AlfalfaGEDB | MsaG014594

M. sativa ssp. caerulea / MsaG014594

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014594	KEH34477.1	91.304	161	14	0	1	161	1	161	1.38e-104	306

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014594	sp\|Q9FJK3\|AGL80_ARATH	50.000	156	75	2	1	155	1	154	7.40e-38	134

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014594	tr\|A0A072UY35\|A0A072UY35_MEDTR	91.304	161	14	0	1	161	1	161	6.58e-105	306

TFs/TRs:

Gene ID	Type	Classification
MsaG014594	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014594	MtrunA17_Chr3g0107461	91.304	161	14	0	1	161	1	161	1.27e-108	306
MsaG014594	MtrunA17_Chr4g0031421	79.699	133	27	0	29	161	1	133	1.52e-73	217
MsaG014594	MtrunA17_Chr3g0105791	78.947	133	28	0	29	161	1	133	6.74e-73	215
MsaG014594	MtrunA17_Chr3g0107381	55.484	155	66	2	1	154	1	153	4.75e-56	175
MsaG014594	MtrunA17_Chr3g0110131	50.323	155	76	1	1	155	1	154	1.07e-42	142
MsaG014594	MtrunA17_Chr2g0283941	43.590	156	88	0	5	160	5	160	4.92e-41	137
MsaG014594	MtrunA17_Chr2g0296861	47.742	155	80	1	1	155	1	154	1.35e-40	134
MsaG014594	MtrunA17_Chr5g0432691	40.260	154	91	1	1	154	1	153	2.45e-38	128
MsaG014594	MtrunA17_Chr8g0351751	41.509	159	91	1	1	157	1	159	1.21e-36	126
MsaG014594	MtrunA17_Chr4g0014321	38.312	154	95	0	1	154	1	154	1.58e-36	125
MsaG014594	MtrunA17_Chr3g0107331	41.060	151	88	1	3	153	2	151	4.89e-34	117
MsaG014594	MtrunA17_Chr4g0014031	43.590	156	88	0	1	156	1	156	1.36e-33	118
MsaG014594	MtrunA17_Chr4g0014131	43.478	161	91	0	1	161	1	161	1.58e-33	118
MsaG014594	MtrunA17_Chr3g0106421	44.697	132	73	0	29	160	1	132	1.86e-33	117
MsaG014594	MtrunA17_Chr2g0296831	51.282	117	57	0	1	117	1	117	3.17e-33	114
MsaG014594	MtrunA17_Chr3g0106501	44.961	129	71	0	29	157	1	129	2.13e-31	110
MsaG014594	MtrunA17_Chr4g0014121	39.744	156	94	0	1	156	29	184	6.95e-31	110
MsaG014594	MtrunA17_Chr5g0420351	38.854	157	94	2	1	157	1	155	1.23e-30	108
MsaG014594	MtrunA17_Chr4g0013041	36.364	154	96	1	1	154	1	152	1.61e-30	109
MsaG014594	MtrunA17_Chr3g0107351	36.774	155	97	1	3	157	2	155	5.82e-30	107
MsaG014594	MtrunA17_Chr1g0188681	40.000	160	88	4	1	157	1	155	1.35e-28	103
MsaG014594	MtrunA17_Chr3g0107341	36.774	155	97	1	3	157	2	155	5.51e-28	102
MsaG014594	MtrunA17_Chr3g0107361	36.774	155	97	1	3	157	2	155	6.99e-28	101
MsaG014594	MtrunA17_Chr1g0197461	34.839	155	99	2	3	157	2	154	3.30e-27	99.8
MsaG014594	MtrunA17_Chr4g0012761	38.217	157	95	2	1	157	1	155	1.09e-25	95.9
MsaG014594	MtrunA17_Chr1g0188661	37.975	158	94	3	1	157	1	155	1.12e-25	95.9
MsaG014594	MtrunA17_Chr7g0218151	36.306	157	98	2	1	157	1	155	4.49e-24	92.0
MsaG014594	MtrunA17_Chr1g0197261	32.911	158	102	3	1	157	1	155	6.47e-24	91.3
MsaG014594	MtrunA17_Chr1g0188651	36.646	161	98	2	1	161	1	157	8.97e-24	90.9
MsaG014594	MtrunA17_Chr1g0193311	36.709	158	96	3	1	157	1	155	1.92e-23	90.1
MsaG014594	MtrunA17_Chr1g0197321	33.333	159	101	3	1	157	1	156	2.05e-23	90.1
MsaG014594	MtrunA17_Chr4g0008701	27.703	148	103	1	3	150	6	149	1.32e-14	70.1
MsaG014594	MtrunA17_Chr7g0267601	28.947	114	81	0	5	118	8	121	2.44e-13	66.6
MsaG014594	MtrunA17_Chr3g0128721	25.490	153	105	2	5	153	8	155	3.33e-12	63.2
MsaG014594	MtrunA17_Chr6g0457851	29.204	113	73	3	1	107	11	122	5.45e-12	62.4
MsaG014594	MtrunA17_Chr1g0212151	28.448	116	76	3	1	110	1	115	1.13e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014594	AT5G48670.1	50.000	156	75	2	1	155	1	154	7.52e-39	134
MsaG014594	AT3G05860.2	41.447	152	84	2	1	150	1	149	1.05e-30	110
MsaG014594	AT1G65330.1	41.892	148	85	1	3	150	2	148	1.56e-30	112
MsaG014594	AT3G05860.3	53.535	99	46	0	1	99	1	99	2.25e-30	110
MsaG014594	AT3G05860.1	53.535	99	46	0	1	99	1	99	3.51e-30	110
MsaG014594	AT1G65300.1	40.127	157	92	2	5	161	4	158	1.24e-29	109
MsaG014594	AT5G27810.1	53.933	89	41	0	29	117	1	89	5.07e-29	103
MsaG014594	AT5G26650.1	36.601	153	96	1	5	157	3	154	1.39e-25	100
MsaG014594	AT5G27960.1	35.294	153	98	1	5	157	3	154	3.07e-24	96.3
MsaG014594	AT1G31640.1	39.623	159	82	4	3	155	2	152	3.63e-23	94.7
MsaG014594	AT1G31630.1	36.129	155	91	4	3	154	2	151	3.70e-23	93.6
MsaG014594	AT1G22590.2	33.750	160	89	2	1	157	1	146	4.40e-23	89.7
MsaG014594	AT2G28700.1	32.667	150	100	1	1	150	1	149	3.98e-21	88.2
MsaG014594	AT5G26630.1	33.548	155	102	1	1	155	1	154	7.10e-21	85.5
MsaG014594	AT5G06500.1	36.364	110	66	1	1	110	1	106	1.79e-18	79.7
MsaG014594	AT2G40210.1	34.653	101	66	0	1	101	1	101	2.81e-14	69.3
MsaG014594	AT5G26580.1	37.624	101	49	1	1	101	1	87	1.23e-13	67.4
MsaG014594	AT3G57230.1	29.012	162	100	4	1	161	1	148	3.54e-12	62.8
MsaG014594	AT3G57230.4	29.012	162	100	4	1	161	1	148	3.54e-12	62.8
MsaG014594	AT3G57230.2	29.825	114	76	2	1	113	1	111	8.83e-11	57.4

Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTGGTCATTTCCTGCTTTC+TGG	0.066665	3:+75703995	None:intergenic
ATTCATACCACAGAATTTAA+TGG	0.196701	3:-75703957	MsaT014594.1:CDS
CAGGTTTGGCCATCAGATTC+AGG	0.224706	3:-75704152	MsaT014594.1:CDS
GTTCAGGAGTTTGCCTGGAC+TGG	0.382826	3:-75704108	MsaT014594.1:CDS
CTGAATCTGATGGCCAAACC+TGG	0.394792	3:+75704153	None:intergenic
GAAGTGTGATATCCAGGTTC+AGG	0.406864	3:-75704124	MsaT014594.1:CDS
GATGAAATTAGCACTCTTTG+CGG	0.413383	3:-75704221	MsaT014594.1:CDS
AATGAAATGATGAATGATAT+TGG	0.442815	3:+75703977	None:intergenic
AGGTTTGGCCATCAGATTCA+GGG	0.444978	3:-75704151	MsaT014594.1:CDS
TCCAGGTTCAGGAGTTTGCC+TGG	0.447666	3:-75704113	MsaT014594.1:CDS
ACAATCCTCAAGCCCAGGTT+TGG	0.451431	3:-75704166	MsaT014594.1:CDS
TATTCTTGAGGCAAAGCATT+GGG	0.452810	3:-75704055	MsaT014594.1:CDS
GAGGACAAATCATTAAGATC+AGG	0.474701	3:+75703918	None:intergenic
GGGTTAGAAGTGTGATATCC+AGG	0.506627	3:-75704130	MsaT014594.1:CDS
CACTATCATGGCTAGAGGTA+AGG	0.508320	3:-75704519	None:intergenic
TCCAGGCAAACTCCTGAACC+TGG	0.517673	3:+75704112	None:intergenic
AAGGAAGGAAACCAGAAAGC+AGG	0.520416	3:-75704006	MsaT014594.1:CDS
CAAATTCTCAGCAATAAAAG+AGG	0.520681	3:+75703899	None:intergenic
TAAATATCCATTAAATTCTG+TGG	0.554522	3:+75703950	None:intergenic
GTATTCTTGAGGCAAAGCAT+TGG	0.555152	3:-75704056	MsaT014594.1:CDS
GATGGCCAAACCTGGGCTTG+AGG	0.558655	3:+75704161	None:intergenic
TTGCTCGTAAATTATTGCAC+CGG	0.562136	3:+75704190	None:intergenic
GCAAAACAATCCTCAAGCCC+AGG	0.573782	3:-75704171	MsaT014594.1:CDS
TGAATCTGATGGCCAAACCT+GGG	0.592740	3:+75704154	None:intergenic
GAGGTCGATCAAAAGATGAA+AGG	0.605953	3:-75703873	MsaT014594.1:CDS
CTTCTAACCCCTGAATCTGA+TGG	0.608216	3:+75704143	None:intergenic
ATGAGCAGTTGATGAAACAA+AGG	0.608842	3:-75704025	MsaT014594.1:CDS
ACTCTTTGCGGAATAGAAGC+CGG	0.612299	3:-75704209	MsaT014594.1:CDS
GGTTTGGCCATCAGATTCAG+GGG	0.621539	3:-75704150	MsaT014594.1:CDS
GCAGTTGATGAAACAAAGGA+AGG	0.627441	3:-75704021	MsaT014594.1:CDS
ACATAACATGTGATTCGAAG+AGG	0.635453	3:-75704484	MsaT014594.1:CDS
TATTGCTGAGAATTTGAGGG+AGG	0.639350	3:-75703892	MsaT014594.1:CDS
TAACATGTGATTCGAAGAGG+AGG	0.648629	3:-75704481	MsaT014594.1:CDS
ATCCTCACTATCATGGCTAG+AGG	0.659018	3:-75704524	None:intergenic
TGGATCAAGAGGTATTCTTG+AGG	0.709854	3:-75704067	MsaT014594.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	75703854	75704534	75703854	ID=MsaG014594
Chr3	mRNA	75703854	75704534	75703854	ID=MsaT014594.1;Parent=MsaG014594
Chr3	exon	75703854	75704260	75703854	ID=MsaT014594.1.exon2;Parent=MsaT014594.1
Chr3	CDS	75703854	75704260	75703854	ID=cds.MsaT014594.1;Parent=MsaT014594.1
Chr3	exon	75704456	75704534	75704456	ID=MsaT014594.1.exon1;Parent=MsaT014594.1
Chr3	CDS	75704456	75704534	75704456	ID=cds.MsaT014594.1;Parent=MsaT014594.1

