AlfalfaGEDB | MsaG014229

M. sativa ssp. caerulea / MsaG014229

KEGG: K10523
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
PFAM: PF00651.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	XP_003600432.1	100.000	330	0	0	33	362	1	330	0.0	681

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	sp\|Q680K8\|Y1576_ARATH	70.091	331	96	3	33	362	1	329	2.37e-172	485

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	tr\|G7IY69\|G7IY69_MEDTR	100.000	330	0	0	33	362	1	330	0.0	681

TFs/TRs:

Gene ID	Type	Classification
MsaG014229	TR	TRAF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG014228	MsaG014229	0.808658	4.737064e-50	7.832073e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	MtrunA17_Chr3g0103031	100.000	330	0	0	33	362	1	330	0.0	681
MsaG014229	MtrunA17_Chr5g0447111	63.580	324	115	3	38	360	8	329	2.05e-146	417
MsaG014229	MtrunA17_Chr1g0159831	50.450	333	157	4	33	360	1	330	1.02e-116	341
MsaG014229	MtrunA17_Chr3g0124921	51.875	320	150	4	39	356	4	321	2.84e-116	340
MsaG014229	MtrunA17_Chr5g0447191	56.111	180	77	1	179	356	8	187	3.39e-58	187
MsaG014229	MtrunA17_Chr4g0029841	34.031	191	122	1	164	354	90	276	9.87e-30	115
MsaG014229	MtrunA17_Chr7g0259501	27.815	151	94	3	187	324	197	345	1.74e-11	65.1
MsaG014229	MtrunA17_Chr1g0185861	28.289	152	94	3	187	325	201	350	2.08e-11	64.7
MsaG014229	MtrunA17_Chr3g0114411	30.108	186	122	4	166	343	66	251	2.39e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014229	AT1G55760.1	70.091	331	96	3	33	362	1	329	2.41e-173	485
MsaG014229	AT1G21780.2	51.553	322	154	2	39	360	5	324	2.45e-121	353
MsaG014229	AT1G21780.1	51.553	322	154	2	39	360	5	324	2.45e-121	353
MsaG014229	AT1G01640.1	30.366	191	128	4	174	361	1	189	1.40e-15	75.1
MsaG014229	AT1G01640.2	30.588	170	113	4	195	361	1	168	4.86e-13	67.4
MsaG014229	AT3G03740.1	31.959	194	114	5	181	358	199	390	1.62e-12	68.9
MsaG014229	AT3G56230.1	29.651	172	116	4	184	351	98	268	3.08e-12	67.0
MsaG014229	AT2G40450.1	32.540	126	74	4	178	292	4	129	1.12e-11	63.9

