Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014775 | XP_003600664.2 | 97.425 | 466 | 3 | 5 | 1 | 461 | 1 | 462 | 0.0 | 908 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014775 | sp|Q93WJ9|KAN1_ARATH | 40.122 | 491 | 173 | 17 | 1 | 458 | 1 | 403 | 1.06e-79 | 256 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014775 | tr|G7J8N8|G7J8N8_MEDTR | 97.425 | 466 | 3 | 5 | 1 | 461 | 1 | 462 | 0.0 | 908 |
Gene ID | Type | Classification |
---|---|---|
MsaG014775 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014775 | MtrunA17_Chr3g0109981 | 97.425 | 466 | 3 | 5 | 1 | 461 | 1 | 462 | 0.0 | 908 |
MsaG014775 | MtrunA17_Chr8g0366281 | 48.837 | 215 | 71 | 6 | 257 | 451 | 157 | 352 | 1.90e-52 | 180 |
MsaG014775 | MtrunA17_Chr6g0479431 | 35.666 | 443 | 194 | 16 | 18 | 451 | 7 | 367 | 6.78e-50 | 174 |
MsaG014775 | MtrunA17_Chr5g0410741 | 50.000 | 222 | 67 | 8 | 255 | 453 | 201 | 401 | 5.02e-48 | 170 |
MsaG014775 | MtrunA17_Chr1g0154261 | 47.179 | 195 | 74 | 5 | 267 | 461 | 120 | 285 | 1.44e-41 | 149 |
MsaG014775 | MtrunA17_Chr7g0243081 | 64.179 | 67 | 23 | 1 | 266 | 332 | 65 | 130 | 2.61e-21 | 95.1 |
MsaG014775 | MtrunA17_Chr1g0162931 | 65.517 | 58 | 20 | 0 | 272 | 329 | 17 | 74 | 1.72e-20 | 91.3 |
MsaG014775 | MtrunA17_Chr1g0210911 | 63.793 | 58 | 21 | 0 | 272 | 329 | 21 | 78 | 5.42e-20 | 90.9 |
MsaG014775 | MtrunA17_Chr2g0320231 | 68.966 | 58 | 18 | 0 | 272 | 329 | 96 | 153 | 1.86e-19 | 89.7 |
MsaG014775 | MtrunA17_Chr1g0190301 | 43.860 | 114 | 48 | 3 | 253 | 352 | 143 | 254 | 2.23e-19 | 89.7 |
MsaG014775 | MtrunA17_Chr8g0379121 | 67.241 | 58 | 19 | 0 | 272 | 329 | 110 | 167 | 6.14e-19 | 89.0 |
MsaG014775 | MtrunA17_Chr7g0258551 | 48.837 | 86 | 41 | 2 | 275 | 359 | 214 | 297 | 2.99e-18 | 86.3 |
MsaG014775 | MtrunA17_Chr7g0261911 | 50.000 | 86 | 43 | 0 | 274 | 359 | 263 | 348 | 4.30e-18 | 86.7 |
MsaG014775 | MtrunA17_Chr2g0288601 | 66.038 | 53 | 18 | 0 | 272 | 324 | 70 | 122 | 8.05e-17 | 76.6 |
MsaG014775 | MtrunA17_Chr3g0095611 | 58.929 | 56 | 23 | 0 | 274 | 329 | 20 | 75 | 1.12e-16 | 78.6 |
MsaG014775 | MtrunA17_Chr1g0175091 | 57.377 | 61 | 26 | 0 | 275 | 335 | 260 | 320 | 3.10e-16 | 80.5 |
MsaG014775 | MtrunA17_Chr5g0409731 | 67.925 | 53 | 17 | 0 | 274 | 326 | 26 | 78 | 3.11e-16 | 79.0 |
MsaG014775 | MtrunA17_Chr7g0274471 | 64.286 | 56 | 20 | 0 | 274 | 329 | 219 | 274 | 3.23e-16 | 80.5 |
