AlfalfaGEDB | MsaG014590

M. sativa ssp. caerulea / MsaG014590

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014590	XP_013460436.1	93.665	221	8	1	1	215	1	221	4.61e-150	426

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014590	sp\|Q9FJK3\|AGL80_ARATH	52.000	175	82	1	1	173	1	175	5.29e-53	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014590	tr\|A0A072UXE2\|A0A072UXE2_MEDTR	93.665	221	8	1	1	215	1	221	2.20e-150	426

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TFs/TRs:

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Gene ID	Type	Classification
MsaG014590	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014590	MtrunA17_Chr3g0107381	93.665	221	8	1	1	215	1	221	4.24e-154	426
MsaG014590	MtrunA17_Chr3g0110131	53.361	238	87	4	1	215	1	237	9.09e-75	226
MsaG014590	MtrunA17_Chr8g0351751	47.984	248	91	7	1	215	1	243	4.70e-63	196
MsaG014590	MtrunA17_Chr3g0107461	52.174	161	76	1	1	160	1	161	7.64e-56	175
MsaG014590	MtrunA17_Chr4g0014321	50.641	156	76	1	1	155	1	156	2.56e-53	171
MsaG014590	MtrunA17_Chr4g0013041	50.649	154	73	2	1	153	1	152	2.92e-51	164
MsaG014590	MtrunA17_Chr4g0014031	43.172	227	113	5	1	214	1	224	6.37e-51	164
MsaG014590	MtrunA17_Chr3g0107331	47.712	153	80	0	3	155	2	154	9.09e-51	162
MsaG014590	MtrunA17_Chr4g0014121	52.866	157	73	1	1	156	29	185	5.26e-49	158
MsaG014590	MtrunA17_Chr4g0014131	53.548	155	71	1	1	154	1	155	1.09e-48	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014590	AT5G48670.1	52.000	175	82	1	1	173	1	175	5.37e-54	176
MsaG014590	AT3G05860.2	39.801	201	113	3	1	195	1	199	2.89e-41	139
MsaG014590	AT3G05860.1	40.838	191	105	3	1	185	1	189	3.26e-40	138
MsaG014590	AT3G05860.3	41.304	184	100	3	1	178	1	182	2.04e-39	136
MsaG014590	AT1G65300.1	40.789	152	90	0	3	154	2	153	1.10e-37	132
MsaG014590	AT5G26650.1	40.397	151	90	0	4	154	2	152	1.85e-35	129
MsaG014590	AT5G27810.1	60.215	93	37	0	29	121	1	93	1.86e-35	122
MsaG014590	AT1G65330.1	39.474	152	92	0	3	154	2	153	5.35e-35	125
MsaG014590	AT1G31630.1	38.816	152	90	3	3	153	2	151	6.24e-34	124
MsaG014590	AT5G27960.1	38.411	151	93	0	4	154	2	152	4.83e-33	121

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Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGCTGTCAAGGTTC+CGG	0.507965	3:-75674976	MsaT014590.1:CDS
AAATGTGACTGGAGGGGAGC+AGG	0.397749	3:-75674669	MsaT014590.1:CDS
AACAAAGGAATGACAACAAA+AGG	0.420798	3:-75674862	MsaT014590.1:CDS
AACCAAGCTGGAAATGTGAC+TGG	0.555977	3:-75674680	MsaT014590.1:CDS
AAGAACAGCTGAAGAAACAA+AGG	0.602104	3:-75674877	MsaT014590.1:CDS
AAGAGAGTTTCTTGAAGCAA+AGG	0.517056	3:-75674913	MsaT014590.1:CDS
AAGCTGGAAATGTGACTGGA+GGG	0.588063	3:-75674676	MsaT014590.1:CDS
AAGGAATGACAACAAAAGGA+AGG	0.606288	3:-75674858	MsaT014590.1:CDS
AATGGTAACATTGTGCCACA+TGG	0.661986	3:-75674557	MsaT014590.1:CDS
AATGTGACTGGAGGGGAGCA+GGG	0.507720	3:-75674668	MsaT014590.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	75674544	75675858	75674544	ID=MsaG014590
Chr3	mRNA	75674544	75675858	75674544	ID=MsaT014590.1;Parent=MsaG014590
Chr3	exon	75674544	75675112	75674544	ID=MsaT014590.1.exon2;Parent=MsaT014590.1
Chr3	CDS	75674544	75675112	75674544	ID=cds.MsaT014590.1;Parent=MsaT014590.1
Chr3	exon	75675780	75675858	75675780	ID=MsaT014590.1.exon1;Parent=MsaT014590.1
Chr3	CDS	75675780	75675858	75675780	ID=cds.MsaT014590.1;Parent=MsaT014590.1

Gene Sequence

>MsaT014590.1

ATGACTAGGAAGAAGGTGAGCCTTGCCTACATCACCAGTGACACAAAGAGGAGGGGAACATTCAAGAAAAGAAAAAATGGTTTGATCAAGAAGATTGATGAAATCAGCACGCTCTGTGGGATTGAAGCATGTGCAATCATCTTTGATCAAAACGATCCTCAACCAGAGGTTTGGCCTTCGCCCTGGGGAGTGCAAAAGGTGCTGTCAAGGTTCCGGAGATTGCCCGAACTAGAGCAAAGCAAAAAAATGTTCAATCAAGAGAGTTTCTTGAAGCAAAGGATCCAAAAAGCTCAAGAACAGCTGAAGAAACAAAGGAATGACAACAAAAGGAAGGAAATGACTCATCTGATGTTTCAATGCCTTAATGCTGGTCAGATTTTTGACCATGTTGGCATGGATGATCTCAATGATATCTCATGGTTGATTGATCAGAACTTGAAACAGATCGATAGGAAACTCGATCAGTCTCAAGCTGAAGAGGTTGTTCAAAACCAAGCTGGAAATGTGACTGGAGGGGAGCAGGGAATGGAGAACATTGCTGATCCAATGCAAAGGCAGCATTGGCCAATGGATTTCACCAACAACAACATTGGTGATGTGTTACCATTTGAAAATGGTAACATTGTGCCACATGGTTTCTGGCCTTGA

Protein sequence

>MsaT014590.1

MTRKKVSLAYITSDTKRRGTFKKRKNGLIKKIDEISTLCGIEACAIIFDQNDPQPEVWPSPWGVQKVLSRFRRLPELEQSKKMFNQESFLKQRIQKAQEQLKKQRNDNKRKEMTHLMFQCLNAGQIFDHVGMDDLNDISWLIDQNLKQIDRKLDQSQAEEVVQNQAGNVTGGEQGMENIADPMQRQHWPMDFTNNNIGDVLPFENGNIVPHGFWP*