Find 76 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAATTGAGGTTCCACTTTC+TGG	0.064092	3:+69421986	MsaT014229.1:CDS
CTTGTAACATTGGATATTTC+AGG	0.153912	3:-69421500	None:intergenic
ATCCAGTATCTTGTTAAATT+TGG	0.170654	3:+69423276	MsaT014229.1:CDS
CGACATGTCTGTGATGTTTA+TGG	0.202175	3:-69423028	None:intergenic
TTGGTAAAATATTTGAAATT+CGG	0.228336	3:+69423295	MsaT014229.1:CDS
TGAGATCCCTATCCGCATTT+TGG	0.242657	3:-69423338	None:intergenic
TGGTAAAATATTTGAAATTC+GGG	0.243014	3:+69423296	MsaT014229.1:CDS
ATCTCATCGCTGAAGTCTTT+GGG	0.249673	3:+69423355	MsaT014229.1:CDS
ACCGATATAGTGATGCATTT+TGG	0.251091	3:-69423230	None:intergenic
GAAGTCTTTGGGGAAGTTCT+TGG	0.305595	3:+69423366	MsaT014229.1:CDS
GATCTCATCGCTGAAGTCTT+TGG	0.318696	3:+69423354	MsaT014229.1:CDS
TTCCTTGATTTGAAGATTGC+AGG	0.320978	3:+69422031	MsaT014229.1:CDS
ATCCTTTCAAGATTGGTATC+TGG	0.328253	3:+69421029	MsaT014229.1:CDS
TACCAAATTTAACAAGATAC+TGG	0.332501	3:-69423278	None:intergenic
TCAAGATTGGTATCTGGAAT+TGG	0.343346	3:+69421035	MsaT014229.1:CDS
TTGGGGAAGTTCTTGGTGCC+TGG	0.360323	3:+69423373	MsaT014229.1:CDS
TCCAAAATGCATCACTATAT+CGG	0.363703	3:+69423229	MsaT014229.1:CDS
CTCTGTGAACTGCCCTCAAA+TGG	0.371138	3:+69413599	MsaT014229.1:CDS
AAATCTGATCCTTTCAAGAT+TGG	0.383983	3:+69421022	MsaT014229.1:CDS
AGAACTTCAATATCCTTTCC+AGG	0.396258	3:-69423391	None:intergenic
GATCGTGTGAAAACATGCTT+TGG	0.410502	3:-69422984	None:intergenic
AAATCCTTCACCACCCCATA+TGG	0.411517	3:-69422818	None:intergenic
GTGGAGAACCTTGCTCCATA+TGG	0.412309	3:+69422803	MsaT014229.1:CDS
CAACTCCTCGTCTTGCTCAA+TGG	0.443191	3:+69420966	MsaT014229.1:CDS
AGGATTATCTCTTGTAACAT+TGG	0.466890	3:-69421510	None:intergenic
ACGCCGTCGTATCCCATTTG+AGG	0.471623	3:-69413612	None:intergenic
TGGAGAACCTTGCTCCATAT+GGG	0.474713	3:+69422804	MsaT014229.1:CDS
GCAAAAGCCCTAGGGTCTCT+TGG	0.476148	3:+69422859	MsaT014229.1:CDS
CGAAAAGCTCTCACACATCC+AGG	0.477842	3:+69421581	MsaT014229.1:CDS
CATGTCGATTGAAGTATGTC+AGG	0.482314	3:+69423044	MsaT014229.1:CDS
AATGCTTCTGATGGAAGTAT+AGG	0.485034	3:+69422922	MsaT014229.1:CDS
ATTCCTCCAAAATGCGGATA+GGG	0.487891	3:+69423332	MsaT014229.1:CDS
GCTTTGGAAGACAGGTGAAC+GGG	0.489275	3:-69422968	None:intergenic
CGCCGTCGTATCCCATTTGA+GGG	0.493282	3:-69413611	None:intergenic
TGCTCCATATGGGGTGGTGA+AGG	0.497886	3:+69422814	MsaT014229.1:CDS
GGCCTGCAATCTTCAAATCA+AGG	0.500364	3:-69422033	None:intergenic
AGAGGATGGAAGGTCGGAAT+GGG	0.505082	3:-69413580	None:intergenic
TATTCCTCCAAAATGCGGAT+AGG	0.515510	3:+69423331	MsaT014229.1:CDS
TGAGGGCAGTTCACAGAGGA+TGG	0.521332	3:-69413594	None:intergenic
CAGAGGATGGAAGGTCGGAA+TGG	0.521992	3:-69413581	None:intergenic
CTATCGTATTGCTTTGTCAA+AGG	0.529964	3:-69413641	None:intergenic
GCATTCTACCAAGAGACCCT+AGG	0.531172	3:-69422867	None:intergenic
ATCACAATCAATGCTTCTGA+TGG	0.531417	3:+69422913	MsaT014229.1:CDS
AGATCGAACGCAAAAGCCCT+AGG	0.533227	3:+69422850	MsaT014229.1:CDS
TCAATGGAGAATCGATAACT+TGG	0.536092	3:+69420982	MsaT014229.1:CDS
