AlfalfaGEDB | MsaG014588

M. sativa ssp. caerulea / MsaG014588

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014588	KEH34466.1	96.273	161	6	0	1	161	1	161	1.51e-107	313

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014588	sp\|Q9FJK3\|AGL80_ARATH	43.709	151	85	0	2	152	3	153	1.62e-33	123

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014588	tr\|A0A072UYG1\|A0A072UYG1_MEDTR	96.273	161	6	0	1	161	1	161	7.22e-108	313

TFs/TRs:

Gene ID	Type	Classification
MsaG014588	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000535	MsaG014588	0.833800	7.861322e-56	2.540642e-53
MsaG001029	MsaG014588	0.818594	3.154026e-52	6.684975e-50
MsaG001479	MsaG014588	0.826915	3.720798e-54	9.870337e-52
MsaG001669	MsaG014588	0.805054	2.714921e-49	4.121175e-47
MsaG002277	MsaG014588	0.809139	3.741210e-50	6.257620e-48
MsaG003338	MsaG014588	0.831771	2.495838e-55	7.602372e-53
MsaG005214	MsaG014588	0.816613	8.772970e-52	1.766826e-49
MsaG005297	MsaG014588	0.816102	1.140061e-51	2.266238e-49
MsaG005809	MsaG014588	0.839770	2.397927e-57	9.293322e-55
MsaG005960	MsaG014588	0.809778	2.732494e-50	4.641371e-48
MsaG006255	MsaG014588	0.801744	1.307098e-48	1.838350e-46
MsaG006933	MsaG014588	0.802612	8.678218e-49	1.244998e-46
MsaG008029	MsaG014588	0.806378	1.435147e-49	2.247253e-47
MsaG008433	MsaG014588	0.808715	4.606094e-50	7.626181e-48
MsaG008929	MsaG014588	0.831139	3.563117e-55	1.065418e-52
MsaG012282	MsaG014588	0.819562	1.903782e-52	4.138685e-50
MsaG044337	MsaG014588	0.805980	1.739480e-49	2.698109e-47
MsaG045188	MsaG014588	0.817168	6.596162e-52	1.347612e-49
MsaG045477	MsaG014588	0.829126	1.098610e-54	3.100752e-52
MsaG001372	MsaG014588	0.828997	1.180224e-54	3.318969e-52
MsaG001715	MsaG014588	0.833330	1.028706e-55	3.278977e-53
MsaG010137	MsaG014588	0.838085	6.514421e-57	2.395467e-54
MsaG014588	MsaG023010	0.800936	1.909146e-48	2.636386e-46
MsaG014588	MsaG030863	0.815037	1.963481e-51	3.799066e-49
MsaG014588	MsaG033470	0.809990	2.461176e-50	4.201937e-48
MsaG014588	MsaG036760	0.870116	3.783208e-66	4.405786e-63
MsaG014588	MsaG036365	0.829044	1.149653e-54	3.237427e-52
MsaG014588	MsaG043366	0.812283	7.877118e-51	1.422494e-48
MsaG015897	MsaG014588	0.826335	5.109089e-54	1.333581e-51
MsaG017090	MsaG014588	0.822073	5.067305e-53	1.177422e-50
MsaG018779	MsaG014588	0.822523	3.989327e-53	9.382410e-51
MsaG019562	MsaG014588	0.800926	1.918302e-48	2.648394e-46
MsaG020080	MsaG014588	0.803979	4.536614e-49	6.716868e-47
MsaG022467	MsaG014588	0.816464	9.472496e-52	1.900413e-49
MsaG023831	MsaG014588	0.824714	1.231856e-53	3.074510e-51
MsaG025955	MsaG014588	0.820866	9.598638e-53	2.159942e-50
MsaG026842	MsaG014588	0.843304	2.838518e-58	1.230786e-55
MsaG029391	MsaG014588	0.800197	2.697178e-48	3.662853e-46
MsaG029537	MsaG014588	0.877188	1.602370e-68	2.541339e-65
MsaG034546	MsaG014588	0.841486	8.564532e-58	3.503642e-55
MsaG037006	MsaG014588	0.802865	7.699633e-49	1.110989e-46
MsaG039051	MsaG014588	0.835743	2.563634e-56	8.780334e-54
MsaG040013	MsaG014588	0.834953	4.051978e-56	1.355294e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014588	MtrunA17_Chr3g0107341	96.273	161	6	0	1	161	1	161	1.39e-111	313
MsaG014588	MtrunA17_Chr3g0107351	91.925	161	13	0	1	161	1	161	1.77e-106	301
MsaG014588	MtrunA17_Chr3g0107361	89.441	161	17	0	1	161	1	161	1.61e-103	293
MsaG014588	MtrunA17_Chr3g0107331	76.875	160	37	0	1	160	1	160	2.02e-87	252
MsaG014588	MtrunA17_Chr3g0110131	48.408	157	81	0	2	158	3	159	1.14e-44	147
MsaG014588	MtrunA17_Chr8g0351751	43.125	160	88	2	2	158	3	162	5.18e-42	140
