AlfalfaGEDB | MsaG014448

M. sativa ssp. caerulea / MsaG014448

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07716.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014448	XP_024634655.1	69.178	146	33	3	89	231	56	192	3.54e-54	183

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014448	sp\|F4IN23\|BZP34_ARATH	41.053	95	56	0	125	219	186	280	7.47e-14	72.8

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014448	tr\|A0A1S3E8J2\|A0A1S3E8J2_CICAR	61.321	106	41	0	123	228	148	253	5.87e-31	125

TFs/TRs:

Gene ID	Type	Classification
MsaG014448	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000705	MsaG014448	0.816487	9.363138e-52	1.879605e-49
MsaG001092	MsaG014448	0.804751	3.139149e-49	4.731684e-47
MsaG004445	MsaG014448	0.805925	1.786429e-49	2.767366e-47
MsaG004455	MsaG014448	0.817256	6.304222e-52	1.290897e-49
MsaG006284	MsaG014448	0.839252	3.263542e-57	1.244459e-54
MsaG010113	MsaG014448	0.806602	1.287860e-49	2.027362e-47
MsaG010807	MsaG014448	0.820965	9.110145e-53	2.055551e-50
MsaG011213	MsaG014448	0.802264	1.022836e-48	1.455717e-46
MsaG011678	MsaG014448	0.813293	4.744560e-51	8.786445e-49
MsaG012026	MsaG014448	0.812403	7.417008e-51	1.343488e-48
MsaG012396	MsaG014448	0.803302	6.260872e-49	9.125523e-47
MsaG044869	MsaG014448	0.826630	4.347919e-54	1.144259e-51
MsaG046278	MsaG014448	0.825922	6.397286e-54	1.650908e-51
MsaG002644	MsaG014448	0.803449	5.837744e-49	8.537866e-47
MsaG014448	MsaG013395	0.801902	1.213556e-48	1.712961e-46
MsaG014448	MsaG018949	0.809466	3.185170e-50	5.369931e-48
MsaG014448	MsaG020111	0.812270	7.928402e-51	1.431299e-48
MsaG014448	MsaG031416	0.814004	3.315037e-51	6.249751e-49
MsaG014448	MsaG030749	0.806337	1.463836e-49	2.289965e-47
MsaG014448	MsaG044124	0.805119	2.631042e-49	3.999874e-47
MsaG016372	MsaG014448	0.800665	2.167635e-48	2.975205e-46
MsaG017558	MsaG014448	0.800253	2.627768e-48	3.573166e-46
MsaG017561	MsaG014448	0.837991	6.885355e-57	2.524550e-54
MsaG022579	MsaG014448	0.803162	6.689634e-49	9.719206e-47
MsaG024877	MsaG014448	0.804990	2.799578e-49	4.243312e-47
MsaG026280	MsaG014448	0.807759	7.346480e-50	1.188630e-47
MsaG026826	MsaG014448	0.816780	8.053517e-52	1.628946e-49
MsaG026901	MsaG014448	0.831062	3.722930e-55	1.110695e-52
MsaG029621	MsaG014448	0.816949	7.381304e-52	1.499531e-49
MsaG033531	MsaG014448	0.818242	3.786030e-52	7.951676e-50
MsaG033589	MsaG014448	0.845345	8.076339e-59	3.742949e-56
MsaG033651	MsaG014448	0.810326	2.084503e-50	3.588211e-48
MsaG036580	MsaG014448	0.810177	2.244174e-50	3.848875e-48
MsaG038522	MsaG014448	0.805784	1.911149e-49	2.950861e-47
MsaG039823	MsaG014448	0.829597	8.455800e-55	2.419174e-52
MsaG041854	MsaG014448	0.807799	7.206072e-50	1.167031e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014448	MtrunA17_Chr4g0040891	41.053	95	56	0	125	219	194	288	6.69e-15	72.8
MsaG014448	MtrunA17_Chr2g0325131	40.000	95	57	0	125	219	191	285	5.59e-14	70.1
MsaG014448	MtrunA17_Chr2g0316551	35.398	113	68	1	107	219	195	302	1.40e-13	68.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014448	AT2G42380.2	41.053	95	56	0	125	219	186	280	7.59e-15	72.8
MsaG014448	AT5G07160.1	42.105	114	65	1	104	217	28	140	1.44e-14	69.3
MsaG014448	AT3G58120.1	36.441	118	65	1	102	219	189	296	1.53e-14	72.0
MsaG014448	AT2G42380.5	41.772	79	46	0	125	203	186	264	5.01e-12	64.3
MsaG014448	AT3G58120.2	36.275	102	55	1	102	203	189	280	5.60e-12	64.3