MsaG014775 | MtrunA17_Chr2g0283951 | 58.462 | 65 | 23 | 1 | 272 | 332 | 88 | 152 | 8.90e-16 | 79.0 |
MsaG014775 | MtrunA17_Chr7g0254981 | 63.636 | 55 | 20 | 0 | 275 | 329 | 52 | 106 | 1.27e-15 | 77.0 |
MsaG014775 | MtrunA17_Chr1g0197171 | 54.930 | 71 | 31 | 1 | 274 | 344 | 45 | 114 | 1.37e-15 | 77.4 |
MsaG014775 | MtrunA17_Chr2g0290991 | 54.286 | 70 | 31 | 1 | 274 | 343 | 40 | 108 | 1.49e-15 | 77.4 |
MsaG014775 | MtrunA17_Chr8g0356501 | 51.429 | 70 | 34 | 0 | 274 | 343 | 38 | 107 | 2.14e-15 | 77.4 |
MsaG014775 | MtrunA17_Chr2g0291021 | 63.636 | 55 | 20 | 0 | 275 | 329 | 51 | 105 | 3.99e-15 | 76.3 |
MsaG014775 | MtrunA17_Chr2g0310011 | 51.429 | 70 | 34 | 0 | 274 | 343 | 36 | 105 | 4.00e-15 | 76.6 |
MsaG014775 | MtrunA17_Chr2g0321461 | 58.929 | 56 | 23 | 0 | 274 | 329 | 46 | 101 | 7.89e-15 | 75.9 |
MsaG014775 | MtrunA17_Chr6g0461641 | 54.237 | 59 | 27 | 0 | 274 | 332 | 43 | 101 | 3.84e-14 | 73.9 |
MsaG014775 | MtrunA17_Chr5g0417521 | 52.632 | 57 | 27 | 0 | 274 | 330 | 16 | 72 | 4.91e-14 | 73.2 |
MsaG014775 | MtrunA17_Chr4g0042451 | 54.386 | 57 | 26 | 0 | 274 | 330 | 18 | 74 | 1.38e-13 | 71.6 |
MsaG014775 | MtrunA17_Chr1g0175081 | 49.180 | 61 | 31 | 0 | 275 | 335 | 24 | 84 | 2.30e-13 | 66.2 |
MsaG014775 | MtrunA17_Chr1g0175071 | 37.615 | 109 | 52 | 3 | 275 | 367 | 179 | 287 | 8.41e-13 | 69.3 |
MsaG014775 | MtrunA17_Chr7g0242521 | 55.172 | 58 | 23 | 1 | 275 | 329 | 15 | 72 | 5.11e-12 | 65.9 |
MsaG014775 | MtrunA17_Chr4g0062921 | 48.529 | 68 | 35 | 0 | 272 | 339 | 234 | 301 | 1.26e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG014775 | AT5G16560.1 | 40.122 | 491 | 173 | 17 | 1 | 458 | 1 | 403 | 1.07e-80 | 256 |
MsaG014775 | AT1G32240.2 | 59.627 | 161 | 41 | 4 | 233 | 389 | 186 | 326 | 1.60e-49 | 173 |
MsaG014775 | AT1G32240.1 | 57.225 | 173 | 48 | 5 | 223 | 389 | 174 | 326 | 4.08e-49 | 172 |
MsaG014775 | AT4G17695.1 | 34.000 | 350 | 131 | 13 | 113 | 454 | 62 | 319 | 7.53e-40 | 146 |
MsaG014775 | AT5G42630.2 | 72.727 | 88 | 24 | 0 | 268 | 355 | 100 | 187 | 2.99e-36 | 133 |
MsaG014775 | AT5G42630.1 | 72.727 | 88 | 24 | 0 | 268 | 355 | 100 | 187 | 1.17e-35 | 133 |
MsaG014775 | AT2G38300.1 | 33.838 | 198 | 100 | 6 | 253 | 447 | 38 | 207 | 1.24e-21 | 96.3 |
MsaG014775 | AT2G40260.1 | 33.047 | 233 | 111 | 7 | 235 | 461 | 62 | 255 | 4.67e-20 | 92.4 |
