AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG014630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG014630 MtrunA17_Chr3g0107701 97.256 911 25 0 1 911 1 911 0.0 1835
MsaG014630 MtrunA17_Chr5g0432721 54.405 840 313 14 1 832 1 778 0.0 824
MsaG014630 MtrunA17_Chr4g0012861 48.552 898 409 16 16 894 19 882 0.0 787
MsaG014630 MtrunA17_Chr2g0281191 42.367 845 384 18 17 828 43 817 0.0 577
MsaG014630 MtrunA17_Chr7g0244871 60.215 93 37 0 331 423 5 97 2.23e-34 127
MsaG014630 MtrunA17_Chr7g0251891 47.059 85 44 1 338 421 16 100 2.27e-19 87.4
MsaG014630 MtrunA17_Chr7g0237841 37.255 102 62 2 338 437 623 724 5.19e-16 82.8
MsaG014630 MtrunA17_Chr1g0178071 36.364 165 80 9 319 469 54 207 6.24e-14 73.9
MsaG014630 MtrunA17_Chr7g0276471 40.659 91 49 3 338 425 117 205 5.57e-13 72.4
MsaG014630 MtrunA17_Chr5g0422501 35.345 116 61 4 338 441 235 348 1.92e-12 70.5
MsaG014630 MtrunA17_Chr8g0345771 38.462 91 51 3 338 425 171 259 2.33e-12 70.5
MsaG014630 MtrunA17_Chr7g0266821 35.338 133 79 5 343 471 65 194 4.83e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG014630 AT2G30470.1 48.047 845 327 22 1 836 6 747 0.0 679
MsaG014630 AT4G32010.2 48.404 752 280 18 15 761 20 668 0.0 649
MsaG014630 AT4G32010.1 48.148 756 280 19 15 761 20 672 0.0 644
MsaG014630 AT4G21550.3 40.000 290 116 6 307 593 294 528 5.83e-55 200
MsaG014630 AT4G21550.3 39.535 86 39 1 17 102 31 103 5.65e-14 76.3
MsaG014630 AT4G21550.1 39.934 303 125 6 307 607 294 541 8.85e-51 191
MsaG014630 AT4G21550.1 39.535 86 39 1 17 102 31 103 2.11e-14 78.2
MsaG014630 AT4G21550.1 39.683 126 68 3 682 804 528 648 8.47e-12 69.7
MsaG014630 AT4G21550.2 39.416 274 109 6 307 578 294 512 3.38e-50 186
MsaG014630 AT4G21550.2 39.535 86 39 1 17 102 31 103 3.07e-14 77.0
MsaG014630 AT3G26790.1 42.308 104 59 1 338 440 91 194 4.86e-20 92.4
MsaG014630 AT3G24650.1 39.216 102 60 2 338 437 571 672 5.00e-16 83.2
MsaG014630 AT1G13260.1 39.091 110 60 4 338 442 187 294 1.71e-14 76.3
MsaG014630 AT1G28300.1 42.529 87 49 1 338 423 170 256 3.18e-14 75.9
MsaG014630 AT2G36080.4 39.815 108 56 4 338 438 37 142 3.23e-14 72.0
MsaG014630 AT2G36080.2 39.815 108 56 4 338 438 37 142 3.23e-14 72.0
MsaG014630 AT2G36080.1 39.815 108 56 4 338 438 37 142 6.24e-14 73.2
MsaG014630 AT1G68840.2 41.935 93 47 3 338 425 187 277 1.51e-13 73.6
MsaG014630 AT1G68840.1 41.935 93 47 3 338 425 187 277 1.51e-13 73.6
MsaG014630 AT4G01500.1 41.573 89 49 2 338 425 35 121 1.70e-13 73.2
MsaG014630 AT2G36080.3 39.815 108 56 4 338 438 37 142 6.20e-13 69.7
MsaG014630 AT5G06250.4 30.049 203 114 8 327 510 37 230 8.95e-13 70.5
MsaG014630 AT5G06250.2 30.049 203 114 8 327 510 37 230 8.97e-13 70.5
MsaG014630 AT5G06250.5 30.049 203 114 8 327 510 37 230 9.01e-13 70.1
MsaG014630 AT5G06250.3 33.557 149 76 6 327 457 37 180 9.26e-13 70.1
MsaG014630 AT5G06250.1 33.557 149 76 6 327 457 37 180 1.09e-12 69.7
MsaG014630 AT3G61970.1 39.362 94 49 3 338 425 22 113 1.19e-12 70.1
MsaG014630 AT2G46870.1 39.560 91 50 3 338 425 34 122 1.34e-12 70.1
MsaG014630 AT1G01030.2 39.560 91 50 3 338 425 55 143 6.40e-12 68.6
MsaG014630 AT1G01030.1 39.560 91 50 3 338 425 55 143 7.44e-12 68.6
