsaG014180 AT5G62310.1 27.632 152 71 2 32 144 754 905 1.21e-12 65.9
MsaG014180 AT3G07980.2 28.249 177 85 5 28 163 16 191 1.27e-12 65.9
MsaG014180 AT3G29160.1 29.240 171 81 4 32 163 20 189 1.40e-12 65.5
MsaG014180 AT3G29160.2 29.240 171 81 4 32 163 20 189 1.40e-12 65.5
MsaG014180 AT1G08650.1 27.568 185 90 6 31 173 14 196 1.88e-12 64.3
MsaG014180 AT5G66880.1 29.032 186 93 5 31 179 21 204 2.05e-12 64.7
MsaG014180 AT5G66880.2 29.032 186 93 5 31 179 21 204 2.05e-12 64.7
MsaG014180 AT1G08650.2 27.568 185 90 6 31 173 14 196 2.14e-12 63.9
MsaG014180 AT5G39440.1 25.967 181 93 4 32 173 19 197 2.31e-12 64.7
MsaG014180 AT2G30360.1 37.000 100 60 3 67 163 95 194 2.43e-12 64.7
MsaG014180 AT1G73500.1 32.673 101 66 1 61 161 114 212 3.47e-12 63.9
MsaG014180 AT5G10930.1 37.719 114 64 4 53 163 75 184 7.97e-12 63.2
MsaG014180 AT1G30270.3 36.000 100 61 2 67 163 7 106 9.42e-12 62.8
MsaG014180 AT1G53570.6 30.841 107 64 4 67 169 291 391 1.70e-11 62.4
MsaG014180 AT1G53570.7 30.841 107 64 4 67 169 291 391 1.72e-11 62.4
MsaG014180 AT4G29810.2 27.429 175 88 4 34 170 81 254 2.50e-11 61.6
MsaG014180 AT4G29810.1 27.429 175 88 4 34 170 72 245 2.53e-11 61.6
MsaG014180 AT4G29810.3 27.429 175 88 4 34 170 81 254 2.54e-11 61.6
MsaG014180 AT3G63260.2 48.438 64 33 0 100 163 217 280 3.01e-11 61.2
MsaG014180 AT1G53570.4 29.730 111 68 4 67 173 291 395 3.71e-11 61.2
MsaG014180 AT1G53570.2 29.730 111 68 4 67 173 291 395 3.71e-11 61.2
MsaG014180 AT1G53570.3 29.730 111 68 4 67 173 291 395 3.71e-11 61.2
MsaG014180 AT1G53570.1 29.730 111 68 4 67 173 291 395 3.71e-11 61.2
MsaG014180 AT3G63260.1 48.438 64 33 0 100 163 217 280 4.53e-11 60.8
MsaG014180 AT2G23070.1 22.111 199 116 4 11 173 111 306 5.53e-11 60.8
MsaG014180 AT4G38470.3 48.438 64 28 2 102 163 397 457 5.66e-11 60.8
MsaG014180 AT4G38470.2 48.438 64 28 2 102 163 397 457 6.43e-11 60.5
MsaG014180 AT1G45160.1 28.387 155 72 3 32 147 670 824 6.46e-11 60.8
MsaG014180 AT4G38470.1 48.438 64 28 2 102 163 397 457 6.80e-11 60.5
MsaG014180 AT4G35780.1 48.438 64 28 2 102 163 399 459 7.47e-11 60.5
MsaG014180 AT1G45160.2 28.387 155 72 3 32 147 670 824 7.62e-11 60.5