MsaG014775 | AT4G04605.1 | 67.241 | 58 | 19 | 0 | 272 | 329 | 13 | 70 | 4.92e-20 | 89.0 |
MsaG014775 | AT2G02060.2 | 65.625 | 64 | 20 | 1 | 273 | 334 | 29 | 92 | 9.82e-20 | 89.0 |
MsaG014775 | AT2G02060.1 | 65.625 | 64 | 20 | 1 | 273 | 334 | 29 | 92 | 9.82e-20 | 89.0 |
MsaG014775 | AT1G14600.1 | 66.102 | 59 | 20 | 0 | 273 | 331 | 23 | 81 | 2.12e-19 | 88.2 |
MsaG014775 | AT4G04580.1 | 59.322 | 59 | 24 | 0 | 274 | 332 | 15 | 73 | 3.29e-18 | 82.4 |
MsaG014775 | AT2G42660.1 | 66.071 | 56 | 19 | 0 | 274 | 329 | 51 | 106 | 1.36e-17 | 82.8 |
MsaG014775 | AT4G04555.1 | 58.621 | 58 | 24 | 0 | 272 | 329 | 13 | 70 | 1.82e-17 | 78.2 |
MsaG014775 | AT5G45580.2 | 54.430 | 79 | 26 | 2 | 248 | 326 | 8 | 76 | 2.44e-17 | 82.4 |
MsaG014775 | AT5G45580.1 | 67.925 | 53 | 17 | 0 | 274 | 326 | 8 | 60 | 4.53e-17 | 81.3 |
MsaG014775 | AT4G28610.1 | 58.730 | 63 | 26 | 0 | 275 | 337 | 227 | 289 | 5.54e-16 | 80.1 |
MsaG014775 | AT2G01060.1 | 63.636 | 55 | 20 | 0 | 275 | 329 | 17 | 71 | 2.84e-15 | 76.6 |
MsaG014775 | AT3G12730.1 | 60.714 | 56 | 22 | 0 | 274 | 329 | 24 | 79 | 3.39e-15 | 75.5 |
MsaG014775 | AT1G32240.3 | 54.651 | 86 | 28 | 3 | 308 | 389 | 1 | 79 | 4.40e-15 | 72.8 |
MsaG014775 | AT3G04450.3 | 55.714 | 70 | 30 | 1 | 261 | 329 | 225 | 294 | 5.85e-15 | 75.9 |
MsaG014775 | AT5G29000.4 | 55.385 | 65 | 29 | 0 | 275 | 339 | 233 | 297 | 7.23e-15 | 75.9 |
MsaG014775 | AT4G13640.2 | 62.264 | 53 | 20 | 0 | 274 | 326 | 38 | 90 | 7.71e-15 | 75.5 |
MsaG014775 | AT4G13640.1 | 62.264 | 53 | 20 | 0 | 274 | 326 | 38 | 90 | 7.87e-15 | 75.5 |
MsaG014775 | AT1G79430.2 | 50.704 | 71 | 35 | 0 | 274 | 344 | 35 | 105 | 9.10e-15 | 75.9 |
MsaG014775 | AT5G29000.1 | 63.636 | 55 | 20 | 0 | 275 | 329 | 190 | 244 | 1.03e-14 | 75.9 |
MsaG014775 | AT5G29000.3 | 63.636 | 55 | 20 | 0 | 275 | 329 | 190 | 244 | 1.03e-14 | 75.9 |
MsaG014775 | AT3G04450.1 | 55.714 | 70 | 30 | 1 | 261 | 329 | 225 | 294 | 1.20e-14 | 76.3 |
MsaG014775 | AT3G04450.4 | 55.714 | 70 | 30 | 1 | 261 | 329 | 185 | 254 | 1.32e-14 | 75.9 |
MsaG014775 | AT3G04450.2 | 55.714 | 70 | 30 | 1 | 261 | 329 | 185 | 254 | 1.32e-14 | 75.9 |
MsaG014775 | AT3G24120.2 | 55.000 | 60 | 27 | 0 | 274 | 333 | 42 | 101 | 1.39e-14 | 74.7 |
MsaG014775 | AT3G24120.1 | 55.000 | 60 | 27 | 0 | 274 | 333 | 42 | 101 | 1.41e-14 | 74.7 |
MsaG014775 | AT5G29000.2 | 63.636 | 55 | 20 | 0 | 275 | 329 | 233 | 287 | 1.51e-14 | 75.9 |