Gene Sequence

>MsaT014594.1

ATGGCTAGAGGTAAGGTGAAACTAGCATACATAACATGTGATTCGAAGAGGAGGATGACATTCAGAAAGAGAAAAAATGGTATTATGAAGAAGATTGATGAAATTAGCACTCTTTGCGGAATAGAAGCCGGTGCAATAATTTACGAGCAAAACAATCCTCAAGCCCAGGTTTGGCCATCAGATTCAGGGGTTAGAAGTGTGATATCCAGGTTCAGGAGTTTGCCTGGACTGGAACAAAGTAAAAAGATGGTGGATCAAGAGGTATTCTTGAGGCAAAGCATTGGGAAAGTCTATGAGCAGTTGATGAAACAAAGGAAGGAAACCAGAAAGCAGGAAATGACCAATATCATTCATCATTTCATTCATACCACAGAATTTAATGGATATTTAATGAGCAAACCTGATCTTAATGATTTGTCCTCTTTTATTGCTGAGAATTTGAGGGAGGTCGATCAAAAGATGAAAGGAATGTTAATCGAAGATTGA

Protein sequence

>MsaT014594.1

MARGKVKLAYITCDSKRRMTFRKRKNGIMKKIDEISTLCGIEAGAIIYEQNNPQAQVWPSDSGVRSVISRFRSLPGLEQSKKMVDQEVFLRQSIGKVYEQLMKQRKETRKQEMTNIIHHFIHTTEFNGYLMSKPDLNDLSSFIAENLREVDQKMKGMLIED*