MsaG014588	MtrunA17_Chr3g0107381	41.176	153	90	0	2	154	3	155	2.68e-40	135
MsaG014588	MtrunA17_Chr4g0014321	40.252	159	92	2	2	158	3	160	1.46e-39	133
MsaG014588	MtrunA17_Chr1g0197261	43.226	155	87	1	2	156	3	156	3.94e-39	130
MsaG014588	MtrunA17_Chr4g0014031	43.396	159	89	1	2	159	3	161	1.33e-38	131
MsaG014588	MtrunA17_Chr4g0013041	40.667	150	86	2	4	152	5	152	7.57e-37	125
MsaG014588	MtrunA17_Chr1g0197461	41.401	157	91	1	1	157	1	156	7.95e-37	124
MsaG014588	MtrunA17_Chr2g0296831	47.059	119	63	0	2	120	3	121	1.78e-35	119
MsaG014588	MtrunA17_Chr5g0432691	41.772	158	92	0	4	161	5	162	5.61e-35	119
MsaG014588	MtrunA17_Chr4g0014121	45.098	153	83	1	1	152	30	182	1.16e-34	119
MsaG014588	MtrunA17_Chr4g0014131	44.025	159	88	1	2	159	3	161	1.72e-34	120
MsaG014588	MtrunA17_Chr1g0197321	42.308	156	88	2	2	156	3	157	1.29e-33	116
MsaG014588	MtrunA17_Chr5g0420351	40.909	154	90	1	2	155	3	155	8.21e-33	114
MsaG014588	MtrunA17_Chr1g0188681	40.132	152	90	1	1	152	2	152	5.16e-30	107
MsaG014588	MtrunA17_Chr4g0012761	42.208	154	88	1	2	155	3	155	7.96e-30	106
MsaG014588	MtrunA17_Chr7g0218151	42.208	154	88	1	2	155	3	155	8.40e-30	106
MsaG014588	MtrunA17_Chr2g0283941	38.000	150	92	1	4	152	5	154	3.24e-29	107
MsaG014588	MtrunA17_Chr1g0188661	42.208	154	88	1	2	155	3	155	1.83e-28	103
MsaG014588	MtrunA17_Chr3g0106501	42.308	130	72	2	29	156	2	130	8.33e-28	101
MsaG014588	MtrunA17_Chr1g0193311	40.260	154	91	1	2	155	3	155	8.65e-28	101
MsaG014588	MtrunA17_Chr3g0107461	34.194	155	101	1	2	155	3	157	3.69e-25	94.7
MsaG014588	MtrunA17_Chr2g0296861	36.486	148	94	0	5	152	6	153	1.99e-22	87.4
MsaG014588	MtrunA17_Chr1g0188651	38.562	153	89	3	1	152	2	150	3.82e-22	86.7
MsaG014588	MtrunA17_Chr3g0106421	34.615	130	84	1	29	157	2	131	6.82e-22	87.8
MsaG014588	MtrunA17_Chr7g0267601	31.373	153	104	1	2	154	6	157	2.09e-19	84.0
MsaG014588	MtrunA17_Chr4g0008701	30.065	153	106	1	2	154	6	157	7.57e-19	82.4
MsaG014588	MtrunA17_Chr3g0128721	28.387	155	111	0	2	156	6	160	2.76e-17	77.8
MsaG014588	MtrunA17_Chr3g0105791	32.812	128	85	1	29	155	2	129	4.33e-17	73.2
MsaG014588	MtrunA17_Chr4g0031421	32.031	128	86	1	29	155	2	129	3.97e-16	70.9
MsaG014588	MtrunA17_Chr6g0457851	31.677	161	94	7	2	155	13	164	1.99e-14	69.3
MsaG014588	MtrunA17_Chr1g0212151	33.621	116	68	4	2	110	3	116	1.92e-11	60.8
MsaG014588	MtrunA17_Chr6g0449861	32.174	115	71	3	2	110	11	124	2.03e-11	60.8
MsaG014588	MtrunA17_Chr6g0449851	36.441	118	64	5	2	111	3	117	4.36e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014588	AT5G48670.1	43.709	151	85	0	2	152	3	153	1.65e-34	123
MsaG014588	AT1G65300.1	36.184	152	97	0	1	152	1	152	1.48e-30	112
MsaG014588	AT1G65330.1	36.709	158	100	0	1	158	1	158	1.56e-29	109
MsaG014588	AT5G26630.1	35.032	157	102	0	2	158	3	159	3.43e-26	99.4
MsaG014588	AT5G27960.1	32.903	155	104	0	4	158	3	157	3.87e-26	101
MsaG014588	AT5G26650.1	32.903	155	104	0	4	158	3	157	3.95e-26	102
MsaG014588	AT3G05860.2	35.294	153	99	0	2	154	3	155	8.01e-25	95.5
MsaG014588	AT3G05860.3	35.294	153	99	0	2	154	3	155	1.65e-24	95.5
MsaG014588	AT3G05860.1	35.294	153	99	0	2	154	3	155	2.40e-24	95.5
MsaG014588	AT5G27810.1	43.478	92	52	0	29	120	2	93	3.02e-23	89.0
MsaG014588	AT1G31630.1	29.814	161	112	1	1	161	1	160	9.33e-23	92.4
MsaG014588	AT1G31640.1	30.464	151	104	1	1	151	1	150	1.55e-20	87.4
MsaG014588	AT5G26580.1	32.215	149	87	1	4	152	5	139	1.70e-19	84.0
MsaG014588	AT2G28700.1	30.921	152	105	0	2	153	3	154	6.50e-18	79.3
MsaG014588	AT1G22590.2	34.906	106	68	1	2	107	3	107	9.75e-17	73.2
MsaG014588	AT2G40210.1	36.364	99	63	0	2	100	3	101	1.05e-12	65.1
MsaG014588	AT5G58890.1	33.125	160	78	9	5	151	6	149	9.64e-12	62.0

Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTGAAGTCAAAAGAGAAAT+TGG	0.291455	3:-75602795	MsaT014588.1:CDS
AAAAGAGAAATTGGTGAAAG+TGG	0.384195	3:-75602786	MsaT014588.1:CDS
GAAGGTGAAACTTGCATTCA+TGG	0.384908	3:-75603065	MsaT014588.1:CDS
GAACCAAGAGAGCTATTTGA+TGG	0.414546	3:-75602825	MsaT014588.1:CDS
CTTGTCGGAGACATTCAAAC+AGG	0.421968	3:+75602729	None:intergenic
GGACTTCTCCATCTCCCAAT+TGG	0.425670	3:+75602757	None:intergenic
AGAGGTCTGGCCTTCCCCAT+TGG	0.437778	3:-75602912	MsaT014588.1:CDS
TCAAAAGTTATTCAGAAGTC+GGG	0.444131	3:-75602865	MsaT014588.1:CDS
TCTCCATCAAATAGCTCTCT+TGG	0.453856	3:+75602822	None:intergenic
TTCAAAAGTTATTCAGAAGT+CGG	0.458207	3:-75602866	MsaT014588.1:CDS
CTTCCCCATTGGAGGTTCAA+AGG	0.464729	3:-75602901	MsaT014588.1:CDS
GGTCTGGCCTTCCCCATTGG+AGG	0.467393	3:-75602909	MsaT014588.1:CDS
TTCAATCAGAGCCAGAGGTC+TGG	0.467622	3:-75602925	MsaT014588.1:CDS
AATGGGGAAGGCCAGACCTC+TGG	0.470946	3:+75602914	None:intergenic
TAATCCTTTGAACCTCCAAT+GGG	0.502458	3:+75602897	None:intergenic
TGAAAGTGGAGAAAACCAAT+TGG	0.503387	3:-75602772	MsaT014588.1:CDS
ATTCAGAAGTCGGGCAAGGA+AGG	0.517455	3:-75602856	MsaT014588.1:CDS
ATAATCCTTTGAACCTCCAA+TGG	0.537452	3:+75602896	None:intergenic
GATGAACTCACTACCCTATG+TGG	0.541478	3:-75602980	MsaT014588.1:CDS
GAAAGTGGAGAAAACCAATT+GGG	0.551602	3:-75602771	MsaT014588.1:CDS
GAGACATTCAAACAGGATCA+AGG	0.560270	3:+75602736	None:intergenic
AAGAGAGCTATTTGATGGAG+AGG	0.560879	3:-75602820	MsaT014588.1:CDS
CAGAAGTCGGGCAAGGAAGG+AGG	0.561788	3:-75602853	MsaT014588.1:CDS
GCACACATCAATCCCACATA+GGG	0.576358	3:+75602967	None:intergenic
TGAAATTAATGAGAAGCTGA+AGG	0.586463	3:-75602657	MsaT014588.1:CDS
GGAGAAAACCAATTGGGAGA+TGG	0.587398	3:-75602765	MsaT014588.1:CDS
ATGAACTCACTACCCTATGT+GGG	0.601587	3:-75602979	MsaT014588.1:CDS
AGTTATTCAGAAGTCGGGCA+AGG	0.603949	3:-75602860	MsaT014588.1:CDS
CGCACACATCAATCCCACAT+AGG	0.604773	3:+75602966	None:intergenic
CTTTGAACCTCCAATGGGGA+AGG	0.605253	3:+75602902	None:intergenic
TCATGGTCAATGATTCTGCA+AGG	0.642899	3:-75603048	MsaT014588.1:CDS
CGAATTTCAATCAGAGCCAG+AGG	0.648177	3:-75602930	MsaT014588.1:CDS
TACATTGAGGATGAGAACGA+AGG	0.657193	3:-75603083	None:intergenic
AATCCTTTGAACCTCCAATG+GGG	0.726583	3:+75602898	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	75602610	75603095	75602610	ID=MsaG014588
Chr3	mRNA	75602610	75603095	75602610	ID=MsaT014588.1;Parent=MsaG014588
Chr3	exon	75602610	75603095	75602610	ID=MsaT014588.1.exon1;Parent=MsaT014588.1
Chr3	CDS	75602610	75603095	75602610	ID=cds.MsaT014588.1;Parent=MsaT014588.1