MsaG014630 AT3G11580.4 38.235 102 47 3 338 425 28 127 2.49e-11 65.1
MsaG014630 AT3G11580.2 38.235 102 47 3 338 425 28 127 2.49e-11 65.1
MsaG014630 AT3G11580.5 38.235 102 47 3 338 425 28 127 2.49e-11 65.1

Find 246 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATCCCTTGCATTATTT+TGG 0.089803 3:+76238993 None:intergenic
TTCCTGCCATGCTAGATTTA+TGG 0.194588 3:-76241204 MsaT014630.1:intron
CGGTTCTTGGACCGCCATTT+TGG 0.204307 3:+76234630 None:intergenic
CAAACCTCAGCACAGGCTTT+TGG 0.237261 3:+76237787 None:intergenic
AAAAGTAAGAGATTGCTTAT+TGG 0.238596 3:-76236719 MsaT014630.1:CDS
ATGAATATAGAAACTGAAAA+AGG 0.252818 3:-76238512 MsaT014630.1:CDS
AACAACATGATTACATCTAA+TGG 0.257026 3:-76238854 MsaT014630.1:CDS
TCTGACATTGGTATGGTAAA+TGG 0.260179 3:-76241890 MsaT014630.1:CDS
CAAAACTTAGTGATCATATA+TGG 0.264606 3:-76234670 MsaT014630.1:CDS
GAACCTTCACATTTGGTTAC+TGG 0.267943 3:-76236848 MsaT014630.1:CDS
GATGTAATCATGTTGTTTAT+CGG 0.277647 3:+76238860 None:intergenic
ACCAGTTACTTCCTAGATAT+TGG 0.285392 3:-76238436 MsaT014630.1:CDS
AGCCAGAAGGCTCGTGTTCT+TGG 0.294965 3:+76235140 None:intergenic
CTCTGAAGGTCTTCCTTTGC+GGG 0.296256 3:-76237581 MsaT014630.1:CDS
GGAAGGTCAACATTCTTCTT+TGG 0.296343 3:-76234591 MsaT014630.1:CDS
TACATCCTGCTGTTGTTATT+AGG 0.296564 3:+76237511 None:intergenic
GGCCCTGCTGATTCCGCAGC+TGG 0.302776 3:-76235073 MsaT014630.1:CDS
TTCTCCTAAAACGGCTAAAC+TGG 0.304782 3:+76235105 None:intergenic
GGTTTGCTTAAAGCCGAAAA+TGG 0.307447 3:-76236818 MsaT014630.1:CDS
GTCGATGAAACGGGCCATTT+AGG 0.307880 3:+76239016 None:intergenic
ATCTTCAGCGCCTCTTCATC+TGG 0.309531 3:-76236391 MsaT014630.1:CDS
ATTTCAGTATTAACGGTTCT+TGG 0.327294 3:+76234617 None:intergenic
TAGATATTGGCCTAGGATTA+CGG 0.327990 3:-76238423 MsaT014630.1:CDS
TATTGGTAATGATGATTCTA+TGG 0.330411 3:-76236702 MsaT014630.1:CDS
CATATTAATATGAACCAAAA+TGG 0.335008 3:-76234644 MsaT014630.1:CDS
GTAATACTGAAAATCCTAAA+TGG 0.335624 3:-76239030 MsaT014630.1:CDS
GCCGTCTTTGAATATGTGTT+TGG 0.340861 3:-76238678 MsaT014630.1:CDS
TATCTTGACTTCGGCGGTAT+AGG 0.341914 3:-76240218 MsaT014630.1:CDS
TCTTTGGCCACTCAATCTAA+TGG 0.347543 3:-76234575 MsaT014630.1:CDS
ATCCAAGAACACGAGCCTTC+TGG 0.347833 3:-76235142 MsaT014630.1:CDS
TTTAACAGTTTGGGTAATAT+AGG 0.349411 3:+76238548 None:intergenic
CTCTAAATGGAGAAAGTTAC+CGG 0.350506 3:-76235638 MsaT014630.1:CDS
AAATACTTCCCAACTAAATA+TGG 0.354913 3:-76240180 MsaT014630.1:intron
AAGAAGTTAGGCCGTCATTC+AGG 0.358196 3:-76238820 MsaT014630.1:CDS
ATTCATTACCCTTCACATCT+TGG 0.362672 3:+76237557 None:intergenic
CGAGCTGAGCTCAAGGGAAT+TGG 0.363584 3:-76235428 MsaT014630.1:CDS
TTCCTGCATTTCAGTATTAA+CGG 0.365173 3:+76234610 None:intergenic
CAGGAGCTGGAGCGTTTGTC+TGG 0.368698 3:-76238398 MsaT014630.1:CDS
GCCAATATCTAGGAAGTAAC+TGG 0.374292 3:+76238435 None:intergenic
AATGTGATGATTGCTCTAAA+TGG 0.377625 3:-76235651 MsaT014630.1:CDS
AAGAAGAGGACTCGAAATAT+TGG 0.381088 3:-76236746 MsaT014630.1:CDS
CCACGTATTGCCCGGCCTCC+TGG 0.384562 3:-76238476 MsaT014630.1:CDS
TCCGTTCACCAAATGGTAAC+GGG 0.384737 3:-76236895 MsaT014630.1:CDS
GGACATGTTCGGAAAATGTC+TGG 0.386985 3:-76235591 MsaT014630.1:CDS
ACATCCTGAACCTTCACATT+TGG 0.390011 3:-76236855 MsaT014630.1:CDS
TCATTCAGGGAAGGGGATAC+TGG 0.395233 3:-76238806 MsaT014630.1:CDS
