AlfalfaGEDB | MsaG014458

M. sativa ssp. caerulea / MsaG014458

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014458	XP_013460339.2	92.398	171	13	0	1	171	1	171	1.53e-111	324

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014458	sp\|Q9FJK3\|AGL80_ARATH	50.955	157	72	3	1	155	1	154	3.85e-39	138

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014458	tr\|A0A072UL53\|A0A072UL53_MEDTR	90.058	171	17	0	1	171	1	171	5.92e-107	312

TFs/TRs:

Gene ID	Type	Classification
MsaG014458	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014458	MtrunA17_Chr3g0105791	93.007	143	10	0	29	171	1	143	2.39e-96	275
MsaG014458	MtrunA17_Chr4g0031421	90.210	143	14	0	29	171	1	143	1.40e-91	263
MsaG014458	MtrunA17_Chr3g0107461	78.261	161	35	0	1	161	1	161	4.37e-89	257
MsaG014458	MtrunA17_Chr3g0107381	53.179	173	76	3	1	170	1	171	9.15e-58	180
MsaG014458	MtrunA17_Chr2g0283941	46.154	169	91	0	1	169	1	169	3.99e-49	159
MsaG014458	MtrunA17_Chr3g0110131	50.000	158	78	1	1	158	1	157	1.99e-44	146
MsaG014458	MtrunA17_Chr5g0432691	41.875	160	86	2	1	157	1	156	9.98e-42	137
MsaG014458	MtrunA17_Chr4g0014321	40.000	165	99	0	1	165	1	165	4.34e-41	137
MsaG014458	MtrunA17_Chr8g0351751	41.317	167	96	1	1	165	1	167	5.26e-40	135
MsaG014458	MtrunA17_Chr2g0296861	45.806	155	83	1	1	155	1	154	9.46e-39	129
MsaG014458	MtrunA17_Chr3g0106501	47.407	135	71	0	29	163	1	135	2.09e-38	128
MsaG014458	MtrunA17_Chr4g0014031	42.424	165	95	0	1	165	1	165	5.40e-37	127
MsaG014458	MtrunA17_Chr5g0420351	41.772	158	90	2	1	158	1	156	8.38e-37	124
MsaG014458	MtrunA17_Chr1g0188681	42.138	159	90	2	1	159	1	157	8.51e-35	119
MsaG014458	MtrunA17_Chr4g0013041	36.842	171	105	2	1	170	1	169	1.03e-34	120
MsaG014458	MtrunA17_Chr4g0014131	41.818	165	96	0	1	165	1	165	1.13e-34	121
MsaG014458	MtrunA17_Chr3g0107331	40.000	155	92	1	3	157	2	155	8.61e-34	117
MsaG014458	MtrunA17_Chr3g0106421	41.844	141	82	0	29	169	1	141	1.38e-33	118
MsaG014458	MtrunA17_Chr2g0296831	48.718	117	60	0	1	117	1	117	1.72e-32	112
MsaG014458	MtrunA17_Chr4g0014121	38.994	159	97	0	1	159	29	187	1.53e-31	112
MsaG014458	MtrunA17_Chr1g0197461	39.474	152	90	2	3	154	2	151	2.44e-31	110
MsaG014458	MtrunA17_Chr4g0012761	41.509	159	91	2	1	159	1	157	2.62e-31	110
MsaG014458	MtrunA17_Chr1g0193311	41.139	158	91	2	1	158	1	156	2.63e-31	110
MsaG014458	MtrunA17_Chr1g0188661	41.509	159	91	2	1	159	1	157	5.77e-31	109
MsaG014458	MtrunA17_Chr3g0107361	38.710	155	94	1	3	157	2	155	6.30e-31	109
MsaG014458	MtrunA17_Chr7g0218151	40.881	159	92	2	1	159	1	157	1.78e-30	108
MsaG014458	MtrunA17_Chr1g0188651	40.994	161	91	2	1	161	1	157	5.59e-30	107
MsaG014458	MtrunA17_Chr3g0107351	37.419	155	96	1	3	157	2	155	3.12e-29	105
MsaG014458	MtrunA17_Chr1g0197321	37.013	154	96	1	1	154	1	153	3.86e-28	102
MsaG014458	MtrunA17_Chr3g0107341	37.419	155	96	1	3	157	2	155	4.94e-28	102
MsaG014458	MtrunA17_Chr1g0197261	36.538	156	93	4	1	154	1	152	1.60e-26	98.6
MsaG014458	MtrunA17_Chr4g0008701	31.288	163	95	5	1	154	1	155	7.56e-17	77.0
MsaG014458	MtrunA17_Chr7g0267601	31.034	145	82	4	1	139	1	133	2.42e-16	75.5
MsaG014458	MtrunA17_Chr3g0128721	32.323	99	67	0	5	103	8	106	6.00e-14	68.6
MsaG014458	MtrunA17_Chr6g0457851	26.875	160	102	4	1	154	11	161	8.76e-14	67.8
MsaG014458	MtrunA17_Chr6g0449851	28.750	160	99	4	1	154	1	151	4.02e-12	63.2
MsaG014458	MtrunA17_Chr1g0212151	29.915	117	75	3	1	111	1	116	5.70e-12	62.8
MsaG014458	MtrunA17_Chr6g0449861	28.750	160	99	4	1	154	9	159	6.57e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014458	AT5G48670.1	50.955	157	72	3	1	155	1	154	3.91e-40	138
MsaG014458	AT3G05860.2	42.763	152	82	2	1	150	1	149	1.55e-32	115
MsaG014458	AT3G05860.3	39.535	172	99	2	1	170	1	169	3.93e-32	115
MsaG014458	AT3G05860.1	39.535	172	99	2	1	170	1	169	5.15e-32	115
MsaG014458	AT1G65330.1	41.176	153	89	1	3	155	2	153	1.59e-31	115
MsaG014458	AT1G65300.1	39.623	159	94	2	5	163	4	160	5.36e-29	108
MsaG014458	AT5G27810.1	52.809	89	42	0	29	117	1	89	5.59e-29	103
MsaG014458	AT5G26650.1	36.306	157	91	2	5	157	3	154	5.36e-27	104
MsaG014458	AT1G31630.1	37.333	150	90	3	3	151	2	148	2.77e-26	102
MsaG014458	AT5G27960.1	44.954	109	60	0	5	113	3	111	3.07e-26	102
MsaG014458	AT5G26630.1	37.662	154	95	1	1	154	1	153	4.72e-25	96.7
MsaG014458	AT1G22590.2	39.823	113	68	0	1	113	1	113	5.18e-25	95.1
MsaG014458	AT1G31640.1	38.365	159	84	4	3	155	2	152	9.66e-25	99.8
MsaG014458	AT2G28700.1	39.806	103	62	0	1	103	1	103	1.48e-19	84.0
MsaG014458	AT5G06500.1	36.036	111	67	1	1	111	1	107	2.79e-19	82.0
MsaG014458	AT2G40210.1	36.634	101	64	0	1	101	1	101	6.34e-15	71.6
MsaG014458	AT5G26580.1	37.255	102	50	1	1	102	1	88	8.39e-14	68.2
MsaG014458	AT5G55690.1	36.275	102	58	3	1	95	1	102	5.14e-11	60.1
MsaG014458	AT5G55690.2	36.275	102	58	3	1	95	1	102	5.14e-11	60.1