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGTTGGTCTCCTTATTGA+TGG 0.270399 3:+68548753 None:intergenic
TGACCATTGCCGATATTTCT+TGG 0.281243 3:-68548502 MsaT014180.1:CDS
CGGCAATGGTCATTGGAAAT+TGG 0.300842 3:+68548513 None:intergenic
TGAGCAAATTTGCAGGCTTC+AGG 0.314387 3:+68548044 None:intergenic
GCTCGGACCAATCAAGTTAA+TGG 0.324476 3:-68547980 MsaT014180.1:CDS
CCCTTTGGCTTAATTCTCTC+AGG 0.347048 3:+68548877 None:intergenic
AATCTCGCCATTAACTTGAT+TGG 0.360614 3:+68547973 None:intergenic
GTAAAATAATGATTTCCCTT+TGG 0.394196 3:+68548862 None:intergenic
CTATTAGCATGTGACAATTA+CGG 0.396118 3:-68547905 MsaT014180.1:CDS
TCATTAATGAGCAAATTTGC+AGG 0.410176 3:+68548037 None:intergenic
GAAATATCGGCAATGGTCAT+TGG 0.411829 3:+68548506 None:intergenic
ATAGTCTAATCGAGCAGATT+GGG 0.456391 3:-68548804 MsaT014180.1:CDS
GTACCTGCGCCAAGAAATAT+CGG 0.461903 3:+68548493 None:intergenic
TATAGTCTAATCGAGCAGAT+TGG 0.476153 3:-68548805 MsaT014180.1:CDS
TCACATGCTAATAGAAGCTC+TGG 0.477513 3:+68547914 None:intergenic
CTTAATTGCGACTTTCTCGT+TGG 0.493960 3:+68548738 None:intergenic
GGTGTGCTCAGCCATCAATA+AGG 0.538367 3:-68548764 MsaT014180.1:CDS
TTGCCGATATTTCTTGGCGC+AGG 0.547464 3:-68548496 MsaT014180.1:intron
CCTGAGAGAATTAAGCCAAA+GGG 0.547778 3:-68548877 MsaT014180.1:CDS
ATGACAGAGTATATTGTCAC+GGG 0.552745 3:-68547950 MsaT014180.1:CDS
CTAATCGAGCAGATTGGGAG+AGG 0.557515 3:-68548799 MsaT014180.1:CDS
GCAAGAATGCATCCCACGGA+TGG 0.565016 3:+68547877 None:intergenic
TTTGGCTTAATTCTCTCAGG+AGG 0.570735 3:+68548880 None:intergenic
CAGATTGGGAGAGGGTCGTA+TGG 0.575770 3:-68548790 MsaT014180.1:CDS
TATGTGACTTCGGACTTGCT+CGG 0.583313 3:-68547997 MsaT014180.1:CDS
TATGACAGAGTATATTGTCA+CGG 0.590435 3:-68547951 MsaT014180.1:CDS
TCCTGAGAGAATTAAGCCAA+AGG 0.596710 3:-68548878 MsaT014180.1:CDS
GCGCCAAGAAATATCGGCAA+TGG 0.597426 3:+68548499 None:intergenic
TGGGAGAGGGTCGTATGGCG+TGG 0.598044 3:-68548785 MsaT014180.1:CDS
CAGAGTATATTGTCACGGGT+TGG 0.604813 3:-68547946 MsaT014180.1:CDS
CTCAGCAAGAATGCATCCCA+CGG 0.610293 3:+68547873 None:intergenic
GTCATTGGAAATTGGCTCAG+AGG 0.613015 3:+68548521 None:intergenic
GATTTGAAGATATGTGACTT+CGG 0.636250 3:-68548007 MsaT014180.1:CDS
TAATCGAGCAGATTGGGAGA+GGG 0.660756 3:-68548798 MsaT014180.1:CDS
AATTACGGAACATCCATCCG+TGG 0.663559 3:-68547890 MsaT014180.1:CDS
ATTACGGAACATCCATCCGT+GGG 0.671330 3:-68547889 MsaT014180.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 68547874 68548920 68547874 ID=MsaG014180
Chr3 mRNA 68547874 68548920 68547874 ID=MsaT014180.1;Parent=MsaG014180
Chr3 exon 68547874 68548116 68547874 ID=MsaT014180.1.exon3;Parent=MsaT014180.1
Chr3 CDS 68547874 68548116 68547874 ID=cds.MsaT014180.1;Parent=MsaT014180.1
Chr3 exon 68548497 68548598 68548497 ID=MsaT014180.1.exon2;Parent=MsaT014180.1
Chr3 CDS 68548497 68548598 68548497 ID=cds.MsaT014180.1;Parent=MsaT014180.1
Chr3 exon 68548726 68548920 68548726 ID=MsaT014180.1.exon1;Parent=MsaT014180.1
Chr3 CDS 68548726 68548920 68548726 ID=cds.MsaT014180.1;Parent=MsaT014180.1
Gene Sequence

>MsaT014180.1

ATGGCAACTTTAGTGGAACCTCCTGAGAGAATTAAGCCAAAGGGAAATCATTATTTTACAATGTGGAAAACAATATTTGAGATTGATACGAAATATAGTCTAATCGAGCAGATTGGGAGAGGGTCGTATGGCGTGGTGTGCTCAGCCATCAATAAGGAGACCAACGAGAAAGTCGCAATTAAGAAGATTAGCAATGATGTCTATTTTGTCTATGAACTCATGGATACTGATCTTCATCGTGTTATCAAGTCCTCTGAGCCAATTTCCAATGACCATTGCCGATATTTCTTGGCGCAGTTGCTTGAAGGTCTTAATCATCTTCATTCTGCAAATATTCTTCATCGTGACCTGAAGCCTGCAAATTTGCTCATTAATGAAAATTGTGATTTGAAGATATGTGACTTCGGACTTGCTCGGACCAATCAAGTTAATGGCGAGATTATGACAGAGTATATTGTCACGGGTTGGTATCGTGCTCCAGAGCTTCTATTAGCATGTGACAATTACGGAACATCCATCCGTGGGATGCATTCTTGCTGA
Protein sequence

>MsaT014180.1

MATLVEPPERIKPKGNHYFTMWKTIFEIDTKYSLIEQIGRGSYGVVCSAINKETNEKVAIKKISNDVYFVYELMDTDLHRVIKSSEPISNDHCRYFLAQLLEGLNHLHSANILHRDLKPANLLINENCDLKICDFGLARTNQVNGEIMTEYIVTGWYRAPELLLACDNYGTSIRGMHSC*