GAAGTTCTTGGTGCCTGGAA+AGG	0.537759	3:+69423378	MsaT014229.1:CDS
GAAAACATGCTTTGGAAGAC+AGG	0.538730	3:-69422976	None:intergenic
CGCATGATAAAAGAAGCAAT+TGG	0.545571	3:-69421533	None:intergenic
TCTGTGAACTGCCCTCAAAT+GGG	0.545784	3:+69413600	MsaT014229.1:CDS
CGTGTCGTTAGTTCTGCTCA+TGG	0.548473	3:+69421554	MsaT014229.1:CDS
ATGAAGAATTTCTGACACAT+AGG	0.551928	3:+69423100	MsaT014229.1:CDS
ATGATAAAAGAAGCAATTGG+AGG	0.567311	3:-69421530	None:intergenic
GGCAGTTCACAGAGGATGGA+AGG	0.573513	3:-69413590	None:intergenic
CATTCTACCAAGAGACCCTA+GGG	0.576970	3:-69422866	None:intergenic
GGAGAACCTTGCTCCATATG+GGG	0.579524	3:+69422805	MsaT014229.1:CDS
TATCTTCTAGAAGACTCTCA+TGG	0.579860	3:-69423179	None:intergenic
CAATTTATTCCTCCAAAATG+CGG	0.584842	3:+69423326	MsaT014229.1:CDS
TTCTAGAAGACTCTCATGGA+TGG	0.591651	3:-69423175	None:intergenic
TTCCAGATACCAATCTTGAA+AGG	0.598585	3:-69421031	None:intergenic
TCTCATCGCTGAAGTCTTTG+GGG	0.603546	3:+69423356	MsaT014229.1:CDS
GGGTGGTGAAGGATTTACTC+AGG	0.609959	3:+69422825	MsaT014229.1:CDS
TGTGAAATGAAGGTATTTGT+CGG	0.609961	3:+69421442	MsaT014229.1:intron
CTTGGTAGAATGCTAAGAGA+AGG	0.615271	3:+69422877	MsaT014229.1:CDS
GTTCACAGAGGATGGAAGGT+CGG	0.615999	3:-69413586	None:intergenic
TGCTTTGGAAGACAGGTGAA+CGG	0.624572	3:-69422969	None:intergenic
TGCCCTCAAATGGGATACGA+CGG	0.634372	3:+69413609	MsaT014229.1:CDS
TCACCACCCCATATGGAGCA+AGG	0.646739	3:-69422811	None:intergenic
GATCGAACGCAAAAGCCCTA+GGG	0.649072	3:+69422851	MsaT014229.1:CDS
TGACATATCTGACTTGAGAG+AGG	0.662279	3:+69423152	MsaT014229.1:CDS
TTTGTCGGTGGAGAAGCACA+AGG	0.689916	3:+69421457	MsaT014229.1:CDS
TCAAATGGGATACGACGGCG+TGG	0.691759	3:+69413614	MsaT014229.1:CDS
GAAATGAAGGTATTTGTCGG+TGG	0.696589	3:+69421445	MsaT014229.1:intron
ATTCTCCATTGAGCAAGACG+AGG	0.697408	3:-69420971	None:intergenic
GCTAGCGCTTCTGCATGCAG+CGG	0.709404	3:+69423122	MsaT014229.1:CDS
GAACCTTGCTCCATATGGGG+TGG	0.727934	3:+69422808	MsaT014229.1:CDS
CATTTGAGGGCAGTTCACAG+AGG	0.735622	3:-69413598	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	69413572	69423407	69413572	ID=MsaG014229
Chr3	mRNA	69413572	69423407	69413572	ID=MsaT014229.1;Parent=MsaG014229
Chr3	exon	69413572	69413666	69413572	ID=MsaT014229.1.exon1;Parent=MsaT014229.1
Chr3	CDS	69413572	69413666	69413572	ID=cds.MsaT014229.1;Parent=MsaT014229.1
Chr3	exon	69420937	69421056	69420937	ID=MsaT014229.1.exon2;Parent=MsaT014229.1
Chr3	CDS	69420937	69421056	69420937	ID=cds.MsaT014229.1;Parent=MsaT014229.1
Chr3	exon	69421454	69421602	69421454	ID=MsaT014229.1.exon3;Parent=MsaT014229.1
Chr3	CDS	69421454	69421602	69421454	ID=cds.MsaT014229.1;Parent=MsaT014229.1
Chr3	exon	69421942	69422060	69421942	ID=MsaT014229.1.exon4;Parent=MsaT014229.1
Chr3	CDS	69421942	69422060	69421942	ID=cds.MsaT014229.1;Parent=MsaT014229.1
Chr3	exon	69422802	69423407	69422802	ID=MsaT014229.1.exon5;Parent=MsaT014229.1
Chr3	CDS	69422802	69423407	69422802	ID=cds.MsaT014229.1;Parent=MsaT014229.1

