AlfalfaGEDB | MsaG014247

M. sativa ssp. caerulea / MsaG014247

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014247	XP_003600455.1	78.596	285	56	3	1	284	1	281	4.86e-156	446

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014247	sp\|Q8L3W1\|VRN1_ARATH	26.765	340	183	10	8	285	1	336	2.59e-33	127

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014247	tr\|G8A2Z2\|G8A2Z2_MEDTR	78.596	285	56	3	1	284	1	281	2.32e-156	446

TFs/TRs:

Gene ID	Type	Classification
MsaG014247	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000193	MsaG014247	0.814564	2.497335e-51	4.774628e-49
MsaG000237	MsaG014247	0.801802	1.271647e-48	1.790892e-46
MsaG000458	MsaG014247	0.846836	3.186388e-59	1.551800e-56
MsaG000476	MsaG014247	0.805114	2.637004e-49	4.008494e-47
MsaG001238	MsaG014247	0.836762	1.416229e-56	5.001600e-54
MsaG001538	MsaG014247	0.837471	9.351416e-57	3.374688e-54
MsaG001836	MsaG014247	0.802426	9.477188e-49	1.353843e-46
MsaG003174	MsaG014247	0.805746	1.947157e-49	3.003686e-47
MsaG003768	MsaG014247	0.837017	1.220483e-56	4.343502e-54
MsaG004462	MsaG014247	0.818025	4.235845e-52	8.847089e-50
MsaG004504	MsaG014247	0.820794	9.969051e-53	2.239055e-50
MsaG004538	MsaG014247	0.818474	3.355504e-52	7.089933e-50
MsaG004986	MsaG014247	0.803888	4.738371e-49	7.000682e-47
MsaG005092	MsaG014247	0.835159	3.597521e-56	1.210757e-53
MsaG005274	MsaG014247	0.855363	1.283358e-61	8.400565e-59
MsaG005329	MsaG014247	0.840192	1.863528e-57	7.318616e-55
MsaG005702	MsaG014247	0.828836	1.290586e-54	3.612913e-52
MsaG006219	MsaG014247	0.810648	1.777225e-50	3.083372e-48
MsaG006926	MsaG014247	0.825589	7.666754e-54	1.960090e-51
MsaG007122	MsaG014247	0.807216	9.565366e-50	1.527648e-47
MsaG007432	MsaG014247	0.812380	7.504707e-51	1.358572e-48
MsaG008035	MsaG014247	0.803382	6.028099e-49	8.802627e-47
MsaG009061	MsaG014247	0.820116	1.423847e-52	3.141337e-50
MsaG009786	MsaG014247	0.854683	2.019119e-61	1.289711e-58
MsaG010278	MsaG014247	0.853571	4.211761e-61	2.585522e-58
MsaG010365	MsaG014247	0.826390	4.958845e-54	1.296365e-51
MsaG010768	MsaG014247	0.836343	1.809391e-56	6.310072e-54
MsaG011080	MsaG014247	0.801009	1.845051e-48	2.552091e-46
MsaG011298	MsaG014247	0.849906	4.553136e-60	2.459676e-57
MsaG012448	MsaG014247	0.885035	2.477142e-71	5.683392e-68
MsaG012555	MsaG014247	0.842566	4.451347e-58	1.885033e-55
MsaG013917	MsaG014247	0.813002	5.491419e-51	1.009645e-48
MsaG014153	MsaG014247	0.958568	6.006975e-116	2.775936e-110
