AlfalfaGEDB | MsaG014515

M. sativa ssp. caerulea / MsaG014515

KEGG: K08851
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014515	XP_013460360.1	96.460	226	8	0	1	226	1	226	4.22e-160	452

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014515	sp\|Q96S44\|PRPK_HUMAN	49.091	220	109	2	10	226	34	253	4.45e-64	202

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014515	tr\|I3SWE5\|I3SWE5_MEDTR	96.460	226	8	0	1	226	1	226	2.02e-160	452

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001810	MsaG014515	0.815400	1.632411e-51	3.187686e-49
MsaG002481	MsaG014515	0.813294	4.742578e-51	8.783006e-49
MsaG002871	MsaG014515	0.814956	2.046295e-51	3.951291e-49
MsaG003662	MsaG014515	0.816213	1.077297e-51	2.147602e-49
MsaG004070	MsaG014515	0.817249	6.325510e-52	1.295031e-49
MsaG004096	MsaG014515	0.855249	1.385086e-61	9.028863e-59
MsaG004773	MsaG014515	0.827066	3.425152e-54	9.124097e-52
MsaG004856	MsaG014515	0.816557	9.029979e-52	1.815986e-49
MsaG006033	MsaG014515	0.826149	5.655747e-54	1.468730e-51
MsaG006657	MsaG014515	0.821378	7.326777e-53	1.671255e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014515	MtrunA17_Chr3g0106561	96.460	226	8	0	1	226	1	226	3.88e-164	452

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014515	AT5G26110.3	78.761	226	48	1	226	1	226	7.84e-134	375
MsaG014515	AT5G26110.1	78.761	226	48	1	226	1	226	7.84e-134	375
MsaG014515	AT5G26110.2	79.012	162	34	65	226	2	163	7.13e-95	275
MsaG014515	AT1G08120.1	73.684	57	15	1	57	5	61	4.60e-22	87.0

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Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGATACTGATCAGT+TGG	0.526434	3:-74162968	MsaT014515.1:intron
AAAGATGTATTTCTTGAATT+CGG	0.327087	3:-74163111	MsaT014515.1:CDS
AAATCGACGGCTTTATCTTC+TGG	0.462118	3:+74162793	None:intergenic
AACCAAGGCAAGGCGACTTG+GGG	0.602601	3:-74163211	MsaT014515.1:CDS
AACCCCAAGTCGCCTTGCCT+TGG	0.476565	3:+74163209	None:intergenic
AACTCAGAATCATCCAACCA+TGG	0.691341	3:+74161757	None:intergenic
AAGAGGACGAAAGAGGACCA+TGG	0.717008	3:-74161774	MsaT014515.1:CDS
AATGTTAAAGTGTGCAACAC+AGG	0.565875	3:+74163159	None:intergenic
ACAACCAAGGCAAGGCGACT+TGG	0.438223	3:-74163213	MsaT014515.1:CDS
ACAATGAACAAGCTTGCAGA+CGG	0.653580	3:-74161886	MsaT014515.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	74161766	74164229	74161766	ID=MsaG014515
Chr3	mRNA	74161766	74164229	74161766	ID=MsaT014515.1;Parent=MsaG014515
Chr3	exon	74161766	74161803	74161766	ID=MsaT014515.1.exon6;Parent=MsaT014515.1
Chr3	CDS	74161766	74161803	74161766	ID=cds.MsaT014515.1;Parent=MsaT014515.1
Chr3	exon	74161887	74161959	74161887	ID=MsaT014515.1.exon5;Parent=MsaT014515.1
Chr3	CDS	74161887	74161959	74161887	ID=cds.MsaT014515.1;Parent=MsaT014515.1
Chr3	exon	74162741	74162854	74162741	ID=MsaT014515.1.exon4;Parent=MsaT014515.1
Chr3	CDS	74162741	74162854	74162741	ID=cds.MsaT014515.1;Parent=MsaT014515.1
Chr3	exon	74162969	74163247	74162969	ID=MsaT014515.1.exon3;Parent=MsaT014515.1
Chr3	CDS	74162969	74163247	74162969	ID=cds.MsaT014515.1;Parent=MsaT014515.1
Chr3	exon	74163656	74163769	74163656	ID=MsaT014515.1.exon2;Parent=MsaT014515.1
Chr3	CDS	74163656	74163769	74163656	ID=cds.MsaT014515.1;Parent=MsaT014515.1
Chr3	exon	74164167	74164229	74164167	ID=MsaT014515.1.exon1;Parent=MsaT014515.1
Chr3	CDS	74164167	74164229	74164167	ID=cds.MsaT014515.1;Parent=MsaT014515.1

Gene Sequence

>MsaT014515.1

ATGGGGACTGAAATTGAGTCAACAGATACCTCTCTCATTCTCATCAAACAAGGAGCTGAAGCTAGGGTTTTTGAGACTTCTTTTGTGGGAAGAAGGTGTGTTGTCAAAGAGAGATTCTCAAAGAAGTACAGACATCCGATTTTGGATGCTAAGTTGACACTCAAGCGCTTAAATGCGGAGGCGAGGTGCACAACCAAGGCAAGGCGACTTGGGGTTTGTACCCCTGTGTTATATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATTTGTCGATGGACCTTCAGTCAAAGATGTATTTCTTGAATTCGGATCATGTGGCATCAATGAAGAGCGGTTAGGCAAGATTGCATCTCAAATTGGTGATGTAATTGCAAAGTTACACGATGGTGGTCTTGTTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAATGATACTGATCAGTTGGTTCTTATTGACTTTGGTTTGAGCTTCACTTCAACTCTACCAGAAGATAAAGCCGTCGATTTGTATGTTTTAGAAAGAGCCCTTGTTTCGATGCATTCTTCATGTGGTAATGTGATGGATCAGATACTTGCTGCTTACCGCAAATCATCGAAACAGTGGTCATCCACAATGAACAAGCTTGCAGACGTGCGACAAAGAGGACGAAAGAGGACCATGGTTGGATGA

Protein sequence

>MsaT014515.1

MGTEIESTDTSLILIKQGAEARVFETSFVGRRCVVKERFSKKYRHPILDAKLTLKRLNAEARCTTKARRLGVCTPVLYAVDPVLHTLTFEFVDGPSVKDVFLEFGSCGINEERLGKIASQIGDVIAKLHDGGLVHGDLTTSNMLLKNDTDQLVLIDFGLSFTSTLPEDKAVDLYVLERALVSMHSSCGNVMDQILAAYRKSSKQWSSTMNKLADVRQRGRKRTMVG*