Gene Sequence

>MsaT014229.1

ATGCAATTCCCATTCCGACCTTCCATCCTCTGTGAACTGCCCTCAAATGGGATACGACGGCGTGGAGTTCCTTTGACAAAGCAATACGATAGCGCAATGACTGATTCTCTTTACAAAGTTGACACAACTCCTCGTCTTGCTCAATGGAGAATCGATAACTTGGCTTCTTGTACTTATCGCAAATCTGATCCTTTCAAGATTGGTATCTGGAATTGGTATTTGTCGGTGGAGAAGCACAAGGTTGTGTTTGTTAAATTGTTTCCTGAAATATCCAATGTTACAAGAGATAATCCTCCAATTGCTTCTTTTATCATGCGTGTCGTTAGTTCTGCTCATGGAAATCGAAAAGCTCTCACACATCCAGAGATAAAAGACAAAGTGATCAAGAGCAATGAAGATTTTGTTTGGTCAATTGAGGTTCCACTTTCTGGAAAATTCATCATTGATGTTGATTTCCTTGATTTGAAGATTGCAGGCCCAGATGGTGGAGAACCTTGCTCCATATGGGGTGGTGAAGGATTTACTCAGGAGAGATCGAACGCAAAAGCCCTAGGGTCTCTTGGTAGAATGCTAAGAGAAGGCATTCACACAGACATCACAATCAATGCTTCTGATGGAAGTATAGGAGTTCATAGAGCTCTTCTAGCTGCCCGTTCACCTGTCTTCCAAAGCATGTTTTCACACGATCTTAAAGAGAAAGAGTTGTCAACCATAAACATCACAGACATGTCGATTGAAGTATGTCAGGCTTTTCTCAATTATCTTTATGGGATCATCAAAAATGAAGAATTTCTGACACATAGGCTAGCGCTTCTGCATGCAGCGGACAAGTATGACATATCTGACTTGAGAGAGGCCATCCATGAGAGTCTTCTAGAAGATATTGATACGAAAAATGTACTTGAAAGGCTCCAAAATGCATCACTATATCGGTTGACGAAACTGAAGATGCATTGTATCCAGTATCTTGTTAAATTTGGTAAAATATTTGAAATTCGGGATGATTTCAATTTATTCCTCCAAAATGCGGATAGGGATCTCATCGCTGAAGTCTTTGGGGAAGTTCTTGGTGCCTGGAAAGGATATTGA

Protein sequence

>MsaT014229.1

MQFPFRPSILCELPSNGIRRRGVPLTKQYDSAMTDSLYKVDTTPRLAQWRIDNLASCTYRKSDPFKIGIWNWYLSVEKHKVVFVKLFPEISNVTRDNPPIASFIMRVVSSAHGNRKALTHPEIKDKVIKSNEDFVWSIEVPLSGKFIIDVDFLDLKIAGPDGGEPCSIWGGEGFTQERSNAKALGSLGRMLREGIHTDITINASDGSIGVHRALLAARSPVFQSMFSHDLKEKELSTINITDMSIEVCQAFLNYLYGIIKNEEFLTHRLALLHAADKYDISDLREAIHESLLEDIDTKNVLERLQNASLYRLTKLKMHCIQYLVKFGKIFEIRDDFNLFLQNADRDLIAEVFGEVLGAWKGY*