AlfalfaGEDB | MsaG014229

M. sativa ssp. caerulea / MsaG014229

KEGG: K10523
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	XP_003600432.1	100.000	330	0	0	33	362	1	330	0.0	681

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	sp\|Q680K8\|Y1576_ARATH	70.091	331	96	3	33	362	1	329	2.37e-172	485

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	tr\|G7IY69\|G7IY69_MEDTR	100.000	330	0	0	33	362	1	330	0.0	681

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TFs/TRs:

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Gene ID	Type	Classification
MsaG014229	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG014228	MsaG014229	0.808658	4.737064e-50	7.832073e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	MtrunA17_Chr3g0103031	100.000	330	0	0	33	362	1	330	0.0	681
MsaG014229	MtrunA17_Chr5g0447111	63.580	324	115	3	38	360	8	329	2.05e-146	417
MsaG014229	MtrunA17_Chr1g0159831	50.450	333	157	4	33	360	1	330	1.02e-116	341
MsaG014229	MtrunA17_Chr3g0124921	51.875	320	150	4	39	356	4	321	2.84e-116	340
MsaG014229	MtrunA17_Chr5g0447191	56.111	180	77	1	179	356	8	187	3.39e-58	187
MsaG014229	MtrunA17_Chr4g0029841	34.031	191	122	1	164	354	90	276	9.87e-30	115
MsaG014229	MtrunA17_Chr7g0259501	27.815	151	94	3	187	324	197	345	1.74e-11	65.1
MsaG014229	MtrunA17_Chr1g0185861	28.289	152	94	3	187	325	201	350	2.08e-11	64.7
MsaG014229	MtrunA17_Chr3g0114411	30.108	186	122	4	166	343	66	251	2.39e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	AT1G55760.1	70.091	331	96	3	33	362	1	329	2.41e-173	485
MsaG014229	AT1G21780.2	51.553	322	154	2	39	360	5	324	2.45e-121	353
MsaG014229	AT1G21780.1	51.553	322	154	2	39	360	5	324	2.45e-121	353
MsaG014229	AT1G01640.1	30.366	191	128	4	174	361	1	189	1.40e-15	75.1
MsaG014229	AT1G01640.2	30.588	170	113	4	195	361	1	168	4.86e-13	67.4
MsaG014229	AT3G03740.1	31.959	194	114	5	181	358	199	390	1.62e-12	68.9
MsaG014229	AT3G56230.1	29.651	172	116	4	184	351	98	268	3.08e-12	67.0
MsaG014229	AT2G40450.1	32.540	126	74	4	178	292	4	129	1.12e-11	63.9

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Find 76 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCTTCACCACCCCATA+TGG	0.411517	3:-69422818	None:intergenic
AAATCTGATCCTTTCAAGAT+TGG	0.383983	3:+69421022	MsaT014229.1:CDS
AATGCTTCTGATGGAAGTAT+AGG	0.485034	3:+69422922	MsaT014229.1:CDS
ACCGATATAGTGATGCATTT+TGG	0.251091	3:-69423230	None:intergenic
ACGCCGTCGTATCCCATTTG+AGG	0.471623	3:-69413612	None:intergenic
AGAACTTCAATATCCTTTCC+AGG	0.396258	3:-69423391	None:intergenic
AGAGGATGGAAGGTCGGAAT+GGG	0.505082	3:-69413580	None:intergenic
AGATCGAACGCAAAAGCCCT+AGG	0.533227	3:+69422850	MsaT014229.1:CDS
AGGATTATCTCTTGTAACAT+TGG	0.466890	3:-69421510	None:intergenic
ATCACAATCAATGCTTCTGA+TGG	0.531417	3:+69422913	MsaT014229.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	69413572	69423407	69413572	ID=MsaG014229
Chr3	mRNA	69413572	69423407	69413572	ID=MsaT014229.1;Parent=MsaG014229
Chr3	exon	69413572	69413666	69413572	ID=MsaT014229.1.exon1;Parent=MsaT014229.1
Chr3	CDS	69413572	69413666	69413572	ID=cds.MsaT014229.1;Parent=MsaT014229.1
Chr3	exon	69420937	69421056	69420937	ID=MsaT014229.1.exon2;Parent=MsaT014229.1
Chr3	CDS	69420937	69421056	69420937	ID=cds.MsaT014229.1;Parent=MsaT014229.1
Chr3	exon	69421454	69421602	69421454	ID=MsaT014229.1.exon3;Parent=MsaT014229.1
Chr3	CDS	69421454	69421602	69421454	ID=cds.MsaT014229.1;Parent=MsaT014229.1
Chr3	exon	69421942	69422060	69421942	ID=MsaT014229.1.exon4;Parent=MsaT014229.1
Chr3	CDS	69421942	69422060	69421942	ID=cds.MsaT014229.1;Parent=MsaT014229.1
Chr3	exon	69422802	69423407	69422802	ID=MsaT014229.1.exon5;Parent=MsaT014229.1
Chr3	CDS	69422802	69423407	69422802	ID=cds.MsaT014229.1;Parent=MsaT014229.1