Find 32 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGCAATTTCAAGTCTTAAT+TGG	0.217186	3:-73346224	None:intergenic
ACTCGATTATATTGCAGATT+TGG	0.254957	3:+73345569	MsaT014448.1:CDS
CTGCTCGGGATTCACGGTTT+TGG	0.270588	3:-73339283	None:intergenic
ATCTGCTTGGATCACAATTT+AGG	0.298827	3:+73339314	MsaT014448.1:CDS
GAATAGGCTGAGGGAGCTTC+AGG	0.311474	3:+73346388	MsaT014448.1:CDS
GCACTGCTCATTAGCTTAGT+TGG	0.388270	3:-73339083	None:intergenic
TGCTTGTTCCTTCAACATCA+TGG	0.393720	3:-73339151	None:intergenic
ATAAGAAAGCTGAGGTGAAT+AGG	0.428995	3:+73346372	MsaT014448.1:CDS
TATTGCAGATTTGGAACAGA+TGG	0.461511	3:+73345578	MsaT014448.1:CDS
TTTCATAGGCTTCAACTTGT+GGG	0.474934	3:-73346170	None:intergenic
AAATTAACACCAGCAGCATC+AGG	0.482919	3:-73339248	None:intergenic
CTTCAAACCCTCCTCTTCCA+TGG	0.485844	3:+73339058	MsaT014448.1:CDS
AAGAAGAGCCATGATGTTGA+AGG	0.491822	3:+73339143	MsaT014448.1:CDS
AGCAGGAAAATCTATCTGCT+TGG	0.498692	3:+73339301	MsaT014448.1:CDS
TTTGCAACTCCTGATGCTGC+TGG	0.512964	3:+73339239	MsaT014448.1:CDS
CTTAGTTGGAGCCATGGAAG+AGG	0.515801	3:-73339069	None:intergenic
CAATTTCAAGTCTTAATTGG+TGG	0.516892	3:-73346221	None:intergenic
AAGCTGAGGTGAATAGGCTG+AGG	0.536145	3:+73346378	MsaT014448.1:CDS
CATTAGCTTAGTTGGAGCCA+TGG	0.548196	3:-73339075	None:intergenic
CTAGTTCATCCTTTCAAGTG+TGG	0.562525	3:+73339105	MsaT014448.1:CDS
AGGCTTCAACTTGTGGGCGA+AGG	0.567374	3:-73346164	None:intergenic
AAGCAGCAAGATCAACATAG+TGG	0.577317	3:+73339169	MsaT014448.1:CDS
AGTTGGAGCCATGGAAGAGG+AGG	0.583574	3:-73339066	None:intergenic
GTTGGAGCCATGGAAGAGGA+GGG	0.592854	3:-73339065	None:intergenic
CAAAACCGTGAATCCCGAGC+AGG	0.606708	3:+73339284	MsaT014448.1:CDS
AAACAAAGGATACTTCAAGA+AGG	0.610927	3:+73346255	MsaT014448.1:CDS
TTTCTGAAGCACAAAACAAG+AGG	0.611292	3:+73346420	MsaT014448.1:CDS
AGAGGAGGGTTTGAAGCTCA+CGG	0.618456	3:-73339051	None:intergenic
AGCTGAGGTGAATAGGCTGA+GGG	0.623733	3:+73346379	MsaT014448.1:CDS
GATTGAGAATAAGAAAGCTG+AGG	0.643843	3:+73346364	MsaT014448.1:CDS
AAGCCTATGAAAATCAGCAG+CGG	0.717215	3:+73346181	MsaT014448.1:CDS
GGAGGGTTTGAAGCTCACGG+TGG	0.736332	3:-73339048	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	73338978	73346552	73338978	ID=MsaG014448
Chr3	mRNA	73338978	73346552	73338978	ID=MsaT014448.1;Parent=MsaG014448
Chr3	exon	73338978	73339369	73338978	ID=MsaT014448.1.exon1;Parent=MsaT014448.1
Chr3	CDS	73338978	73339369	73338978	ID=cds.MsaT014448.1;Parent=MsaT014448.1
Chr3	exon	73345524	73345614	73345524	ID=MsaT014448.1.exon2;Parent=MsaT014448.1
Chr3	CDS	73345524	73345614	73345524	ID=cds.MsaT014448.1;Parent=MsaT014448.1
Chr3	exon	73346150	73346276	73346150	ID=MsaT014448.1.exon3;Parent=MsaT014448.1
Chr3	CDS	73346150	73346276	73346150	ID=cds.MsaT014448.1;Parent=MsaT014448.1
Chr3	exon	73346360	73346441	73346360	ID=MsaT014448.1.exon4;Parent=MsaT014448.1
Chr3	CDS	73346360	73346441	73346360	ID=cds.MsaT014448.1;Parent=MsaT014448.1
Chr3	exon	73346540	73346552	73346540	ID=MsaT014448.1.exon5;Parent=MsaT014448.1
Chr3	CDS	73346540	73346552	73346540	ID=cds.MsaT014448.1;Parent=MsaT014448.1