MsaG014247	MsaG015092	0.820537	1.141263e-52	2.546030e-50
MsaG014247	MsaG015807	0.805714	1.977325e-49	3.047967e-47
MsaG014247	MsaG016291	0.800759	2.074540e-48	2.853429e-46
MsaG014247	MsaG017057	0.807783	7.262573e-50	1.175739e-47
MsaG014247	MsaG017150	0.805813	1.885277e-49	2.912821e-47
MsaG014247	MsaG017515	0.839450	2.901137e-57	1.113170e-54
MsaG014247	MsaG017518	0.842605	4.347053e-58	1.843127e-55
MsaG014247	MsaG017946	0.810423	1.987288e-50	3.428988e-48
MsaG014247	MsaG018489	0.815602	1.472110e-51	2.889479e-49
MsaG014247	MsaG018565	0.825152	9.717395e-54	2.454649e-51
MsaG014247	MsaG018577	0.825501	8.045509e-54	2.051909e-51
MsaG014247	MsaG018786	0.845895	5.738403e-59	2.708333e-56
MsaG014247	MsaG018793	0.802485	9.215840e-49	1.318282e-46
MsaG014247	MsaG018913	0.831753	2.520536e-55	7.673566e-53
MsaG014247	MsaG018975	0.822939	3.196308e-53	7.602228e-51
MsaG014247	MsaG019055	0.817748	4.889516e-52	1.013919e-49
MsaG014247	MsaG019564	0.825096	1.002127e-53	2.527489e-51
MsaG014247	MsaG019628	0.823374	2.531874e-53	6.093546e-51
MsaG014247	MsaG019935	0.845880	5.789355e-59	2.731028e-56
MsaG014247	MsaG019985	0.808336	5.542706e-50	9.093081e-48
MsaG014247	MsaG020467	0.808172	6.005548e-50	9.813921e-48
MsaG014247	MsaG020616	0.821605	6.495846e-53	1.490679e-50
MsaG014247	MsaG020652	0.854989	1.646778e-61	1.063426e-58
MsaG014247	MsaG020824	0.824456	1.415869e-53	3.509161e-51
MsaG014247	MsaG020963	0.820489	1.170789e-52	2.608540e-50
MsaG014247	MsaG022116	0.822270	4.565422e-53	1.066419e-50
MsaG014247	MsaG022515	0.805843	1.858211e-49	2.873046e-47
MsaG014247	MsaG022895	0.813305	4.716983e-51	8.737901e-49
MsaG014247	MsaG023119	0.804177	4.128463e-49	6.140738e-47
MsaG014247	MsaG023885	0.839143	3.482600e-57	1.323505e-54
MsaG014247	MsaG023890	0.830143	6.234233e-55	1.811626e-52
MsaG014247	MsaG024668	0.814556	2.507105e-51	4.792418e-49
MsaG014247	MsaG025492	0.815185	1.821545e-51	3.537702e-49
MsaG014247	MsaG025651	0.810868	1.593907e-50	2.780111e-48
MsaG014247	MsaG026849	0.814567	2.492525e-51	4.765848e-49
MsaG014247	MsaG027026	0.808951	4.101937e-50	6.830081e-48
MsaG014247	MsaG027775	0.840669	1.400502e-57	5.583199e-55
MsaG014247	MsaG028109	0.828225	1.809990e-54	4.980999e-52
MsaG014247	MsaG028416	0.809671	2.879974e-50	4.879242e-48
MsaG014247	MsaG028757	0.813130	5.151237e-51	9.500907e-49
MsaG014247	MsaG029232	0.831416	3.049411e-55	9.191812e-53
MsaG014247	MsaG029335	0.843477	2.553022e-58	1.113185e-55
MsaG014247	MsaG029413	0.822623	3.782539e-53	8.920161e-51