Gene Sequence

>MsaT014229.1

ATGCAATTCCCATTCCGACCTTCCATCCTCTGTGAACTGCCCTCAAATGGGATACGACGGCGTGGAGTTCCTTTGACAAAGCAATACGATAGCGCAATGACTGATTCTCTTTACAAAGTTGACACAACTCCTCGTCTTGCTCAATGGAGAATCGATAACTTGGCTTCTTGTACTTATCGCAAATCTGATCCTTTCAAGATTGGTATCTGGAATTGGTATTTGTCGGTGGAGAAGCACAAGGTTGTGTTTGTTAAATTGTTTCCTGAAATATCCAATGTTACAAGAGATAATCCTCCAATTGCTTCTTTTATCATGCGTGTCGTTAGTTCTGCTCATGGAAATCGAAAAGCTCTCACACATCCAGAGATAAAAGACAAAGTGATCAAGAGCAATGAAGATTTTGTTTGGTCAATTGAGGTTCCACTTTCTGGAAAATTCATCATTGATGTTGATTTCCTTGATTTGAAGATTGCAGGCCCAGATGGTGGAGAACCTTGCTCCATATGGGGTGGTGAAGGATTTACTCAGGAGAGATCGAACGCAAAAGCCCTAGGGTCTCTTGGTAGAATGCTAAGAGAAGGCATTCACACAGACATCACAATCAATGCTTCTGATGGAAGTATAGGAGTTCATAGAGCTCTTCTAGCTGCCCGTTCACCTGTCTTCCAAAGCATGTTTTCACACGATCTTAAAGAGAAAGAGTTGTCAACCATAAACATCACAGACATGTCGATTGAAGTATGTCAGGCTTTTCTCAATTATCTTTATGGGATCATCAAAAATGAAGAATTTCTGACACATAGGCTAGCGCTTCTGCATGCAGCGGACAAGTATGACATATCTGACTTGAGAGAGGCCATCCATGAGAGTCTTCTAGAAGATATTGATACGAAAAATGTACTTGAAAGGCTCCAAAATGCATCACTATATCGGTTGACGAAACTGAAGATGCATTGTATCCAGTATCTTGTTAAATTTGGTAAAATATTTGAAATTCGGGATGATTTCAATTTATTCCTCCAAAATGCGGATAGGGATCTCATCGCTGAAGTCTTTGGGGAAGTTCTTGGTGCCTGGAAAGGATATTGA

Protein sequence

>MsaT014229.1

MQFPFRPSILCELPSNGIRRRGVPLTKQYDSAMTDSLYKVDTTPRLAQWRIDNLASCTYRKSDPFKIGIWNWYLSVEKHKVVFVKLFPEISNVTRDNPPIASFIMRVVSSAHGNRKALTHPEIKDKVIKSNEDFVWSIEVPLSGKFIIDVDFLDLKIAGPDGGEPCSIWGGEGFTQERSNAKALGSLGRMLREGIHTDITINASDGSIGVHRALLAARSPVFQSMFSHDLKEKELSTINITDMSIEVCQAFLNYLYGIIKNEEFLTHRLALLHAADKYDISDLREAIHESLLEDIDTKNVLERLQNASLYRLTKLKMHCIQYLVKFGKIFEIRDDFNLFLQNADRDLIAEVFGEVLGAWKGY*