CGAAGTTCCCCGTTACCATT+TGG 0.395408 3:+76236887 None:intergenic
CCGTCTTTGAATATGTGTTT+GGG 0.395837 3:-76238677 MsaT014630.1:CDS
ACAACATGATTACATCTAAT+GGG 0.396289 3:-76238853 MsaT014630.1:CDS
AAGAGAAGTTGCGAATCCTT+TGG 0.400555 3:-76234804 MsaT014630.1:CDS
CCCTCCCATCACCAGGAGGC+CGG 0.404115 3:+76238465 None:intergenic
GATTTACGTGCTGGTGATAC+TGG 0.406488 3:-76237451 MsaT014630.1:intron
ACTCTGAAGGTCTTCCTTTG+CGG 0.407452 3:-76237582 MsaT014630.1:CDS
TCTTTCTTTGTTCCCAACAT+TGG 0.407495 3:+76234511 None:intergenic
TCCCTTGAGCTCAGCTCGTC+CGG 0.408864 3:+76235433 None:intergenic
TTATCGGAGCATGACTCATA+TGG 0.413523 3:+76238876 None:intergenic
ATTGCCCGGCCTCCTGGTGA+TGG 0.413820 3:-76238470 MsaT014630.1:CDS
GCTCCAGCTGCGGAATCAGC+AGG 0.415699 3:+76235070 None:intergenic
TTCTTTCCCCTCCCATCACC+AGG 0.417959 3:+76238458 None:intergenic
ATTCAGCCACCAAGCGGAAA+AGG 0.418817 3:-76234998 MsaT014630.1:CDS
GACAATGCTTGGCTTGACAC+TGG 0.420212 3:+76236631 None:intergenic
AACGGGGAACTTCGCTCAAA+TGG 0.422522 3:-76236878 MsaT014630.1:CDS
TTAAACTTACCATATTTAGT+TGG 0.425360 3:+76240171 None:intergenic
TCTACATCCGCACATTCTAA+TGG 0.425785 3:-76236992 MsaT014630.1:CDS
TCCTCGATTGTGACAATGCT+TGG 0.426368 3:+76236620 None:intergenic
ATGTGTTTGGGAAACCCGTC+AGG 0.426949 3:-76238665 MsaT014630.1:CDS
GTAACCAAATGTGAAGGTTC+AGG 0.430266 3:+76236851 None:intergenic
ACCAATCCGACCTGCATCAC+TGG 0.431125 3:+76237822 None:intergenic
CTCAACTTTGCTTCAAGTGC+GGG 0.431608 3:-76241814 MsaT014630.1:intron
CATTTGGTTACTGGAGCTGC+TGG 0.436882 3:-76236839 MsaT014630.1:CDS
ACATTTAGTCGGATAGATCC+TGG 0.438208 3:-76237184 MsaT014630.1:CDS
GTGCTGAGCGCCAGTGATGC+AGG 0.439810 3:-76237832 MsaT014630.1:CDS
TCCTCCCAAGTGGACATGTT+CGG 0.442585 3:-76235602 MsaT014630.1:CDS
ATTCTCATTTCCACCAGAAA+AGG 0.446971 3:+76236949 None:intergenic
CGGCCTCCTGGTGATGGGAG+GGG 0.449299 3:-76238464 MsaT014630.1:CDS
GGGTGTGACCCCTTGTATAC+AGG 0.451818 3:-76237479 MsaT014630.1:CDS
AACAACTCTTTCCCACCATC+TGG 0.452851 3:-76238641 MsaT014630.1:CDS
TAAACTTACCATATTTAGTT+GGG 0.454535 3:+76240172 None:intergenic
CCTCCCATCACCAGGAGGCC+GGG 0.454674 3:+76238466 None:intergenic
GCAAAAGTTAATGACTGAAC+AGG 0.455178 3:+76238761 None:intergenic
CCGGCCTCCTGGTGATGGGA+GGG 0.455490 3:-76238465 MsaT014630.1:CDS
AAATCCATGGCCTGTATACA+AGG 0.462450 3:+76237469 None:intergenic
AAATTCCATCGTCAACAAAC+TGG 0.467730 3:-76240404 MsaT014630.1:CDS
TTCTCTTGATGCTCCACCAT+TGG 0.470671 3:+76234820 None:intergenic
CAGTTTCTATATTCATGGTA+AGG 0.470982 3:+76238519 None:intergenic
ATGGTTCGTGCGTTCATGAA+TGG 0.472417 3:-76241871 MsaT014630.1:CDS
AAAGGGTGGGGTTTACGATC+TGG 0.472704 3:-76241845 MsaT014630.1:CDS
TAGGATTACGGACCAGGAGC+TGG 0.472738 3:-76238411 MsaT014630.1:CDS
AAGATCTATCTTTCCAGCGC+TGG 0.475080 3:+76234736 None:intergenic
GATGCATTGCATCCAATGTT+GGG 0.477504 3:-76234523 MsaT014630.1:CDS
GGAAAGAGTTGTTCCCTGAC+GGG 0.480170 3:+76238651 None:intergenic
GATCTTCTCCGTTCACCAAA+TGG 0.483108 3:-76236902 MsaT014630.1:CDS
CTATGGAGTTGAGACTTACA+TGG 0.484609 3:-76236685 MsaT014630.1:CDS
AGAAGTTAGGCCGTCATTCA+GGG 0.485967 3:-76238819 MsaT014630.1:CDS
CCTTCAGAGTGTGTAATATG+AGG 0.486209 3:+76237595 None:intergenic
