AlfalfaGEDB | MsaG014404

M. sativa ssp. caerulea / MsaG014404

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014404	XP_013460262.1	71.831	355	51	5	11	355	41	356	9.63e-164	472

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014404	sp\|P93755\|C3H30_ARATH	38.393	224	105	5	11	228	293	489	3.98e-36	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014404	tr\|A0A072UYW3\|A0A072UYW3_MEDTR	71.831	355	51	5	11	355	41	356	4.60e-164	472

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TFs/TRs:

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Gene ID	Type	Classification
MsaG014404	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000024	MsaG014404	0.867949	1.893750e-65	2.015679e-62
MsaG001046	MsaG014404	0.809687	2.856965e-50	4.842201e-48
MsaG001238	MsaG014404	0.835015	3.909594e-56	1.310189e-53
MsaG001403	MsaG014404	0.802148	1.080550e-48	1.533747e-46
MsaG001814	MsaG014404	0.812789	6.114076e-51	1.118116e-48
MsaG002201	MsaG014404	0.816982	7.258193e-52	1.475771e-49
MsaG003188	MsaG014404	0.875547	5.864292e-68	8.640536e-65
MsaG003672	MsaG014404	0.804837	3.012161e-49	4.549447e-47
MsaG004504	MsaG014404	0.812375	7.520320e-51	1.361248e-48
MsaG004806	MsaG014404	0.826227	5.417560e-54	1.409873e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014404	MtrunA17_Chr3g0105121	71.831	355	51	5	11	355	41	356	8.86e-168	472
MsaG014404	MtrunA17_Chr3g0105151	59.009	222	70	2	162	362	1	222	8.26e-76	234
MsaG014404	MtrunA17_Chr1g0187591	48.607	323	110	8	11	322	261	538	3.18e-72	236
MsaG014404	MtrunA17_Chr3g0105101	50.840	238	88	6	8	245	193	401	4.39e-63	206
MsaG014404	MtrunA17_Chr3g0105131	44.058	345	126	9	11	339	212	505	1.89e-62	207
MsaG014404	MtrunA17_Chr5g0430211	38.532	327	142	11	11	288	262	578	1.28e-46	168
MsaG014404	MtrunA17_Chr5g0437251	34.140	372	163	13	11	324	249	596	4.78e-39	147
MsaG014404	MtrunA17_Chr3g0105141	71.765	85	23	1	11	95	69	152	2.58e-37	132
MsaG014404	MtrunA17_Chr7g0257831	34.959	246	115	6	11	235	296	517	3.13e-36	139
MsaG014404	MtrunA17_Chr3g0088521	31.988	322	161	9	11	297	296	594	1.62e-32	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014404	AT2G41900.1	38.393	224	105	5	11	228	293	489	4.04e-37	142
MsaG014404	AT5G58620.1	35.583	326	165	15	11	322	241	535	2.30e-36	139
MsaG014404	AT2G40140.2	38.710	248	104	9	11	253	246	450	2.19e-35	136
MsaG014404	AT2G40140.1	38.710	248	104	9	11	253	246	450	2.19e-35	136
MsaG014404	AT5G12850.1	38.462	234	116	9	11	235	289	503	5.33e-33	130
MsaG014404	AT3G55980.1	34.472	322	142	16	11	324	243	503	1.10e-31	125
MsaG014404	AT3G55980.2	34.161	322	143	15	11	324	310	570	1.53e-31	125
MsaG014404	AT4G29190.1	41.026	117	68	1	9	125	109	224	9.52e-24	100
MsaG014404	AT1G03790.1	51.685	89	40	1	9	94	112	200	1.72e-23	100
MsaG014404	AT5G44260.1	55.263	76	34	0	9	84	90	165	1.75e-23	100