Gene Sequence

>MsaT014448.1

ATGCGAGAAGAAAATGCAAAGAAAATCAATTTTCTGAGCTCAAAAAAGGATAAGTTATGTGCTGTGAAATCCACCGTGAGCTTCAAACCCTCCTCTTCCATGGCTCCAACTAAGCTAATGAGCAGTGCTAGTTCATCCTTTCAAGTGTGGAAAAATGCTTTACAAAAGAAGAGCCATGATGTTGAAGGAACAAGCAGCAAGATCAACATAGTGGAAAACCCTATTCTTGATCAAGCTAAAAAGAATATCATCAATCTTAGCTTTGCAACTCCTGATGCTGCTGGTGTTAATTTAATTAACACCAACCAAAACCGTGAATCCCGAGCAGGAAAATCTATCTGCTTGGATCACAATTTAGGCAAAACCGAAGAAGATCCAAAAATACTTAAGCGGATTGAAGCAAATCGAGCTGCTGCACAAAAATCGAGATTGAAAAAACTCGATTATATTGCAGATTTGGAACAGATGGAAAAATATTTGCAGGCTGAGTTATCTTTCCTTCGCCCACAAGTTGAAGCCTATGAAAATCAGCAGCGGTTGTTGAGTCTTGAACACCACCAATTAAGACTTGAAATTGCTGTAAGAGAAAAACAAAGGATACTTCAAGAAGTTGAGATTGAGAATAAGAAAGCTGAGGTGAATAGGCTGAGGGAGCTTCAGGAGAAACTAGTTTCTGAAGCACAAAACAAGAGGTTTGTGTATTAA

Protein sequence

>MsaT014448.1

MREENAKKINFLSSKKDKLCAVKSTVSFKPSSSMAPTKLMSSASSSFQVWKNALQKKSHDVEGTSSKINIVENPILDQAKKNIINLSFATPDAAGVNLINTNQNRESRAGKSICLDHNLGKTEEDPKILKRIEANRAAAQKSRLKKLDYIADLEQMEKYLQAELSFLRPQVEAYENQQRLLSLEHHQLRLEIAVREKQRILQEVEIENKKAEVNRLRELQEKLVSEAQNKRFVY*