MsaG014775 | AT5G18240.2 | 52.308 | 65 | 31 | 0 | 274 | 338 | 46 | 110 | 1.80e-14 | 75.5 |
MsaG014775 | AT5G18240.3 | 52.308 | 65 | 31 | 0 | 274 | 338 | 46 | 110 | 1.80e-14 | 75.5 |
MsaG014775 | AT5G06800.3 | 56.364 | 55 | 24 | 0 | 275 | 329 | 194 | 248 | 1.86e-14 | 73.9 |
MsaG014775 | AT5G18240.5 | 52.308 | 65 | 31 | 0 | 274 | 338 | 46 | 110 | 1.92e-14 | 75.5 |
MsaG014775 | AT5G18240.1 | 52.308 | 65 | 31 | 0 | 274 | 338 | 46 | 110 | 1.94e-14 | 75.5 |
MsaG014775 | AT5G18240.4 | 52.308 | 65 | 31 | 0 | 274 | 338 | 46 | 110 | 1.94e-14 | 75.5 |
MsaG014775 | AT3G04030.1 | 49.231 | 65 | 33 | 0 | 274 | 338 | 46 | 110 | 3.88e-14 | 74.3 |
MsaG014775 | AT5G06800.1 | 40.698 | 86 | 48 | 2 | 275 | 359 | 194 | 277 | 3.97e-14 | 74.3 |
MsaG014775 | AT5G06800.2 | 37.079 | 89 | 52 | 1 | 275 | 359 | 194 | 282 | 4.40e-14 | 73.9 |
MsaG014775 | AT3G04030.3 | 49.231 | 65 | 33 | 0 | 274 | 338 | 46 | 110 | 4.47e-14 | 74.3 |
MsaG014775 | AT2G20400.1 | 57.812 | 64 | 27 | 0 | 275 | 338 | 233 | 296 | 5.40e-14 | 73.9 |
MsaG014775 | AT2G20400.2 | 57.143 | 63 | 27 | 0 | 275 | 337 | 233 | 295 | 9.24e-14 | 73.2 |
MsaG014775 | AT3G13040.3 | 61.818 | 55 | 21 | 0 | 275 | 329 | 243 | 297 | 2.52e-13 | 72.0 |
MsaG014775 | AT3G13040.1 | 61.818 | 55 | 21 | 0 | 275 | 329 | 243 | 297 | 2.52e-13 | 72.0 |
MsaG014775 | AT3G13040.2 | 61.818 | 55 | 21 | 0 | 275 | 329 | 243 | 297 | 2.52e-13 | 72.0 |
MsaG014775 | AT2G06020.1 | 47.436 | 78 | 40 | 1 | 249 | 326 | 63 | 139 | 2.92e-13 | 70.9 |
MsaG014775 | AT1G69580.1 | 50.877 | 57 | 28 | 0 | 274 | 330 | 35 | 91 | 3.13e-12 | 68.2 |
MsaG014775 | AT2G03500.1 | 45.652 | 92 | 44 | 2 | 267 | 358 | 227 | 312 | 3.22e-12 | 68.6 |
MsaG014775 | AT1G69580.2 | 50.877 | 57 | 28 | 0 | 274 | 330 | 35 | 91 | 3.42e-12 | 67.8 |
MsaG014775 | AT3G04030.2 | 47.692 | 65 | 33 | 1 | 274 | 338 | 46 | 109 | 1.05e-11 | 67.0 |
MsaG014775 | AT1G68670.1 | 43.678 | 87 | 47 | 1 | 272 | 358 | 214 | 298 | 2.16e-11 | 65.5 |
MsaG014775 | AT5G58080.1 | 37.405 | 131 | 68 | 6 | 272 | 390 | 193 | 321 | 4.63e-11 | 65.5 |
Find 93 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTTCCATGGCTGGTAAAA+AGG | 0.206571 | 3:-78332827 | None:intergenic |
GTACTTGTCCATCGCATTCT+TGG | 0.279145 | 3:-78333180 | None:intergenic |
AGAATTATGAGGTTCATAAT+TGG | 0.296903 | 3:-78332482 | None:intergenic |
