AlfalfaGEDB | MsaG014501

M. sativa ssp. caerulea / MsaG014501

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014501	XP_024634662.1	79.630	216	14	1	1	186	1	216	3.21e-106	313

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014501	sp\|Q9FJK3\|AGL80_ARATH	34.783	138	89	1	6	143	34	170	2.51e-18	84.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014501	tr\|A0A396IQ30\|A0A396IQ30_MEDTR	79.630	216	14	1	1	186	1	216	1.53e-106	313

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TFs/TRs:

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Gene ID	Type	Classification
MsaG014501	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014501	MtrunA17_Chr3g0106421	79.630	216	14	1	1	186	1	216	2.95e-110	313
MsaG014501	MtrunA17_Chr2g0283941	37.619	210	100	2	1	179	29	238	4.02e-41	139
MsaG014501	MtrunA17_Chr3g0106501	48.889	135	69	0	1	135	1	135	6.75e-39	130
MsaG014501	MtrunA17_Chr3g0107461	46.512	129	69	0	1	129	29	157	1.29e-33	117
MsaG014501	MtrunA17_Chr4g0031421	40.136	147	83	1	1	147	1	142	3.84e-30	107
MsaG014501	MtrunA17_Chr3g0107381	36.471	170	98	3	1	166	29	192	1.20e-29	108
MsaG014501	MtrunA17_Chr3g0105791	40.441	136	81	0	1	136	1	136	2.88e-28	103
MsaG014501	MtrunA17_Chr3g0110131	41.129	124	72	1	4	127	32	154	5.18e-28	105
MsaG014501	MtrunA17_Chr4g0014321	32.836	201	114	3	1	181	29	228	3.88e-27	102
MsaG014501	MtrunA17_Chr4g0013041	34.973	183	113	3	2	183	28	205	1.48e-25	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014501	AT5G48670.1	34.783	138	89	1	6	143	34	170	2.56e-19	84.0
MsaG014501	AT5G27810.1	42.697	89	51	0	1	89	1	89	2.60e-17	74.3
MsaG014501	AT1G65300.1	29.775	178	119	2	2	174	29	205	6.43e-17	76.6
MsaG014501	AT3G05860.3	32.353	136	87	2	1	134	29	161	4.24e-15	71.2
MsaG014501	AT3G05860.1	32.353	136	87	2	1	134	29	161	5.37e-15	71.2
MsaG014501	AT3G05860.2	32.353	136	87	2	1	134	29	161	6.55e-15	70.1
MsaG014501	AT5G26630.1	30.159	126	83	2	4	127	32	154	1.76e-13	66.6
MsaG014501	AT5G26650.1	32.237	152	94	4	2	144	28	179	2.41e-13	67.4
MsaG014501	AT1G65330.1	38.202	89	55	0	1	89	28	116	3.32e-13	66.6
MsaG014501	AT5G27960.1	32.237	152	94	4	2	144	28	179	5.49e-13	66.2

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Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAAATCATCAAATGG+TGG	0.629108	3:-74050880	None:intergenic
AAGTGATGAGCAACTACCTA+TGG	0.489610	3:+74050846	MsaT014501.1:CDS
AATCATCAAATGGTGGCATG+AGG	0.619303	3:-74050873	None:intergenic
ACACGTTCTAGTCCTATCGC+GGG	0.647206	3:-74050379	None:intergenic
ACCCTTTGTGGAGTAGAGGT+AGG	0.653228	3:+74050310	MsaT014501.1:CDS
ACCTACCTCTACTCCACAAA+GGG	0.515797	3:-74050311	None:intergenic
AGATAGATCCAAATCCATTT+GGG	0.447437	3:-74050912	None:intergenic
AGGAGATATGCAGGATAACA+TGG	0.513708	3:+74050771	MsaT014501.1:intron
AGTGAATTGAGCACCCTTTG+TGG	0.521846	3:+74050298	MsaT014501.1:CDS
ATAATCTATGGTGAAAATCA+TGG	0.511237	3:+74050337	MsaT014501.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	74050286	74050936	74050286	ID=MsaG014501
Chr3	mRNA	74050286	74050936	74050286	ID=MsaT014501.1;Parent=MsaG014501
Chr3	exon	74050286	74050693	74050286	ID=MsaT014501.1.exon1;Parent=MsaT014501.1
Chr3	CDS	74050286	74050693	74050286	ID=cds.MsaT014501.1;Parent=MsaT014501.1
Chr3	exon	74050784	74050936	74050784	ID=MsaT014501.1.exon2;Parent=MsaT014501.1
Chr3	CDS	74050784	74050936	74050784	ID=cds.MsaT014501.1;Parent=MsaT014501.1

Gene Sequence

>MsaT014501.1

ATGAAGAAGGCTAGTGAATTGAGCACCCTTTGTGGAGTAGAGGTAGGTGTAATAATCTATGGTGAAAATCATGGTCAAGCAGAAGTTTGGCCACCCGCGATAGGACTAGAACGTGTGTTGCACAAGTTTGAGAGTTTGTCTGAACTCAAAAGAAACAAAAATATGGTGGATCTATATAGCTTTTGGATGCAAAGGATTGAAAAAGCCAAAGAGAAGTATGAGAAAGCAATGATGGAAAACAAGAAGAAAGAAATGACTAATTTTATACGTCAATTTATTCCTACTCGTAACTATAATGTTGGTGATCTGAGCTTAAATGATATCAATTATCTGACGACCTTAATTGATGAAAATATGAAGGAAGTCAATCAGAGGTTGGATTCAATGGTAACCCAAGCCCATGAGCAGGATAACATGGATGAGGTTGCTGATACCCATGGTTATGAGACTAACATGAATTATGGTTTGCAAAGTGATGAGCAACTACCTATGGACTTCCTCATGCCACCATTTGATGATTTTGATTTTGATTTTGACCCAAATGGATTTGGATCTATCTAG

Protein sequence

>MsaT014501.1

MKKASELSTLCGVEVGVIIYGENHGQAEVWPPAIGLERVLHKFESLSELKRNKNMVDLYSFWMQRIEKAKEKYEKAMMENKKKEMTNFIRQFIPTRNYNVGDLSLNDINYLTTLIDENMKEVNQRLDSMVTQAHEQDNMDEVADTHGYETNMNYGLQSDEQLPMDFLMPPFDDFDFDFDPNGFGSI*