AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG014508


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG014508 MtrunA17_Chr3g0106501 84.516 155 24 0 29 183 1 155 8.54e-85 246
MsaG014508 MtrunA17_Chr3g0107381 49.677 155 77 1 1 155 1 154 3.57e-48 156
MsaG014508 MtrunA17_Chr3g0107461 45.625 160 87 0 1 160 1 160 7.31e-43 140
MsaG014508 MtrunA17_Chr2g0283941 43.030 165 94 0 1 165 1 165 3.40e-41 139
MsaG014508 MtrunA17_Chr3g0106421 47.482 139 73 0 29 167 1 139 8.96e-40 134
MsaG014508 MtrunA17_Chr4g0014321 38.415 164 101 0 1 164 1 164 2.15e-37 129
MsaG014508 MtrunA17_Chr3g0107331 41.975 162 87 3 3 161 2 159 1.74e-36 124
MsaG014508 MtrunA17_Chr3g0110131 41.401 157 91 1 1 157 1 156 2.67e-36 126
MsaG014508 MtrunA17_Chr3g0107361 41.401 157 89 2 3 158 2 156 1.18e-35 122
MsaG014508 MtrunA17_Chr3g0107351 42.038 157 88 2 3 158 2 156 2.43e-35 121
MsaG014508 MtrunA17_Chr4g0031421 43.382 136 77 0 29 164 1 136 1.14e-33 116
MsaG014508 MtrunA17_Chr8g0351751 39.634 164 97 1 1 162 1 164 5.28e-33 118
MsaG014508 MtrunA17_Chr3g0105791 43.382 136 77 0 29 164 1 136 1.00e-32 114
MsaG014508 MtrunA17_Chr4g0013041 37.013 154 95 1 1 154 1 152 2.09e-32 115
MsaG014508 MtrunA17_Chr3g0107341 40.127 157 91 2 3 158 2 156 1.83e-31 111
MsaG014508 MtrunA17_Chr5g0432691 36.364 154 97 1 1 154 1 153 1.48e-30 109
MsaG014508 MtrunA17_Chr4g0014031 39.241 158 96 0 1 158 1 158 1.59e-30 111
MsaG014508 MtrunA17_Chr1g0197321 40.994 161 88 4 1 158 1 157 1.13e-28 104
MsaG014508 MtrunA17_Chr4g0014131 37.037 162 102 0 1 162 1 162 3.13e-26 100
MsaG014508 MtrunA17_Chr2g0296861 36.774 155 97 1 1 155 1 154 5.47e-26 97.4
MsaG014508 MtrunA17_Chr2g0296831 42.982 114 65 0 1 114 1 114 9.16e-26 95.9
MsaG014508 MtrunA17_Chr5g0420351 36.250 160 94 3 1 157 1 155 1.64e-25 96.3
MsaG014508 MtrunA17_Chr1g0188681 35.065 154 98 2 1 154 1 152 5.20e-25 95.1
MsaG014508 MtrunA17_Chr4g0014121 34.839 155 101 0 1 155 29 183 1.78e-24 94.4
MsaG014508 MtrunA17_Chr1g0197461 38.365 159 90 5 3 158 2 155 2.09e-24 93.2
MsaG014508 MtrunA17_Chr1g0197261 33.544 158 103 2 1 158 1 156 1.32e-23 91.3
MsaG014508 MtrunA17_Chr1g0188651 37.662 154 92 2 1 154 1 150 8.56e-23 89.4
MsaG014508 MtrunA17_Chr1g0193311 36.306 157 98 2 1 157 1 155 3.32e-22 87.8
MsaG014508 MtrunA17_Chr1g0188661 33.766 154 100 2 1 154 1 152 2.42e-20 82.8
MsaG014508 MtrunA17_Chr7g0218151 33.766 154 100 2 1 154 1 152 3.40e-20 82.4
MsaG014508 MtrunA17_Chr4g0012761 33.766 154 100 2 1 154 1 152 1.56e-18 78.2
MsaG014508 MtrunA17_Chr7g0267601 29.060 117 83 0 3 119 6 122 3.15e-16 75.5
MsaG014508 MtrunA17_Chr4g0008701 30.769 117 81 0 3 119 6 122 1.01e-15 74.3
MsaG014508 MtrunA17_Chr6g0457851 32.743 113 69 3 1 107 11 122 7.77e-15 71.2
MsaG014508 MtrunA17_Chr1g0212151 31.897 116 72 3 1 110 1 115 4.35e-14 68.9
MsaG014508 MtrunA17_Chr6g0449861 30.973 113 71 3 1 107 9 120 2.31e-13 67.0
MsaG014508 MtrunA17_Chr4g0059631 34.259 108 67 3 1 105 1 107 2.90e-13 65.9
MsaG014508 MtrunA17_Chr3g0128721 24.359 156 117 1 3 158 6 160 3.87e-13 66.6
MsaG014508 MtrunA17_Chr6g0449851 28.571 126 83 3 1 120 1 125 2.25e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG014508 AT5G48670.1 38.994 159 92 2 1 157 1 156 8.13e-27 103
MsaG014508 AT3G05860.2 35.948 153 93 2 1 151 1 150 8.47e-27 101
MsaG014508 AT3G05860.3 35.714 154 94 2 1 152 1 151 2.51e-26 101
MsaG014508 AT3G05860.1 35.714 154 94 2 1 152 1 151 2.97e-26 101
MsaG014508 AT1G65300.1 38.261 115 71 0 3 117 2 116 5.23e-24 95.5
MsaG014508 AT1G65330.1 31.707 164 109 2 3 165 2 163 5.85e-24 95.5
MsaG014508 AT5G26650.1 37.719 114 71 0 4 117 2 115 4.89e-23 94.4
MsaG014508 AT1G22590.2 31.737 167 98 2 1 161 1 157 6.08e-23 90.1
MsaG014508 AT5G27960.1 35.965 114 73 0 4 117 2 115 3.08e-22 91.7
MsaG014508 AT2G28700.1 31.613 155 99 2 1 152 1 151 3.64e-21 89.0
MsaG014508 AT5G06500.1 33.333 144 79 3 1 142 1 129 8.11e-21 86.7
MsaG014508 AT5G27810.1 42.697 89 51 0 29 117 1 89 5.01e-19 78.6
MsaG014508 AT1G31630.1 33.913 115 75 1 3 117 2 115 2.05e-18 81.6
MsaG014508 AT5G26630.1 33.742 163 95 3 1 157 1 156 6.67e-18 78.2
MsaG014508 AT1G31640.1 33.043 115 76 1 3 117 2 115 1.06e-15 74.3
MsaG014508 AT2G40210.1 36.000 100 64 0 1 100 1 100 3.56e-15 72.8
MsaG014508 AT5G26580.1 31.624 117 66 2 1 117 1 103 4.24e-15 72.4
MsaG014508 AT1G77980.1 30.719 153 87 4 1 152 1 135 1.09e-11 62.8
MsaG014508 AT5G13790.1 43.836 73 39 1 1 73 1 71 1.30e-11 62.0
MsaG014508 AT5G13790.2 43.836 73 39 1 1 73 1 71 1.32e-11 62.0
MsaG014508 AT1G22130.1 39.759 83 49 1 1 83 1 82 2.73e-11 61.6
MsaG014508 AT2G03710.3 40.845 71 42 0 1 71 1 71 3.42e-11 59.7
MsaG014508 AT2G03710.1 40.845 71 42 0 1 71 1 71 9.16e-11 59.3

Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACCAAAAGTTGGATTTAA+TGG 0.132212 3:-74117217 MsaT014508.1:CDS
AATCCATTAAATCCAACTTT+TGG 0.339004 3:+74117214 None:intergenic
ATCAAGTCCGTAACTTCATT+AGG 0.342103 3:+74117261 None:intergenic
GAAGCTAGATAAAATTCATT+TGG 0.361908 3:+74117144 None:intergenic
GAGGTTTGGCCTTCTCCAAC+TGG 0.364214 3:-74117501 MsaT014508.1:CDS
GAGCATCCTTTGTGGTATAG+AGG 0.426750 3:-74117562 MsaT014508.1:CDS
ACCATCATGAAGTTGAGGTT+TGG 0.438425 3:-74117515 MsaT014508.1:CDS
AACGAATTGAGCATCCTTTG+TGG 0.463741 3:-74117570 MsaT014508.1:CDS
CAATTGAATCCTCTTGAGCT+TGG 0.465024 3:+74117190 None:intergenic
GTCCGTAACTTCATTAGGAT+TGG 0.474726 3:+74117266 None:intergenic
CTTGATTAATGAGAAATTGA+AGG 0.475026 3:-74117244 MsaT014508.1:CDS
GACCAATCCTAATGAAGTTA+CGG 0.478007 3:-74117268 MsaT014508.1:CDS
GGAAAACAAGAAGAAAGAAA+TGG 0.479640 3:-74117349 MsaT014508.1:CDS
GAAGGAAGTCTACCAAAAGT+TGG 0.485133 3:-74117226 MsaT014508.1:CDS
TGAAAACCATCATGAAGTTG+AGG 0.549600 3:-74117520 MsaT014508.1:CDS
CACTGTTATGGGCAGAAGGA+AGG 0.550745 3:-74119146 None:intergenic
GCCAAACCTCAACTTCATGA+TGG 0.552073 3:+74117514 None:intergenic
ATCATCAAAATTAAATTCAG+TGG 0.561119 3:+74117299 None:intergenic
AGATCAGTATCACAAACTAA+AGG 0.570022 3:-74117373 MsaT014508.1:CDS
TCATCACTGTTATGGGCAGA+AGG 0.577528 3:-74119150 None:intergenic
GAGTAGTAAGTGTGTTGTCA+AGG 0.577943 3:-74117479 MsaT014508.1:CDS
CTTACTACTCCAGTTGGAGA+AGG 0.592421 3:+74117492 None:intergenic
TCAGTATCACAAACTAAAGG+TGG 0.593746 3:-74117370 MsaT014508.1:CDS
AACACACTTACTACTCCAGT+TGG 0.596457 3:+74117486 None:intergenic
TGTTATGGGCAGAAGGAAGG+TGG 0.608769 3:-74119143 None:intergenic
AATGGATTTCCAAGCTCAAG+AGG 0.613698 3:-74117199 MsaT014508.1:CDS
TAGTCAACAATTCAAAGCGG+AGG 0.648552 3:-74119108 MsaT014508.1:CDS
CACAAGCCTCTATACCACAA+AGG 0.687096 3:+74117556 None:intergenic
ACATAGTCAACAATTCAAAG+CGG 0.750376 3:-74119111 MsaT014508.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 74117137 74119161 74117137 ID=MsaG014508
Chr3 mRNA 74117137 74119161 74117137 ID=MsaT014508.1;Parent=MsaG014508
Chr3 exon 74117137 74117609 74117137 ID=MsaT014508.1.exon2;Parent=MsaT014508.1
Chr3 CDS 74117137 74117609 74117137 ID=cds.MsaT014508.1;Parent=MsaT014508.1
Chr3 exon 74119083 74119161 74119083 ID=MsaT014508.1.exon1;Parent=MsaT014508.1
Chr3 CDS 74119083 74119161 74119083 ID=cds.MsaT014508.1;Parent=MsaT014508.1
Gene Sequence