MsaG014247	MsaG029424	0.846096	5.062504e-59	2.405352e-56
MsaG014247	MsaG029625	0.838358	5.543925e-57	2.055838e-54
MsaG014247	MsaG029896	0.861185	2.416866e-63	1.965826e-60
MsaG014247	MsaG030032	0.811407	1.219680e-50	2.155695e-48
MsaG014247	MsaG030827	0.827215	3.155491e-54	8.441107e-52
MsaG014247	MsaG031754	0.859975	5.598396e-63	4.348518e-60
MsaG014247	MsaG033318	0.817247	6.332656e-52	1.296422e-49
MsaG014247	MsaG033593	0.817739	4.911670e-52	1.018289e-49
MsaG014247	MsaG033646	0.836967	1.256612e-56	4.465247e-54
MsaG014247	MsaG034601	0.828471	1.579499e-54	4.377108e-52
MsaG014247	MsaG034946	0.826421	4.875549e-54	1.275717e-51
MsaG014247	MsaG035051	0.803580	5.486784e-49	8.048792e-47
MsaG014247	MsaG034996	0.819224	2.270695e-52	4.893046e-50
MsaG014247	MsaG035198	0.807997	6.543133e-50	1.064733e-47
MsaG014247	MsaG035407	0.838297	5.748290e-57	2.127680e-54
MsaG014247	MsaG036154	0.887064	4.300987e-72	1.090753e-68
MsaG014247	MsaG040379	0.801701	1.333484e-48	1.873625e-46
MsaG014247	MsaG041112	0.817543	5.434411e-52	1.121017e-49
MsaG014247	MsaG041285	0.801340	1.579902e-48	2.201806e-46
MsaG014247	MsaG041306	0.801349	1.573517e-48	2.193287e-46
MsaG014247	MsaG041336	0.808421	5.317205e-50	8.741142e-48
MsaG014247	MsaG041819	0.801591	1.404600e-48	1.968598e-46
MsaG014247	MsaG041949	0.800368	2.489583e-48	3.394215e-46
MsaG014247	MsaG042415	0.803043	7.078385e-49	1.025572e-46
MsaG014247	MsaG042579	0.858163	1.942886e-62	1.409477e-59
MsaG014247	MsaG042717	0.818085	4.107435e-52	8.591813e-50
MsaG014247	MsaG044218	0.803312	6.230703e-49	9.083685e-47
MsaG014247	MsaG044451	0.806943	1.092057e-49	1.732857e-47
MsaG014247	MsaG044622	0.825665	7.359454e-54	1.885491e-51
MsaG014247	MsaG045078	0.810692	1.739543e-50	3.021119e-48
MsaG014247	MsaG045310	0.869787	4.842700e-66	5.561780e-63
MsaG014247	MsaG045262	0.865009	1.609029e-64	1.520734e-61
MsaG014247	MsaG045372	0.811557	1.131571e-50	2.007352e-48
MsaG014247	MsaG045374	0.807526	8.229168e-50	1.324021e-47
MsaG014247	MsaG045392	0.843904	1.964506e-58	8.683617e-56
MsaG014247	MsaG045395	0.801734	1.313368e-48	1.846760e-46
MsaG014247	MsaG045567	0.804417	3.682346e-49	5.507642e-47
MsaG014247	MsaG045568	0.828302	1.734303e-54	4.783072e-52
MsaG014247	MsaG045576	0.814550	2.513902e-51	4.804738e-49
MsaG014247	MsaG046027	0.813530	4.211823e-51	7.846661e-49
MsaG014247	MsaG046473	0.872251	7.525112e-67	9.598442e-64
MsaG014247	MsaG046498	0.832029	2.156904e-55	6.619284e-53
MsaG014247	MsaG046507	0.858786	1.268799e-62	9.421543e-60