Gene Sequence

>MsaT014588.1

ATGAGAACGAAGGTGAAACTTGCATTCATGGTCAATGATTCTGCAAGGAAAATAACTTACAACAAAAGAAAAAAGAGTCTGAAAAAGATGGTTGATGAACTCACTACCCTATGTGGGATTGATGTGTGCGCTATACTTTATAGCGAATTTCAATCAGAGCCAGAGGTCTGGCCTTCCCCATTGGAGGTTCAAAGGATTATCACAAAGTTCAAAAGTTATTCAGAAGTCGGGCAAGGAAGGAGGAAGTTGAACCAAGAGAGCTATTTGATGGAGAGGATTGTGAAGTCAAAAGAGAAATTGGTGAAAGTGGAGAAAACCAATTGGGAGATGGAGAAGTCCTTGATCCTGTTTGAATGTCTCCGACAAGAAAATTTTATCAACACTTTGAACACAAACGTTTTGAATGATCTAGCATGTGAAATTAATGAGAAGCTGAAGGAAATTACTTCAAAGATGAATCAGCTTGACACAAATGAAAGCACTTAG

Protein sequence

>MsaT014588.1

MRTKVKLAFMVNDSARKITYNKRKKSLKKMVDELTTLCGIDVCAILYSEFQSEPEVWPSPLEVQRIITKFKSYSEVGQGRRKLNQESYLMERIVKSKEKLVKVEKTNWEMEKSLILFECLRQENFINTLNTNVLNDLACEINEKLKEITSKMNQLDTNEST*