AlfalfaGEDB | MsaG014273

M. sativa ssp. caerulea / MsaG014273

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014273	XP_003590850.2	73.708	658	103	4	1	597	1	649	0.0	918

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014273	sp\|Q9LUZ4\|C3H66_ARATH	46.895	612	256	16	21	592	2	584	1.06e-169	499

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014273	tr\|G7I4W5\|G7I4W5_MEDTR	73.708	658	103	4	1	597	1	649	0.0	918

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TFs/TRs:

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Gene ID	Type	Classification
MsaG014273	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014273	MtrunA17_Chr1g0187591	73.708	658	103	4	1	597	1	649	0.0	918
MsaG014273	MtrunA17_Chr3g0105131	68.293	574	113	7	1	574	1	505	0.0	729
MsaG014273	MtrunA17_Chr5g0430211	54.086	673	216	17	1	593	1	660	0.0	622
MsaG014273	MtrunA17_Chr3g0105101	69.977	433	70	5	37	469	29	401	0.0	572
MsaG014273	MtrunA17_Chr5g0437251	48.038	637	242	17	28	594	25	642	4.59e-178	520
MsaG014273	MtrunA17_Chr7g0257831	42.113	672	246	20	30	594	44	679	5.91e-147	442
MsaG014273	MtrunA17_Chr3g0113651	43.029	581	211	18	31	593	8	486	6.98e-135	403
MsaG014273	MtrunA17_Chr3g0088521	38.484	673	273	18	30	592	42	683	5.61e-128	392
MsaG014273	MtrunA17_Chr3g0105121	54.593	381	131	8	220	590	8	356	9.02e-120	359
MsaG014273	MtrunA17_Chr1g0171151	39.113	496	243	12	10	458	4	487	9.44e-101	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014273	AT5G58620.1	46.895	612	256	16	21	592	2	584	1.07e-170	499
MsaG014273	AT2G40140.2	45.574	610	259	18	1	592	1	555	3.26e-159	469
MsaG014273	AT2G40140.1	45.574	610	259	18	1	592	1	555	3.26e-159	469
MsaG014273	AT3G55980.1	45.108	603	276	15	1	598	1	553	1.03e-155	459
MsaG014273	AT3G55980.2	45.108	603	276	15	1	598	68	620	5.14e-155	460
MsaG014273	AT5G12850.1	41.653	617	264	19	25	557	34	638	1.84e-135	412
MsaG014273	AT2G41900.1	46.383	470	194	10	25	454	40	491	1.49e-129	397
MsaG014273	AT4G29190.1	51.163	172	62	2	210	374	68	224	2.96e-54	188
MsaG014273	AT2G19810.1	63.115	122	43	1	206	325	61	182	8.00e-53	185
MsaG014273	AT2G25900.2	58.333	132	55	0	214	345	83	214	1.43e-52	182

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Find 137 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAGTCATGTGCAA+CGG	0.635454	3:-70272258	None:intergenic
AAATTAGACTGGTCCATTCG+AGG	0.575964	3:-70270638	MsaT014273.1:CDS
AAATTCTATTGTTTGAGGAA+TGG	0.496946	3:+70270467	None:intergenic
AACACAAACCAGCAACTTTG+GGG	0.634243	3:-70270848	MsaT014273.1:CDS
AAGGATATCCCCAAAGTTGC+TGG	0.371241	3:+70270840	None:intergenic
AAGGCATCAACTCTGAATTG+TGG	0.688208	3:+70270785	None:intergenic
AAGGGCTTATTCTCATGATT+GGG	0.453702	3:-70271548	MsaT014273.1:CDS
AATAAGGCAGCAACCATAAG+AGG	0.478339	3:+70272012	None:intergenic
AATGATATTTCCTCGGATCA+CGG	0.552863	3:+70271485	None:intergenic
AATGGTTGTTGCATCAAACG+TGG	0.708040	3:-70270549	MsaT014273.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	70270472	70272268	70270472	ID=MsaG014273
Chr3	mRNA	70270472	70272268	70270472	ID=MsaT014273.1;Parent=MsaG014273
Chr3	exon	70270472	70272268	70270472	ID=MsaT014273.1.exon1;Parent=MsaT014273.1
Chr3	CDS	70270472	70272268	70270472	ID=cds.MsaT014273.1;Parent=MsaT014273.1