MsaG014247	MsaG047019	0.808624	4.815628e-50	7.955231e-48
MsaG014247	MsaG047047	0.812668	6.496772e-51	1.184518e-48
MsaG014247	MsaG002204	0.809891	2.584424e-50	4.401848e-48
MsaG014247	MsaG001950	0.810063	2.373971e-50	4.060280e-48
MsaG014247	MsaG003742	0.833306	1.042889e-55	3.321894e-53
MsaG014247	MsaG008251	0.838338	5.612584e-57	2.080014e-54
MsaG014247	MsaG009266	0.817977	4.343785e-52	9.061109e-50
MsaG014247	MsaG015507	0.804711	3.198725e-49	4.816933e-47
MsaG014247	MsaG018209	0.854789	1.881376e-61	1.206252e-58
MsaG014247	MsaG019866	0.804761	3.123844e-49	4.709723e-47
MsaG014247	MsaG019592	0.851327	1.823104e-60	1.034351e-57
MsaG014247	MsaG026434	0.810807	1.643138e-50	2.861784e-48
MsaG014247	MsaG028121	0.811580	1.118583e-50	1.985463e-48
MsaG014247	MsaG026431	0.837972	6.964220e-57	2.552013e-54
MsaG014247	MsaG028141	0.835598	2.790115e-56	9.514599e-54
MsaG014247	MsaG034262	0.853783	3.660793e-61	2.264531e-58
MsaG014247	MsaG030190	0.823112	2.913845e-53	6.962885e-51
MsaG014247	MsaG032408	0.806918	1.105326e-49	1.752886e-47
MsaG014247	MsaG030214	0.818703	2.979415e-52	6.332926e-50
MsaG014247	MsaG033182	0.806368	1.442392e-49	2.258036e-47
MsaG014247	MsaG036471	0.814037	3.259620e-51	6.150274e-49
MsaG014247	MsaG040777	0.822660	3.708551e-53	8.754321e-51
MsaG014247	MsaG038711	0.812459	7.210553e-51	1.307920e-48
MsaG014247	MsaG037513	0.802029	1.142827e-48	1.617739e-46
MsaG014247	MsaG037376	0.807713	7.513101e-50	1.214264e-47
MsaG014247	MsaG036473	0.844099	1.742677e-58	7.752564e-56
MsaG014247	MsaG035795	0.827877	2.193403e-54	5.977459e-52
MsaG014247	MsaG036029	0.800274	2.601986e-48	3.539787e-46
MsaG014247	MsaG042989	0.816786	8.027425e-52	1.623945e-49
MsaG014247	MsaG042833	0.814695	2.335626e-51	4.480370e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014247	MtrunA17_Chr3g0103191	80.952	252	46	2	1	251	1	251	1.18e-147	414
MsaG014247	MtrunA17_Chr3g0103181	72.887	284	72	3	1	284	1	279	8.14e-147	413
MsaG014247	MtrunA17_Chr3g0103171	69.732	261	78	1	25	284	5	265	2.04e-129	368
MsaG014247	MtrunA17_Chr3g0103201	76.923	221	49	2	65	284	1	220	4.29e-118	338
MsaG014247	MtrunA17_Chr3g0103151	77.640	161	36	0	1	161	1	161	1.02e-89	264
MsaG014247	MtrunA17_Chr3g0103161	66.935	124	40	1	162	285	2	124	3.94e-52	167
MsaG014247	MtrunA17_Chr8g0390841	33.974	312	157	8	10	287	37	333	6.93e-51	175
MsaG014247	MtrunA17_Chr8g0390841	48.438	64	30	2	223	285	457	518	3.12e-11	63.5
MsaG014247	MtrunA17_Chr1g0163071	36.395	294	145	10	26	285	2	287	2.23e-49	166
