AlfalfaGEDB | MsaG014251

M. sativa ssp. caerulea / MsaG014251

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014251	XP_003600453.1	76.316	114	27	0	1	114	171	284	2.08e-56	186

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014251	tr\|G8A2Z4\|G8A2Z4_MEDTR	76.316	114	27	0	1	114	171	284	9.94e-57	186

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TFs/TRs:

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Gene ID	Type	Classification
MsaG014251	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000118	MsaG014251	0.825563	7.776034e-54	1.986638e-51
MsaG000523	MsaG014251	0.812238	8.055261e-51	1.453033e-48
MsaG001390	MsaG014251	0.804969	2.826871e-49	4.282642e-47
MsaG004084	MsaG014251	0.811183	1.363132e-50	2.396032e-48
MsaG004902	MsaG014251	0.820511	1.157251e-52	2.579858e-50
MsaG005394	MsaG014251	0.805457	2.236745e-49	3.427221e-47
MsaG006119	MsaG014251	0.822397	4.267218e-53	1.000193e-50
MsaG006979	MsaG014251	0.817688	5.043807e-52	1.044277e-49
MsaG010497	MsaG014251	0.804346	3.808823e-49	5.687624e-47
MsaG013266	MsaG014251	0.824158	1.662167e-53	4.086106e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014251	MtrunA17_Chr3g0103201	74.561	114	29	0	1	114	107	220	3.60e-57	176
MsaG014251	MtrunA17_Chr3g0103161	69.231	117	36	0	2	118	11	127	2.48e-55	168
MsaG014251	MtrunA17_Chr3g0103181	69.912	113	34	0	2	114	167	279	6.91e-51	162
MsaG014251	MtrunA17_Chr3g0103171	63.793	116	40	1	1	114	150	265	1.97e-44	145
MsaG014251	MtrunA17_Chr3g0103191	69.512	82	24	1	1	81	170	251	3.68e-32	113
MsaG014251	MtrunA17_Chr8g0390841	52.381	63	29	1	53	115	457	518	6.59e-16	72.4
MsaG014251	MtrunA17_Chr8g0390841	33.333	114	66	3	5	115	225	331	3.20e-13	64.7
MsaG014251	MtrunA17_Chr1g0208771	36.522	115	68	3	5	115	345	458	1.76e-15	70.9
MsaG014251	MtrunA17_Chr1g0208771	34.862	109	59	6	13	117	192	292	1.08e-12	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 22 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTAATCATATAGAAGA+TGG	0.505339	3:-69753957	MsaT014251.1:CDS
AAATTACTCCGTTGTTACGA+AGG	0.605850	3:-69753754	MsaT014251.1:CDS
ACAATGACCAACCCACGGAA+AGG	0.604310	3:+69753716	None:intergenic
ACTGATAAACAAGAAAGATT+TGG	0.358474	3:-69753647	MsaT014251.1:CDS
AGAATGTGATGATGCAGATT+AGG	0.440524	3:-69753795	MsaT014251.1:CDS
AGTGAGAGTGGACTGGAATC+AGG	0.399530	3:-69753688	MsaT014251.1:CDS
ATAGAACTTCATCAATGAAT+TGG	0.394729	3:-69754052	None:intergenic
ATATGGTCGTCGCCTTTCCG+TGG	0.567959	3:-69753728	MsaT014251.1:CDS
CATATCTGCCTTCGTAACAA+CGG	0.666214	3:+69753746	None:intergenic
CGTTGTTACGAAGGCAGATA+TGG	0.391650	3:-69753745	MsaT014251.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	69753612	69754060	69753612	ID=MsaG014251
Chr3	mRNA	69753612	69754060	69753612	ID=MsaT014251.1;Parent=MsaG014251
Chr3	exon	69753612	69753857	69753612	ID=MsaT014251.1.exon2;Parent=MsaT014251.1
Chr3	CDS	69753612	69753857	69753612	ID=cds.MsaT014251.1;Parent=MsaT014251.1
Chr3	exon	69753950	69754060	69753950	ID=MsaT014251.1.exon1;Parent=MsaT014251.1
Chr3	CDS	69753950	69754060	69753950	ID=cds.MsaT014251.1;Parent=MsaT014251.1

Gene Sequence	>MsaT014251.1 ATGAATTGGCCAAAGGATGCTAGAGCTCGAGAAGTAGCTGCGAAATTCATCTCAAGCAATCCTTTTTTCACAATTCTCATAAAACTTAATCATATAGAAGATGGTCAGCTGTCTGTACCAGATTTTAAAGGGGTTATTGAGAACAAGGACAAGAATGTGATGATGCAGATTAGGAAAAGGTCATGGAATGTGAAATTACTCCGTTGTTACGAAGGCAGATATGGTCGTCGCCTTTCCGTGGGTTGGTCATTGTTTGCAAGTGAGAGTGGACTGGAATCAGGAGATGTTTGTGTCTTTGAACTGATAAACAAGAAAGATTTGGTTTTTAAAGTTCATATTTTCAAAAGTGACGGTTAA
Protein sequence	>MsaT014251.1 MNWPKDARAREVAAKFISSNPFFTILIKLNHIEDGQLSVPDFKGVIENKDKNVMMQIRKRSWNVKLLRCYEGRYGRRLSVGWSLFASESGLESGDVCVFELINKKDLVFKVHIFKSDG*