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTGGTCATTTCCATCTTTC+TGG	0.077675	3:+73487095	None:intergenic
ATTCAAACCATAGAATTTAA+TGG	0.173791	3:-73487057	MsaT014458.1:CDS
CGAATTTCCATTAAATTCTA+TGG	0.218755	3:+73487050	None:intergenic
GAGGTTTGGCCATCAGATTC+AGG	0.258145	3:-73487252	MsaT014458.1:CDS
CGCTACCATGACTAGAAATA+AGG	0.322931	3:-73487649	None:intergenic
AAAATCATTAAGATCAGATT+TGG	0.348340	3:+73487023	None:intergenic
TCTTCTTGAGGCAAAACATT+AGG	0.355934	3:-73487155	MsaT014458.1:CDS
AATATAATGATCAATGATAT+TGG	0.368342	3:+73487077	None:intergenic
ATCAAGAGGAGGTTGGAAAT+GGG	0.388178	3:-73486936	MsaT014458.1:CDS
GATCAAGAGGAGGTTGGAAA+TGG	0.411170	3:-73486937	MsaT014458.1:CDS
GAAGTGTGATATCTAGGTTT+AGG	0.426765	3:-73487224	MsaT014458.1:CDS
GGGTCAGAAGTGTGATATCT+AGG	0.436600	3:-73487230	MsaT014458.1:CDS
TCTAGGTTTAGGAGTTTGCC+TGG	0.445921	3:-73487213	MsaT014458.1:CDS
AGAATTTGAAGGAGGTTGAT+CGG	0.478161	3:-73486984	MsaT014458.1:CDS
ACAACCCTCGAGTAGAGGTT+TGG	0.487846	3:-73487266	MsaT014458.1:CDS
TCAAGAGGAGGTTGGAAATG+GGG	0.500358	3:-73486935	MsaT014458.1:CDS
TGATCGGAAGATGAAAGAAA+TGG	0.504501	3:-73486968	MsaT014458.1:CDS
AGGTTTGGCCATCAGATTCA+GGG	0.511068	3:-73487251	MsaT014458.1:CDS
ACGAGCAGTTGAAGAAGCAA+AGG	0.512962	3:-73487125	MsaT014458.1:CDS
AAGGGAGGAAACCAGAAAGA+TGG	0.513695	3:-73487106	MsaT014458.1:CDS
GGAGGATAACATACAGAAAG+AGG	0.518632	3:-73487593	MsaT014458.1:CDS
TTTCACCTTATTTCTAGTCA+TGG	0.525434	3:+73487644	None:intergenic
ATCAAAGATCAAGAGGAGGT+TGG	0.551560	3:-73486943	MsaT014458.1:CDS
GAGGAGGTTGGAAATGGGGT+GGG	0.563227	3:-73486931	MsaT014458.1:CDS
AGAGGAGGTTGGAAATGGGG+TGG	0.565910	3:-73486932	MsaT014458.1:CDS
CGAGCAGTTGAAGAAGCAAA+GGG	0.580872	3:-73487124	MsaT014458.1:CDS
ACATGCTTCGACTCCACATA+GGG	0.581479	3:+73487308	None:intergenic
AATGGCAATCAAAGATCAAG+AGG	0.588543	3:-73486950	MsaT014458.1:CDS
TATTGATGAGAATTTGAAGG+AGG	0.592173	3:-73486992	MsaT014458.1:CDS
CACATGCTTCGACTCCACAT+AGG	0.603214	3:+73487307	None:intergenic
AATGAAATTAGCACCCTATG+TGG	0.604835	3:-73487321	MsaT014458.1:CDS
GCAAAACAACCCTCGAGTAG+AGG	0.609086	3:-73487271	MsaT014458.1:CDS
ACATAACATGTGACTCGAAG+AGG	0.616371	3:-73487614	MsaT014458.1:CDS
CTTCTGACCCCTGAATCTGA+TGG	0.624024	3:+73487243	None:intergenic
GATGGCCAAACCTCTACTCG+AGG	0.634480	3:+73487261	None:intergenic
GGCAATCAAAGATCAAGAGG+AGG	0.656411	3:-73486947	MsaT014458.1:CDS
GGTTTGGCCATCAGATTCAG+GGG	0.657992	3:-73487250	MsaT014458.1:CDS
ATGGCCAAACCTCTACTCGA+GGG	0.659257	3:+73487262	None:intergenic
TAACATGTGACTCGAAGAGG+AGG	0.659370	3:-73487611	MsaT014458.1:CDS
GCAGTTGAAGAAGCAAAGGG+AGG	0.693727	3:-73487121	MsaT014458.1:CDS
TGGATCAGGAGGTCTTCTTG+AGG	0.700337	3:-73487167	MsaT014458.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	73486924	73487664	73486924	ID=MsaG014458
Chr3	mRNA	73486924	73487664	73486924	ID=MsaT014458.1;Parent=MsaG014458
Chr3	exon	73486924	73487360	73486924	ID=MsaT014458.1.exon2;Parent=MsaT014458.1
Chr3	CDS	73486924	73487360	73486924	ID=cds.MsaT014458.1;Parent=MsaT014458.1
Chr3	exon	73487586	73487664	73487586	ID=MsaT014458.1.exon1;Parent=MsaT014458.1
Chr3	CDS	73487586	73487664	73487586	ID=cds.MsaT014458.1;Parent=MsaT014458.1