MsaG014247	MtrunA17_Chr1g0208771	32.886	298	150	8	21	285	10	290	1.12e-44	157
MsaG014247	MtrunA17_Chr1g0208771	26.207	290	166	13	12	285	201	458	9.91e-12	65.1
MsaG014247	MtrunA17_Chr7g0233561	31.561	301	185	6	7	286	13	313	3.73e-42	147
MsaG014247	MtrunA17_Chr3g0131891	31.788	302	169	8	9	286	16	304	6.19e-39	139
MsaG014247	MtrunA17_Chr7g0233521	31.716	268	173	4	25	286	1	264	1.40e-35	129
MsaG014247	MtrunA17_Chr1g0163251	29.682	283	179	8	12	285	9	280	1.10e-30	118
MsaG014247	MtrunA17_Chr5g0429931	30.075	266	154	5	21	285	8	242	1.35e-30	115
MsaG014247	MtrunA17_Chr7g0233541	29.110	292	164	8	26	286	2	281	1.76e-30	116
MsaG014247	MtrunA17_Chr4g0067431	31.949	313	161	13	10	284	13	311	2.26e-30	116
MsaG014247	MtrunA17_Chr7g0233531	30.855	269	172	7	26	286	2	264	1.02e-29	114
MsaG014247	MtrunA17_Chr3g0077451	28.947	266	148	5	24	287	10	236	7.81e-29	110
MsaG014247	MtrunA17_Chr1g0163131	30.063	316	165	12	2	281	8	303	1.63e-28	111
MsaG014247	MtrunA17_Chr7g0233571	37.908	153	93	1	4	154	2	154	8.23e-28	107
MsaG014247	MtrunA17_Chr1g0163261	26.481	287	184	6	9	281	6	279	4.73e-27	107
MsaG014247	MtrunA17_Chr5g0419201	35.333	150	93	2	12	157	16	165	1.56e-26	103
MsaG014247	MtrunA17_Chr1g0163181	28.475	295	172	12	14	283	11	291	1.99e-26	107
MsaG014247	MtrunA17_Chr3g0077411	28.136	295	172	7	1	284	251	516	9.97e-26	106
MsaG014247	MtrunA17_Chr3g0077411	26.199	271	143	5	12	278	25	242	1.08e-20	91.7
MsaG014247	MtrunA17_Chr3g0077461	30.970	268	133	8	12	274	237	457	2.75e-25	104
MsaG014247	MtrunA17_Chr3g0077461	39.450	109	64	1	20	128	19	125	4.67e-19	87.0
MsaG014247	MtrunA17_Chr1g0163221	30.717	293	174	11	10	284	9	290	7.19e-25	102
MsaG014247	MtrunA17_Chr1g0163201	26.056	284	175	8	25	287	18	287	4.73e-24	100
MsaG014247	MtrunA17_Chr1g0162441	36.957	138	75	3	8	133	1	138	2.92e-23	98.6
MsaG014247	MtrunA17_Chr4g0033961	34.848	132	76	2	12	133	6	137	5.41e-22	95.1
MsaG014247	MtrunA17_Chr1g0163231	24.913	289	186	9	9	283	6	277	1.23e-21	92.4
MsaG014247	MtrunA17_Chr3g0077421	28.017	232	125	5	57	285	4	196	1.05e-19	85.1
MsaG014247	MtrunA17_Chr3g0077441	28.017	232	125	5	57	285	4	196	1.05e-19	85.1
MsaG014247	MtrunA17_Chr1g0162411	39.823	113	63	3	7	117	3	112	1.30e-19	88.6
MsaG014247	MtrunA17_Chr3g0077431	27.660	235	125	6	57	287	4	197	3.52e-19	83.6
MsaG014247	MtrunA17_Chr3g0077381	34.483	116	76	0	13	128	23	138	1.20e-18	85.5
MsaG014247	MtrunA17_Chr3g0077381	42.529	87	50	0	22	108	259	345	5.38e-16	77.8
MsaG014247	MtrunA17_Chr1g0171611	23.611	288	179	7	9	283	6	265	1.21e-18	84.0