>MsaT014508.1

ATGGGCAGAAGGAAGGTGGAAATCGCATACATAGTCAACAATTCAAAGCGGAGGTTAACATTCATAGCAAGAAAAAATGGGTTATTGAAGATGATCAACGAATTGAGCATCCTTTGTGGTATAGAGGCTTGTGCAATCATTTTTGATGAAAACCATCATGAAGTTGAGGTTTGGCCTTCTCCAACTGGAGTAGTAAGTGTGTTGTCAAGGTTCTCGAATTTGTCCGAACATGAAAAAAGAACAAGGATGCTGGATTTAGAGAGCTACTTGAAACAAAGAATTGAGAAAGCTCAAGATCAGTATCACAAACTAAAGGTGGAAAACAAGAAGAAAGAAATGGCTGAATATATAAACAAATATATGTGTGCCACTGAATTTAATTTTGATGATGCTCACTTGACCAATCCTAATGAAGTTACGGACTTGATTAATGAGAAATTGAAGGAAGTCTACCAAAAGTTGGATTTAATGGATTTCCAAGCTCAAGAGGATTCAATTGATTTTGATGATATTGATTTCGATCCAAATGAATTTTATCTAGCTTCTCCATAA

Protein sequence

>MsaT014508.1

MGRRKVEIAYIVNNSKRRLTFIARKNGLLKMINELSILCGIEACAIIFDENHHEVEVWPSPTGVVSVLSRFSNLSEHEKRTRMLDLESYLKQRIEKAQDQYHKLKVENKKKEMAEYINKYMCATEFNFDDAHLTNPNEVTDLINEKLKEVYQKLDLMDFQAQEDSIDFDDIDFDPNEFYLASP*