CACTTGCGAGTCATCGCGAT+TGG 0.487038 3:+76234703 None:intergenic
CTTGGCTTGACACTGGGCGG+TGG 0.487076 3:+76236638 None:intergenic
CCCCGTTACCATTTGGTGAA+CGG 0.487521 3:+76236894 None:intergenic
CAACAGCAGGATGTACGTAT+TGG 0.488320 3:-76237503 MsaT014630.1:CDS
AACTATTTCGTCCAGGGTGA+AGG 0.490506 3:-76235686 MsaT014630.1:intron
CCCGGCCTCCTGGTGATGGG+AGG 0.490582 3:-76238466 MsaT014630.1:CDS
TACTTCCTAGATATTGGCCT+AGG 0.490891 3:-76238430 MsaT014630.1:CDS
TGCGTTCATGAATGGAAGAA+AGG 0.491886 3:-76241863 MsaT014630.1:CDS
CACCGGACGAGCTGAGCTCA+AGG 0.494872 3:-76235435 MsaT014630.1:CDS
CAGACAAACGCTCCAGCTCC+TGG 0.495028 3:+76238399 None:intergenic
TTGCCCGGCCTCCTGGTGAT+GGG 0.496379 3:-76238469 MsaT014630.1:CDS
AACCGTTAATACTGAAATGC+AGG 0.496893 3:-76234612 MsaT014630.1:CDS
CTCAGCACCTTCTCAAACAA+TGG 0.497650 3:+76237847 None:intergenic
GAACAGCCGGGACGGTGTCT+AGG 0.499276 3:+76235034 None:intergenic
TTCAGCCACCAAGCGGAAAA+GGG 0.500074 3:-76234997 MsaT014630.1:CDS
ATTCAGCTTTAGAGAAGAAG+AGG 0.500319 3:-76236760 MsaT014630.1:CDS
AAAACTTAGTGATCATATAT+GGG 0.505964 3:-76234669 MsaT014630.1:CDS
GGGAAAGAGTTGTTCCCTGA+CGG 0.506096 3:+76238650 None:intergenic
TTCTAATGGCGGTTCTGCAA+AGG 0.510425 3:-76236978 MsaT014630.1:CDS
TCTAATGGCGGTTCTGCAAA+GGG 0.512085 3:-76236977 MsaT014630.1:CDS
ACTACAGACGGAAGACTTGA+GGG 0.517542 3:-76238611 MsaT014630.1:CDS
GATCTCGGCCCTTGATGAAA+GGG 0.518190 3:+76238575 None:intergenic
GTAATCCTAGGCCAATATCT+AGG 0.520534 3:+76238425 None:intergenic
TTTGGCCTAATAACAACAGC+AGG 0.525991 3:-76237516 MsaT014630.1:CDS
TTGGCCTAGGATTACGGACC+AGG 0.525994 3:-76238417 MsaT014630.1:CDS
ACAATGCTTGGCTTGACACT+GGG 0.526210 3:+76236632 None:intergenic
CATTTAGTCGGATAGATCCT+GGG 0.527144 3:-76237183 MsaT014630.1:CDS
ATGCTCTTCTTCCTCCCAAG+TGG 0.528369 3:-76235612 MsaT014630.1:CDS
AGAAAATAATAGACCAGCAT+GGG 0.528624 3:-76238732 MsaT014630.1:CDS
GCACACAATACAAGAACAGC+CGG 0.529568 3:+76235021 None:intergenic
AAGATGTGAAGGGTAATGAA+TGG 0.530191 3:-76237555 MsaT014630.1:CDS
GATGATGAGCAATAATTCAC+TGG 0.530716 3:-76236792 MsaT014630.1:CDS
AGATGCATTGCATCCAATGT+TGG 0.530925 3:-76234524 MsaT014630.1:CDS
AACGAAGGAGGACTAAATAG+AGG 0.534232 3:-76234779 MsaT014630.1:CDS
GGATGCAATGCATCTTTCAT+CGG 0.534582 3:+76234532 None:intergenic
GCCAGTGATGCAGGTCGGAT+TGG 0.535624 3:-76237823 MsaT014630.1:CDS
AGCTCCTGGTCCGTAATCCT+AGG 0.537010 3:+76238413 None:intergenic
AGATCTCGGCCCTTGATGAA+AGG 0.538168 3:+76238574 None:intergenic
CTCCGTTCACCAAATGGTAA+CGG 0.539360 3:-76236896 MsaT014630.1:CDS
GACCCCTTGTATACAGGCCA+TGG 0.540366 3:-76237473 MsaT014630.1:CDS
GCGTTCATGAATGGAAGAAA+GGG 0.540835 3:-76241862 MsaT014630.1:CDS
GAGGTTGGCGAGTCCAGCGC+TGG 0.541207 3:-76234749 MsaT014630.1:CDS
TTTATGAGTAATGTTGATGA+AGG 0.541550 3:-76238944 MsaT014630.1:CDS
CAGCAGGATGTACGTATTGG+AGG 0.545399 3:-76237500 MsaT014630.1:CDS
CAGGCCATGGATTTACGTGC+TGG 0.546070 3:-76237460 MsaT014630.1:CDS
GACTACAGACGGAAGACTTG+AGG 0.549307 3:-76238612 MsaT014630.1:CDS
GGAAATGAGAATCTTCCATC+GGG 0.550758 3:-76236938 MsaT014630.1:CDS
ACTTGCGAGTCATCGCGATT+GGG 0.551611 3:+76234704 None:intergenic
GTATCTCCTCCCTTTCATCA+AGG 0.552113 3:-76238584 MsaT014630.1:CDS
GGAGGAAGAAGAGCATCAAC+CGG 0.553613 3:+76235619 None:intergenic