MsaG014247	MtrunA17_Chr6g0467351	32.692	156	91	3	10	162	13	157	2.40e-18	82.0
MsaG014247	MtrunA17_Chr3g0077361	26.259	278	136	10	12	278	40	259	3.81e-18	84.3
MsaG014247	MtrunA17_Chr4g0009491	34.711	121	68	1	22	131	237	357	5.42e-18	83.6
MsaG014247	MtrunA17_Chr4g0009491	30.973	113	78	0	16	128	3	115	5.67e-15	74.7
MsaG014247	MtrunA17_Chr1g0163241	36.522	115	66	3	15	126	14	124	1.15e-17	78.6
MsaG014247	MtrunA17_Chr1g0163191	31.304	115	75	2	12	126	9	119	1.26e-17	78.6
MsaG014247	MtrunA17_Chr1g0163061	40.385	104	59	2	8	108	11	114	1.40e-17	80.9
MsaG014247	MtrunA17_Chr1g0154161	23.077	286	203	6	13	287	30	309	4.85e-17	80.1
MsaG014247	MtrunA17_Chr6g0476181	41.509	106	59	2	26	131	2	104	5.11e-17	76.6
MsaG014247	MtrunA17_Chr1g0154131	22.222	288	205	6	10	281	182	466	2.16e-16	79.0
MsaG014247	MtrunA17_Chr1g0163161	41.176	102	51	3	38	133	1	99	1.10e-15	72.4
MsaG014247	MtrunA17_Chr1g0163081	39.130	115	60	4	26	134	6	116	1.56e-15	72.4
MsaG014247	MtrunA17_Chr1g0162161	29.545	176	96	7	26	196	4	156	7.55e-15	70.9
MsaG014247	MtrunA17_Chr1g0163121	35.461	141	75	6	24	158	9	139	1.07e-14	70.1
MsaG014247	MtrunA17_Chr1g0163101	30.496	141	87	5	2	134	7	144	1.80e-14	70.5
MsaG014247	MtrunA17_Chr1g0163141	39.583	96	55	2	24	119	9	101	1.85e-14	70.5
MsaG014247	MtrunA17_Chr1g0162421	39.655	58	35	0	24	81	7	64	2.55e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014247	AT3G18990.1	26.765	340	183	10	8	285	1	336	2.64e-34	127
MsaG014247	AT3G18990.2	26.765	340	183	10	8	285	1	336	5.57e-34	127
MsaG014247	AT1G49475.1	38.843	121	70	3	11	129	33	151	3.27e-19	84.0
MsaG014247	AT4G01580.1	32.609	138	85	2	11	146	29	160	2.06e-18	81.6
MsaG014247	AT3G18960.2	39.000	100	59	1	11	108	29	128	1.29e-17	79.7
MsaG014247	AT3G18960.1	39.000	100	59	1	11	108	29	128	1.35e-17	79.7
MsaG014247	AT4G33280.1	25.083	303	194	10	10	285	23	319	9.15e-17	79.7
MsaG014247	AT3G18960.3	41.667	84	49	0	25	108	8	91	6.62e-15	71.6
MsaG014247	AT1G49480.3	29.457	129	84	4	160	285	97	221	2.79e-13	68.2
MsaG014247	AT1G49480.1	29.457	129	84	4	160	285	97	221	2.79e-13	68.2
MsaG014247	AT1G49480.2	29.457	129	84	4	160	285	97	221	2.79e-13	68.2

Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGACCACATAAGAAAGTTAA+AGG	0.201598	3:+69713336	MsaT014247.1:CDS
TGTCTCCTAGTAAACTTATT+TGG	0.219584	3:-69712964	None:intergenic
GCACTAAATGGAAAGTTTAT+TGG	0.220986	3:+69713031	MsaT014247.1:CDS
TCCTGAGCTCTAGCATCTTT+TGG	0.280232	3:-69720394	None:intergenic
CAATCCTTTGAAGATTAGTT+TGG	0.289306	3:-69712657	None:intergenic