Gene Sequence

>MsaT014273.1

ATGTGCAACGGTGCCAATGGAAAACCTTGTCAAACTAGTTTGATTAAGGAAAATGAATATGGAAGACAAGAAGAGCTTCATCATAAGATTTCTGATTTGCTTGAGTTTTCAGCCAAAGATGATGTAATGGCTTTCACAGATGCTGTTGAAAAATATGATCATGATGTTGATGAGGTAGGGTTATGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGGCATATGAAGACAGGACACCTCTTATGGTTGCTGCCTTATTTGGAAGCAAGGGTGTGTTATCTTATATTCTTGGAACCGGTTGCGTCGATGTTAACCGAGCATGCGGCTCAGATAGGGCAACTGCTCTTCATTGTGCCGTTTCAGGTTGTTCTGCTGCTTCTGCTGAGGTTATTAAGCTTTTGCTTGATGCATCTGCAGATGGTAGTTCAGTTGATATGAACAGTAACCGGTGTAGCGACTTGATTGTCTCGGCTTCTAATAGTATTTTCGGTTCAGGGAAGAGGATACTACTTGAAGGGTTAGACGACGACGATTTTCTTAAGAAATTAGGTTTCCAAATGGTGGAGCAGCAACAAGATGTAGGTACACCTCGAACTGAGAAGAAAGATTATCCGATTGATCCATCGCTACCTGACATAAAAACTGGGATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGGCAGAGTGTCCATTTGTTCACCCGGGGGAAAATGCAAGGCGCCGTGATCCGAGGAAATATCATTACACATGTGTCCCTTGCCCCGAGTTTCGGAAAGGGTCATGCAGCAAAGAGGATGCTTGTGAATATGCACATGGTATTTTTGAATGTTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGGAACTGGATGCACCAGAAGGGTTTGCTTCTTCGCTCACAAACCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTTTGCCTTCGCCTACATCATATTCAAATTCACCTAGCGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCATCTTCTTTGATACAACCTACGCCGACACCACCTTTGACTCCATCCGCATCATCAACGCATGTGGCTGGAACCATGTGGCAGACTCAAATTCAGCTTCATGCTGCAGTCCCAACCCTTCAGATGCCGAAAAACAGATTGAAAACTGCACAGAATACTATAGATAACACTGAATGTGTCGAATTTGAAAATCACTTTATGCGGAAGCTATTGATGGAAGAGATACCAGGTCTCTCATTTCCTTCAAATAAGCTTGCAGGAGTTAACCCTACTAACCTTAAAAACACTTTTGGTTCATTGATACAATCTCCGACATCAATGCAGTCGTATCAGAACACAAACCAGCAACTTTGGGGATATCCTTCTAATCTTACCTCTTCAAATGTGAATGGATCACCACAATTCAGAGTTGATGCCTTTTCAATGCGTAGCCAGAGCTTTATTGAGCATAGCAGCATTGCAAGCTTTGATTCCGAGCTTCCTTCTGCTACCTCAGTTGCCGTGGAGCCTTCTACCTTCTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATTCGAGGCGATGAACTCAATAAAATGAGGAAATCTTATTCTTTCAGCTTTCGAAACAGAAGTAGCACTTCAACAATGGTTGTTGCATCAAACGTGGATGATCCTGATATATTTTTAAGCCAAGAATCTTGGGTTAATTCACTTGTGAAGGATGCTCCATTCCTCAAACAATAG

Protein sequence

>MsaT014273.1

MCNGANGKPCQTSLIKENEYGRQEELHHKISDLLEFSAKDDVMAFTDAVEKYDHDVDEVGLWYGRRVGSKEMAYEDRTPLMVAALFGSKGVLSYILGTGCVDVNRACGSDRATALHCAVSGCSAASAEVIKLLLDASADGSSVDMNSNRCSDLIVSASNSIFGSGKRILLEGLDDDDFLKKLGFQMVEQQQDVGTPRTEKKDYPIDPSLPDIKTGIYSTDEFRMFTFKVKPCSRAYSHDWAECPFVHPGENARRRDPRKYHYTCVPCPEFRKGSCSKEDACEYAHGIFECWLHPAQYRTRLCKDGTGCTRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTLSSPSSLIQPTPTPPLTPSASSTHVAGTMWQTQIQLHAAVPTLQMPKNRLKTAQNTIDNTECVEFENHFMRKLLMEEIPGLSFPSNKLAGVNPTNLKNTFGSLIQSPTSMQSYQNTNQQLWGYPSNLTSSNVNGSPQFRVDAFSMRSQSFIEHSSIASFDSELPSATSVAVEPSTFSGWGSPDGKLDWSIRGDELNKMRKSYSFSFRNRSSTSTMVVASNVDDPDIFLSQESWVNSLVKDAPFLKQ*