TTTCTCAACCACGTATTGCC+CGG 0.553774 3:-76238484 MsaT014630.1:CDS
CATGAATGGAAGAAAGGGTG+GGG 0.559019 3:-76241857 MsaT014630.1:CDS
TTTATACTTACAATGTGTCA+AGG 0.561809 3:+76241162 None:intergenic
ATGCTAGATTTATGGAGGAA+TGG 0.562703 3:-76241196 MsaT014630.1:intron
AACTCTTTCCCACCATCTGG+TGG 0.563581 3:-76238638 MsaT014630.1:CDS
CATCGACCCAAAATAATGCA+AGG 0.564184 3:-76239000 MsaT014630.1:CDS
TTCATGAATGGAAGAAAGGG+TGG 0.564955 3:-76241859 MsaT014630.1:CDS
CTGCCATGCTAGATTTATGG+AGG 0.565186 3:-76241201 MsaT014630.1:intron
GCCAACCAGTTTGTTGACGA+TGG 0.565303 3:+76240399 None:intergenic
GGTAATATAGGACGAGATCT+CGG 0.567868 3:+76238560 None:intergenic
TCTTCAGCGCCTCTTCATCT+GGG 0.569422 3:-76236390 MsaT014630.1:intron
CCTCATATTACACACTCTGA+AGG 0.570324 3:-76237595 MsaT014630.1:CDS
TGATTGATGGGTTCTGACAT+TGG 0.570447 3:-76241902 None:intergenic
AAAATGTCTGGGATACAAGC+AGG 0.570539 3:-76235579 MsaT014630.1:intron
ATCCTCACCATTAGATTGAG+TGG 0.573526 3:+76234568 None:intergenic
TCTGTAGTCTCTCCACCAGA+TGG 0.577437 3:+76238626 None:intergenic
GATGGGTTCTGACATTGGTA+TGG 0.579449 3:-76241897 MsaT014630.1:CDS
TAGAAAATAATAGACCAGCA+TGG 0.580283 3:-76238733 MsaT014630.1:CDS
CAGATCTTCATGTTCCGCAC+CGG 0.581032 3:-76235452 MsaT014630.1:CDS
ACTACGCATCCACTGTGGAT+AGG 0.582032 3:+76240260 None:intergenic
GAACAAAGAAAGAAGAGATG+AGG 0.583288 3:-76234501 MsaT014630.1:CDS
AGTAGTGCCATTGTTTGAGA+AGG 0.585604 3:-76237854 MsaT014630.1:CDS
TATCTCCTCCCTTTCATCAA+GGG 0.585643 3:-76238583 MsaT014630.1:CDS
GACATGTTCGGAAAATGTCT+GGG 0.586198 3:-76235590 MsaT014630.1:CDS
TAGGCCGTCATTCAGGGAAG+GGG 0.586518 3:-76238813 MsaT014630.1:CDS
TTCACATCTTGGACCCGCAA+AGG 0.587006 3:+76237568 None:intergenic
TTTATGGAGGAATGGAAGAG+TGG 0.587962 3:-76241188 MsaT014630.1:CDS
CACACGTTGCAAGTACATGT+TGG 0.588233 3:+76234965 None:intergenic
AATAGAGGTCAAGTTGAGGT+TGG 0.588262 3:-76234764 MsaT014630.1:CDS
GCTCAACTTTGCTTCAAGTG+CGG 0.588515 3:-76241815 MsaT014630.1:CDS
TTTGCGGGTCCAAGATGTGA+AGG 0.588681 3:-76237566 MsaT014630.1:CDS
TCTCCCAAAAGCCTGTGCTG+AGG 0.589766 3:-76237791 MsaT014630.1:intron
TTAGGCCGTCATTCAGGGAA+GGG 0.591509 3:-76238814 MsaT014630.1:CDS
CCAGGAGGCCGGGCAATACG+TGG 0.593982 3:+76238476 None:intergenic
TCCATCGTCAACAAACTGGT+TGG 0.594004 3:-76240400 MsaT014630.1:CDS
CCCAAACACATATTCAAAGA+CGG 0.594377 3:+76238677 None:intergenic
GTAGTCTCTCCACCAGATGG+TGG 0.595253 3:+76238629 None:intergenic
TCCGAACATGTCCACTTGGG+AGG 0.595376 3:+76235601 None:intergenic
ATTTGGTGAACGGAGAAGAT+CGG 0.599027 3:+76236904 None:intergenic
TCATGAATGGAAGAAAGGGT+GGG 0.601633 3:-76241858 MsaT014630.1:CDS
ATCACCAGCACGTAAATCCA+TGG 0.602400 3:+76237456 None:intergenic
ATCGACCCAAAATAATGCAA+GGG 0.604714 3:-76238999 MsaT014630.1:CDS
GGACTCTTACCCAGATGAAG+AGG 0.605539 3:+76236381 None:intergenic
CTGTTCGAGTATCTTGACTT+CGG 0.606779 3:-76240227 MsaT014630.1:CDS
GTTAGGCCGTCATTCAGGGA+AGG 0.607605 3:-76238815 MsaT014630.1:CDS
AGTGAAAAGAATCTGTCTTG+AGG 0.609919 3:-76234458 None:intergenic
CAATCGCGATGACTCGCAAG+TGG 0.610051 3:-76234702 MsaT014630.1:CDS
TGGAAATGAGAATCTTCCAT+CGG 0.610250 3:-76236939 MsaT014630.1:CDS
GTCCAGGGTGAAGGAACAGT+GGG 0.610789 3:-76235677 MsaT014630.1:intron