AGACTCCTGATGGCACTAAA+TGG	0.296213	3:+69713019	MsaT014247.1:CDS
CTCTCTTGGACATGGCTGTT+TGG	0.307883	3:+69713113	MsaT014247.1:CDS
GGTGAGATTTGGTTTGAAAA+TGG	0.311641	3:+69713066	MsaT014247.1:CDS
TTTACTGAAAATTACTCTCT+TGG	0.354240	3:+69713099	MsaT014247.1:CDS
AAAGAACTTCATCAATGAAT+TGG	0.387908	3:+69720371	MsaT014247.1:CDS
TATGTAACTGCAGATTTAAA+AGG	0.392361	3:+69720614	MsaT014247.1:CDS
TCTTAGATGAATGGCTTAAT+CGG	0.403352	3:+69713277	MsaT014247.1:CDS
AATCTATTTCCACTGCATTC+CGG	0.411258	3:-69713185	None:intergenic
CACTTGAGATCTTAGATGAA+TGG	0.431142	3:+69713268	MsaT014247.1:CDS
ACTTTCCATTTAGTGCCATC+AGG	0.440549	3:-69713024	None:intergenic
AGTATGTGATTCTGCAGATT+GGG	0.463556	3:+69720657	MsaT014247.1:CDS
AAACCTTTAACTTTCTTATG+TGG	0.464229	3:-69713339	None:intergenic
TCCTTTGAAGATTAGTTTGG+AGG	0.466963	3:-69712654	None:intergenic
ACTTCAAACAGATACATTAA+CGG	0.476013	3:-69720858	None:intergenic
TTCACTTTCGCTTGCAAACA+AGG	0.476076	3:-69720753	None:intergenic
AGATTTGGTTTGAAAATGGT+TGG	0.487548	3:+69713070	MsaT014247.1:CDS
AAATATGTGTACATCAAACT+TGG	0.487598	3:-69713160	None:intergenic
AAATACCAAATAAGTTTACT+AGG	0.488511	3:+69712959	MsaT014247.1:CDS
TTGGTGGTGTTTGAATATAA+AGG	0.491592	3:+69713132	MsaT014247.1:CDS
TGCAGATTGGGAAAAGATCA+TGG	0.498577	3:+69720669	MsaT014247.1:CDS
GATATAATTTCCTTTAGCCA+TGG	0.504996	3:-69712605	None:intergenic
TTAACTTTCTTATGTGGTCG+AGG	0.505436	3:-69713333	None:intergenic
TCTTGGACATGGCTGTTTGG+TGG	0.505898	3:+69713116	MsaT014247.1:CDS
ACTCCATCATCCATGGCTAA+AGG	0.511990	3:+69712595	None:intergenic
TGTGGTCGAGGAGAAGCTAA+TGG	0.512745	3:-69713321	None:intergenic
GCCAAAAGATGCTAGAGCTC+AGG	0.513948	3:+69720393	MsaT014247.1:CDS
CCAGCTTACTATCTACTGTA+TGG	0.515143	3:-69720474	None:intergenic
AATGGTTTCTATCTATCGGC+GGG	0.522564	3:+69720725	MsaT014247.1:CDS
GAGTATGTGATTCTGCAGAT+TGG	0.526064	3:+69720656	MsaT014247.1:CDS
TTGATGTACACATATTTGAC+CGG	0.536461	3:+69713166	MsaT014247.1:CDS
TCAGGAGTCTTTATCAACAC+TGG	0.545485	3:-69713006	None:intergenic
GTTTCTATCTATCGGCGGGT+TGG	0.546695	3:+69720729	MsaT014247.1:CDS
TCCTCCAAACTAATCTTCAA+AGG	0.552905	3:+69712653	MsaT014247.1:CDS
AGCGAAAGTGAACTGCAACC+AGG	0.561940	3:+69720764	MsaT014247.1:CDS
TCAAAGACACAAACATCTCC+TGG	0.563620	3:-69720782	None:intergenic
TGAATGGCTTAATCGGAAGA+AGG	0.573439	3:+69713284	MsaT014247.1:CDS
AAATGGTTTCTATCTATCGG+CGG	0.576380	3:+69720724	MsaT014247.1:CDS
CCATACAGTAGATAGTAAGC+TGG	0.603183	3:+69720474	MsaT014247.1:CDS
TTACTATCTACTGTATGGTG+AGG	0.604910	3:-69720469	None:intergenic