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Find 95 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGCCTTCAAGGTTAGT+AGG	0.408517	3:-72607940	None:intergenic
AAATATAGATCATGCAGTAA+AGG	0.479750	3:+72607367	MsaT014404.1:CDS
AAATGTCCCTTTGCTCATCA+TGG	0.414986	3:+72607278	None:intergenic
AACTGGTACTAGCATTCAAC+GGG	0.465209	3:-72607525	None:intergenic
AAGGATATATCTGAAGTTGT+TGG	0.532786	3:-72608014	None:intergenic
AATATAGATCATGCAGTAAA+GGG	0.387652	3:+72607368	MsaT014404.1:CDS
AATCTCCGACAGCAATGCAG+GGG	0.691632	3:+72607977	MsaT014404.1:CDS
AATCTGTTGCTCGGCATCTG+AGG	0.505565	3:-72607805	None:intergenic
AATCTGTTGCTCGGCATCTG+AGG	0.528491	3:-72607715	None:intergenic
AATGAACTTGTGAAGGAAGA+TGG	0.505957	3:+72608333	MsaT014404.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	72607280	72608368	72607280	ID=MsaG014404
Chr3	mRNA	72607280	72608368	72607280	ID=MsaT014404.1;Parent=MsaG014404
Chr3	exon	72607280	72608368	72607280	ID=MsaT014404.1.exon1;Parent=MsaT014404.1
Chr3	CDS	72607280	72608368	72607280	ID=cds.MsaT014404.1;Parent=MsaT014404.1

Gene Sequence

>MsaT014404.1

ATGTCCCTTTGCTCATCATGGGGAAAGCATAAACGCCGTGATCCAAAGCAATATAATTACAGATGTGCCCATTGTAATGAATTTCAGAAATATAGATCATGCAGTAAAGGGGATGAATGTCAATATGCACATGGTGTTCTTGAGTCCGGGCTGCATCCTAGTCGATACAGAACAACGCTTTGCAATAATGGAACTACATGCACAAGAGAAGTTTGCTTCTTTGCTCACAAACCTGAGGAACTTCGCCCGTTGAATGCTAGTACCAGTTCTGCTTTGCCTTCACATACATTATATTCAAATTCACCAAGTGCTTCTGCAATGTATACTTTCACATTGCCTTCATCGATGCCGCCTTGGACACCGTCTGCAATATCATATCCTGCAGGAAGAACCATGTGGCCGACTCCGACTCAGAATCGTACTACAGTCCCTACACCTCAGATGCCGAGCAACAGATTGATATCATATCCTGCAGAAAGAACCATGTGGCCGACTCCGACTCAGATTAGTACTACAGTCCCTACACCTCAGATGCCGAGCAACAGATTGAATACTGCATTGAATGCTAGAGATAATACTCATCTGGACATGAAATTTTTCGAATATCACAATATGCCGAATCCAATGATAGAAGGGTCAAGTAGGCTTGCTGGAGTGAATCCTACTAACCTTGAAGGCTATTTTGGGCCATCGATACAATCTCCGACAGCAATGCAGGGGTATCAGAATGTGAACCAACAACTTCAGATATATCCTTCTCACCTTACCAATTCTAATGTGGTTAGATCACAACAGTTCAGGGGTGATCCATTTTTTAATTCAAGATATGATGCCCTTTCGAGGCAGAGCCAGAACTTTATCGAGAGCAACAGCATGGCAAGCTCCAAGCTTCCAGATGCTACCTCAGTTGCATTGGAGCCTTCAACTTCCTTGTCCAGTTGGCGCTCCCGTGATAGAAAATTAGAATTGGGTGATACTAGCAACACTTCAACAATGGCTGCTACATCAAATGTTGATGATCAGGATGTATTATTAAGATATGAAGGTATGGTTAATGAACTTGTGAAGGAAGATGGTCCAACATTGTAA

Protein sequence

>MsaT014404.1

MSLCSSWGKHKRRDPKQYNYRCAHCNEFQKYRSCSKGDECQYAHGVLESGLHPSRYRTTLCNNGTTCTREVCFFAHKPEELRPLNASTSSALPSHTLYSNSPSASAMYTFTLPSSMPPWTPSAISYPAGRTMWPTPTQNRTTVPTPQMPSNRLISYPAERTMWPTPTQISTTVPTPQMPSNRLNTALNARDNTHLDMKFFEYHNMPNPMIEGSSRLAGVNPTNLEGYFGPSIQSPTAMQGYQNVNQQLQIYPSHLTNSNVVRSQQFRGDPFFNSRYDALSRQSQNFIESNSMASSKLPDATSVALEPSTSLSSWRSRDRKLELGDTSNTSTMAATSNVDDQDVLLRYEGMVNELVKEDGPTL*