Gene Sequence

>MsaT014458.1

ATGACTAGAAATAAGGTGAAACTAGCATACATAACATGTGACTCGAAGAGGAGGATAACATACAGAAAGAGGAAAAATGGAATTATGAAGAAGATTAATGAAATTAGCACCCTATGTGGAGTCGAAGCATGTGCAATAATTTCAGAGCAAAACAACCCTCGAGTAGAGGTTTGGCCATCAGATTCAGGGGTCAGAAGTGTGATATCTAGGTTTAGGAGTTTGCCTGGACATGAACAAAGTAAAAAGATGGTGGATCAGGAGGTCTTCTTGAGGCAAAACATTAGGAAAGTCTACGAGCAGTTGAAGAAGCAAAGGGAGGAAACCAGAAAGATGGAAATGACCAATATCATTGATCATTATATTCAAACCATAGAATTTAATGGAAATTCGATGACCAAATCTGATCTTAATGATTTTTCATCTTTTATTGATGAGAATTTGAAGGAGGTTGATCGGAAGATGAAAGAAATGGCAATCAAAGATCAAGAGGAGGTTGGAAATGGGGTGGGATTATGA

Protein sequence

>MsaT014458.1

MTRNKVKLAYITCDSKRRITYRKRKNGIMKKINEISTLCGVEACAIISEQNNPRVEVWPSDSGVRSVISRFRSLPGHEQSKKMVDQEVFLRQNIRKVYEQLKKQREETRKMEMTNIIDHYIQTIEFNGNSMTKSDLNDFSSFIDENLKEVDRKMKEMAIKDQEEVGNGVGL*