AGGAGTTATTGAGAACAAAG+AGG	0.607683	3:+69720634	MsaT014247.1:CDS
CATATTTGACCGGAATGCAG+TGG	0.622074	3:+69713176	MsaT014247.1:CDS
GAAAATTACTCTCTTGGACA+TGG	0.632483	3:+69713105	MsaT014247.1:CDS
AATAAGTTTACTAGGAGACA+TGG	0.640204	3:+69712967	MsaT014247.1:CDS
GTGTTGATAAAGACTCCTGA+TGG	0.643737	3:+69713009	MsaT014247.1:CDS
ATCGGAAGAAGGCTAGACAA+AGG	0.662228	3:+69713295	MsaT014247.1:CDS
GAAATTGATCTGTTCTAACG+AGG	0.726190	3:+69720697	MsaT014247.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	69712607	69720877	69712607	ID=MsaG014247
Chr3	mRNA	69712607	69720877	69712607	ID=MsaT014247.1;Parent=MsaG014247
Chr3	exon	69712607	69712678	69712607	ID=MsaT014247.1.exon1;Parent=MsaT014247.1
Chr3	CDS	69712607	69712678	69712607	ID=cds.MsaT014247.1;Parent=MsaT014247.1
Chr3	exon	69712958	69713357	69712958	ID=MsaT014247.1.exon2;Parent=MsaT014247.1
Chr3	CDS	69712958	69713357	69712958	ID=cds.MsaT014247.1;Parent=MsaT014247.1
Chr3	exon	69720350	69720495	69720350	ID=MsaT014247.1.exon3;Parent=MsaT014247.1
Chr3	CDS	69720350	69720495	69720350	ID=cds.MsaT014247.1;Parent=MsaT014247.1
Chr3	exon	69720614	69720877	69720614	ID=MsaT014247.1.exon4;Parent=MsaT014247.1
Chr3	CDS	69720614	69720877	69720614	ID=cds.MsaT014247.1;Parent=MsaT014247.1

Gene Sequence

>MsaT014247.1

ATGGCTAAAGGAAATTATATCCTTCCCATCCGTTTCTTCAAAATCATCCTCCAAACTAATCTTCAAAGGATTCAAATACCAAATAAGTTTACTAGGAGACATGGAGTTCATCTATCAAATCCAGTGTTGATAAAGACTCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGTGAGATTTGGTTTGAAAATGGTTGGAAAACTTTTACTGAAAATTACTCTCTTGGACATGGCTGTTTGGTGGTGTTTGAATATAAAGGAACTTCCAAGTTTGATGTACACATATTTGACCGGAATGCAGTGGAAATAGATTATGATTCTTCATGTGACACTGATGATGAAAAAGACAATGTTGATCATAGTGATGATGAATCACTTGAGATCTTAGATGAATGGCTTAATCGGAAGAAGGCTAGACAAAGGTCACCATTAGCTTCTCCTCGACCACATAAGAAAGTTAAAGGTGATCATGAGAAGACTACTAAAAGAACTTCATCAATGAATTGGCCAAAAGATGCTAGAGCTCAGGAAGTTGCTCAAAATTTCATCTCAACCAATCCTTTTTTCACAATTCTTGTAAAACCTCACCATACAGTAGATAGTAAGCTGTATGTAACTGCAGATTTAAAAGGAGTTATTGAGAACAAAGAGGAGTATGTGATTCTGCAGATTGGGAAAAGATCATGGAATGTGAAATTGATCTGTTCTAACGAGGCTAAAAATGGTTTCTATCTATCGGCGGGTTGGTCCTTGTTTGCAAGCGAAAGTGAACTGCAACCAGGAGATGTTTGTGTCTTTGAACTGATAAAAAAGAAAGATTTCGTTTTTAAAGTTCATGTCTTCAAAAAAGGGACCGTTAATGTATCTGTTTGA

Protein sequence

>MsaT014247.1

MAKGNYILPIRFFKIILQTNLQRIQIPNKFTRRHGVHLSNPVLIKTPDGTKWKVYWKKINGEIWFENGWKTFTENYSLGHGCLVVFEYKGTSKFDVHIFDRNAVEIDYDSSCDTDDEKDNVDHSDDESLEILDEWLNRKKARQRSPLASPRPHKKVKGDHEKTTKRTSSMNWPKDARAQEVAQNFISTNPFFTILVKPHHTVDSKLYVTADLKGVIENKEEYVILQIGKRSWNVKLICSNEAKNGFYLSAGWSLFASESELQPGDVCVFELIKKKDFVFKVHVFKKGTVNVSV*