GTGACCAACCTGTGTATCTA+CGG 0.615162 3:+76237123 None:intergenic
ATTTAGTCGGATAGATCCTG+GGG 0.615648 3:-76237182 MsaT014630.1:CDS
ACGGTGTCTAGGATGTTTCG+TGG 0.616806 3:+76235045 None:intergenic
TAGTCTCTCCACCAGATGGT+GGG 0.617495 3:+76238630 None:intergenic
ACCGGACGAGCTGAGCTCAA+GGG 0.618173 3:-76235434 MsaT014630.1:CDS
GGCCACTCAATCTAATGGTG+AGG 0.620775 3:-76234570 MsaT014630.1:CDS
TGAGCTCAGCTCGTCCGGTG+CGG 0.620796 3:+76235438 None:intergenic
CTCCAGCTGCGGAATCAGCA+GGG 0.621499 3:+76235071 None:intergenic
AGCAGGATGTACGTATTGGA+GGG 0.621631 3:-76237499 MsaT014630.1:CDS
CTCGGCCCTTGATGAAAGGG+AGG 0.622138 3:+76238578 None:intergenic
ATCAAACTCCGTAGATACAC+AGG 0.624497 3:-76237131 MsaT014630.1:intron
CAATACAAGAACAGCCGGGA+CGG 0.625906 3:+76235026 None:intergenic
TATGGAGTTGAGACTTACAT+GGG 0.625949 3:-76236684 MsaT014630.1:CDS
TGTGTACGACCGTGAAGCGT+CGG 0.626839 3:-76234946 MsaT014630.1:CDS
GCGAATCCTTTGGAAAACGA+AGG 0.630328 3:-76234794 MsaT014630.1:CDS
CGTCCAGGGTGAAGGAACAG+TGG 0.639116 3:-76235678 MsaT014630.1:intron
GCCAAGCATTGTCACAATCG+AGG 0.639692 3:-76236621 MsaT014630.1:CDS
GCGAGAGCGTCTAAGCCAGA+AGG 0.639894 3:+76235127 None:intergenic
GGGTGGGGTTTACGATCTGG+TGG 0.639993 3:-76241842 MsaT014630.1:CDS
ATCCATGGCCTGTATACAAG+GGG 0.641805 3:+76237471 None:intergenic
TTCGAGTATCTTGACTTCGG+CGG 0.643639 3:-76240224 MsaT014630.1:CDS
TGAGCGCCAGTGATGCAGGT+CGG 0.646060 3:-76237828 MsaT014630.1:CDS
GACGAGTCAGATACCAATGG+TGG 0.646113 3:-76234833 MsaT014630.1:CDS
TCGGCACAATTACTTCCCGA+TGG 0.647760 3:+76236923 None:intergenic
AATCCTTTGGAAAACGAAGG+AGG 0.647862 3:-76234791 MsaT014630.1:CDS
AATCCATGGCCTGTATACAA+GGG 0.649731 3:+76237470 None:intergenic
ATGCTTGGCTTGACACTGGG+CGG 0.650343 3:+76236635 None:intergenic
GTATCCCCTTCCCTGAATGA+CGG 0.651045 3:+76238809 None:intergenic
AAAGTTAATGACTGAACAGG+CGG 0.651260 3:+76238764 None:intergenic
CAGTCCGCTGTCAAAATGAG+CGG 0.652887 3:+76238967 None:intergenic
AGAGTGTAACATTTGCAACA+AGG 0.654770 3:-76240375 MsaT014630.1:intron
GCTCCAGTAACCAAATGTGA+AGG 0.655029 3:+76236845 None:intergenic
ATTAATATGAACCAAAATGG+CGG 0.658414 3:-76234641 MsaT014630.1:CDS
ACTAAATAGAGGTCAAGTTG+AGG 0.658544 3:-76234768 MsaT014630.1:CDS
CTCAAACAATGGCACTACTG+TGG 0.661874 3:+76237858 None:intergenic
GTTAATACTGAAATGCAGGA+AGG 0.667799 3:-76234608 MsaT014630.1:CDS
AGAACCGCCATTAGAATGTG+CGG 0.667900 3:+76236985 None:intergenic
ACATCCGCACATTCTAATGG+CGG 0.668876 3:-76236989 MsaT014630.1:CDS
AAACATCCTAGACACCGTCC+CGG 0.669264 3:-76235040 MsaT014630.1:CDS
TTTCGTGGTAGCTCCAGCTG+CGG 0.669691 3:+76235060 None:intergenic
TCTGGTGGAGAGACTACAGA+CGG 0.671314 3:-76238623 MsaT014630.1:CDS
TGTGTTTGGGAAACCCGTCA+GGG 0.671474 3:-76238664 MsaT014630.1:CDS
GCATGCATGAATCAAATGCG+AGG 0.672254 3:-76238700 MsaT014630.1:CDS
CCGTTCACCAAATGGTAACG+GGG 0.672434 3:-76236894 MsaT014630.1:CDS
TTGCGGGTCCAAGATGTGAA+GGG 0.674468 3:-76237565 MsaT014630.1:CDS
GTGTGCATTCAGCCACCAAG+CGG 0.679152 3:-76235004 MsaT014630.1:CDS
GTTCTGCAGCCTATCCACAG+TGG 0.681151 3:-76240269 MsaT014630.1:intron
CACACAATACAAGAACAGCC+GGG 0.682528 3:+76235022 None:intergenic
TTTCCCCTCCCATCACCAGG+AGG 0.684474 3:+76238461 None:intergenic
GTTGACGAGTCAGATACCAA+TGG 0.701417 3:-76234836 MsaT014630.1:CDS
TAGATACTACGCATCCACTG+TGG 0.761062 3:+76240255 None:intergenic
TTTAGTCGGATAGATCCTGG+GGG 0.790573 3:-76237181 MsaT014630.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 76234460 76241918 76234460 ID=MsaG014630
Chr3 mRNA 76234460 76241918 76234460 ID=MsaT014630.1;Parent=MsaG014630
Chr3 exon 76234460 76235202 76234460 ID=MsaT014630.1.exon13;Parent=MsaT014630.1
Chr3 CDS 76234460 76235202 76234460 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76235404 76235471 76235404 ID=MsaT014630.1.exon12;Parent=MsaT014630.1
Chr3 CDS 76235404 76235471 76235404 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76235580 76235693 76235580 ID=MsaT014630.1.exon11;Parent=MsaT014630.1
Chr3 CDS 76235580 76235693 76235580 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76236391 76236440 76236391 ID=MsaT014630.1.exon10;Parent=MsaT014630.1
Chr3 CDS 76236391 76236440 76236391 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76236598 76237020 76236598 ID=MsaT014630.1.exon9;Parent=MsaT014630.1
Chr3 CDS 76236598 76237020 76236598 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76237132 76237208 76237132 ID=MsaT014630.1.exon8;Parent=MsaT014630.1
Chr3 CDS 76237132 76237208 76237132 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76237452 76237626 76237452 ID=MsaT014630.1.exon7;Parent=MsaT014630.1
Chr3 CDS 76237452 76237626 76237452 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76237792 76237888 76237792 ID=MsaT014630.1.exon6;Parent=MsaT014630.1
Chr3 CDS 76237792 76237888 76237792 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76238395 76239056 76238395 ID=MsaT014630.1.exon5;Parent=MsaT014630.1
Chr3 CDS 76238395 76239056 76238395 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76240181 76240282 76240181 ID=MsaT014630.1.exon4;Parent=MsaT014630.1
Chr3 CDS 76240181 76240282 76240181 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76240376 76240457 76240376 ID=MsaT014630.1.exon3;Parent=MsaT014630.1
Chr3 CDS 76240376 76240457 76240376 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76241173 76241211 76241173 ID=MsaT014630.1.exon2;Parent=MsaT014630.1
Chr3 CDS 76241173 76241211 76241173 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Chr3 exon 76241815 76241918 76241815 ID=MsaT014630.1.exon1;Parent=MsaT014630.1
Chr3 CDS 76241815 76241918 76241815 ID=cds.MsaT014630.1;Parent=MsaT014630.1
Gene Sequence

>MsaT014630.1

ATGGGTTCTGACATTGGTATGGTAAATGGTTCGTGCGTTCATGAATGGAAGAAAGGGTGGGGTTTACGATCTGGTGGATTTGCTCAACTTTGCTTCAAGTGCGGATTTATGGAGGAATGGAAGAGTGGCAACCTTGACACATTATCTTCCTTTGAGAGTTCAGTTTTTTGTAATAAATTCCATCGTCAACAAACTGGTTGGCGAGAGTGTAACATTTGCAACAAGCCTATCCACAGTGGATGCGTAGTATCTAAATCTCTGTTCGAGTATCTTGACTTCGGCGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACTAAATATGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATCGACCCAAAATAATGCAAGGGATATTCATTCCGCTCATTTTGACAGCGGACTGTTTATGAGTAATGTTGATGAAGGAAAGCTTATGCAATTATGCAGAGTTGTTGAAGCTAGTGAATCTATCCATATGAGTCATGCTCCGATAAACAACATGATTACATCTAATGGGAAAAACAATCAAGAAGTTAGGCCGTCATTCAGGGAAGGGGATACTGGATTTTCAAATGTGATTAAACCGCCTGTTCAGTCATTAACTTTTGCCACGTTAGAAAATAATAGACCAGCATGGGAGATTAAAAGCATGCATGAATCAAATGCGAGGCCGTCTTTGAATATGTGTTTGGGAAACCCGTCAGGGAACAACTCTTTCCCACCATCTGGTGGAGAGACTACAGACGGAAGACTTGAGGGAAAAGTATCTCCTCCCTTTCATCAAGGGCCGAGATCTCGTCCTATATTACCCAAACTGTTAAAAACTGGCCTTACCATGAATATAGAAACTGAAAAAGGGACACTTTCTCAACCACGTATTGCCCGGCCTCCTGGTGATGGGAGGGGAAAGAACCAGTTACTTCCTAGATATTGGCCTAGGATTACGGACCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAGTCCACAGTAGTGCCATTGTTTGAGAAGGTGCTGAGCGCCAGTGATGCAGGTCGGATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCATATTACACACTCTGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGTAATGAATGGACTTTTCAATTCAGATTTTGGCCTAATAACAACAGCAGGATGTACGTATTGGAGGGTGTGACCCCTTGTATACAGGCCATGGATTTACGTGCTGGTGATACTGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGTCATCAAACTCCGTAGATACACAGGATGCTTCTACATCCGCACATTCTAATGGCGGTTCTGCAAAGGGAGACGCCTTTTCTGGTGGAAATGAGAATCTTCCATCGGGAAGTAATTGTGCCGATCTTCTCCGTTCACCAAATGGTAACGGGGAACTTCGCTCAAATGGACATCCTGAACCTTCACATTTGGTTACTGGAGCTGCTGGTTTGCTTAAAGCCGAAAATGGCGAGATGATGAGCAATAATTCACTGGACCAAAAAAATTCAGCTTTAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGATTGCTTATTGGTAATGATGATTCTATGGAGTTGAGACTTACATGGGAAGAAGCACAAGACTTGCTTCGTCCACCGCCCAGTGTCAAGCCAAGCATTGTCACAATCGAGGATCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACAATCTTCAGCGCCTCTTCATCTGGGGTGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGTTACCGGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCGGAAAATGTCTGGGATACAAGCAGATCTTCATGTTCCGCACCGGACGAGCTGAGCTCAAGGGAATTGGAAAATCTTTTGAAATCTAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGACGCTCTCGCCAGTTTAGCCGTTTTAGGAGAAAATCTCTTGGGCCCTGCTGATTCCGCAGCTGGAGCTACCACGAAACATCCTAGACACCGTCCCGGCTGTTCTTGTATTGTGTGCATTCAGCCACCAAGCGGAAAAGGGAGACACAAGCCAACATGTACTTGCAACGTGTGTACGACCGTGAAGCGTCGGTTCAAAACGCTTATGCTACGCAAGAAGAAACGACAATCAGAGCGTGAAGCAGATGCCGCCGCCAAAAAAGAACACATTCACAACAGAGTTGACGAGTCAGATACCAATGGTGGAGCATCAAGAGAAGTTGCGAATCCTTTGGAAAACGAAGGAGGACTAAATAGAGGTCAAGTTGAGGTTGGCGAGTCCAGCGCTGGAAAGATAGATCTTAATTGTCATCCCAATCGCGATGACTCGCAAGTGGATAATGTAGCAAAACTTAGTGATCATATATGGGAACATATTAATATGAACCAAAATGGCGGTCCAAGAACCGTTAATACTGAAATGCAGGAAGGTCAACATTCTTCTTTGGCCACTCAATCTAATGGTGAGGATACGAGACACTTGTCCGATGAAAGATGCATTGCATCCAATGTTGGGAACAAAGAAAGAAGAGATGAGGTATTAAATCATTCAAATGAAAGTGAAAAGAATCTGTCTTGA

Protein sequence

>MsaT014630.1

MGSDIGMVNGSCVHEWKKGWGLRSGGFAQLCFKCGFMEEWKSGNLDTLSSFESSVFCNKFHRQQTGWRECNICNKPIHSGCVVSKSLFEYLDFGGIGCVSCVNTSQLNMIRNTENPKWPVSSTQNNARDIHSAHFDSGLFMSNVDEGKLMQLCRVVEASESIHMSHAPINNMITSNGKNNQEVRPSFREGDTGFSNVIKPPVQSLTFATLENNRPAWEIKSMHESNARPSLNMCLGNPSGNNSFPPSGGETTDGRLEGKVSPPFHQGPRSRPILPKLLKTGLTMNIETEKGTLSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHITHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMDLRAGDTVTFSRIDPGGKLVMGFRKSSNSVDTQDASTSAHSNGGSAKGDAFSGGNENLPSGSNCADLLRSPNGNGELRSNGHPEPSHLVTGAAGLLKAENGEMMSNNSLDQKNSALEKKRTRNIGLKSKRLLIGNDDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGVKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSAPDELSSRELENLLKSSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENLLGPADSAAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKEHIHNRVDESDTNGGASREVANPLENEGGLNRGQVEVGESSAGKIDLNCHPNRDDSQVDNVAKLSDHIWEHINMNQNGGPRTVNTEMQEGQHSSLATQSNGEDTRHLSDERCIASNVGNKERRDEVLNHSNESEKNLS*