CACATGAATCACATAAATTA+TGG | 0.301972 | 3:+78332718 | MsaT014775.1:CDS |
GTTCATGCCGTTGAGCTTCT+TGG | 0.305023 | 3:+78333219 | MsaT014775.1:CDS |
CATCATCATCACTCACACTA+TGG | 0.323012 | 3:+78333072 | MsaT014775.1:CDS |
GAAGGAGACGGAGTTGAATT+AGG | 0.345696 | 3:-78332892 | None:intergenic |
CCACCATTGCTTCCAATTTG+TGG | 0.346594 | 3:-78334540 | None:intergenic |
GGTGTTGTTGATGTTGAAAT+TGG | 0.348173 | 3:-78332388 | None:intergenic |
ACTCATCCACCAACACTCTA+TGG | 0.365181 | 3:+78334625 | MsaT014775.1:CDS |
ATTTGATGTCCTCCTGATAT+TGG | 0.366341 | 3:-78336807 | None:intergenic |
GACAAACCTGCAGCTTCTTC+AGG | 0.367603 | 3:+78334134 | MsaT014775.1:CDS |
GAGGATGATGTGCCACAAAT+TGG | 0.387455 | 3:+78334528 | MsaT014775.1:CDS |
TGGTGATATAAACACATCTT+TGG | 0.387535 | 3:-78332865 | None:intergenic |
CCAAGCTTGGAGTTCACATT+AGG | 0.389593 | 3:+78337102 | MsaT014775.1:CDS |
TGTCCTTTGCCATTCCAATC+TGG | 0.391114 | 3:-78337129 | None:intergenic |
TAATCCATATCTTGCTGTAT+TGG | 0.398561 | 3:-78334603 | None:intergenic |
TTTGGACTTGTTTGTGGCCA+TGG | 0.402795 | 3:-78336744 | None:intergenic |
TTCCAATCACAACCAATATC+AGG | 0.403005 | 3:+78336795 | MsaT014775.1:CDS |
ATCAGGAGGACATCAAATTC+AGG | 0.406345 | 3:+78336812 | MsaT014775.1:CDS |
TCTCTTGAATGTTCCATGGC+TGG | 0.423245 | 3:-78332835 | None:intergenic |
CTCCTGATATTGGTTGTGAT+TGG | 0.426736 | 3:-78336797 | None:intergenic |
TAATTCTTCAAGAACAACTT+TGG | 0.432310 | 3:+78332498 | MsaT014775.1:CDS |
TAGACTGGAATCCCTTTGAT+TGG | 0.435250 | 3:-78332787 | None:intergenic |
TAGACCAATACAGCAAGATA+TGG | 0.437170 | 3:+78334599 | MsaT014775.1:CDS |
ATCAGTTCCAATACTGACTT+TGG | 0.438924 | 3:-78333582 | None:intergenic |
CTCTATGGAGTAATTCTTCA+AGG | 0.442637 | 3:+78334640 | MsaT014775.1:CDS |
CTGAAACCATCTATGTCGTT+TGG | 0.446505 | 3:-78336762 | None:intergenic |
TTAGGCCTTTCAGATGGATC+TGG | 0.451188 | 3:+78334504 | MsaT014775.1:intron |
TCACATTAGGCATACCAGAT+TGG | 0.452124 | 3:+78337115 | MsaT014775.1:CDS |
GTTATTAAACCTTGTGGCTA+CGG | 0.456769 | 3:-78333010 | None:intergenic |
ACAAGTCCAAACGACATAGA+TGG | 0.458406 | 3:+78336756 | MsaT014775.1:CDS |
ATGTCGTTTGGACTTGTTTG+TGG | 0.463624 | 3:-78336750 | None:intergenic |
CACTCACACTATGGGAGTGT+TGG | 0.469128 | 3:+78333081 | MsaT014775.1:CDS |
CAGCTCAAGAACAATTTGTC+AGG | 0.473778 | 3:+78337057 | MsaT014775.1:CDS |
GCTCACACTGAACTATCTCT+TGG | 0.484804 | 3:+78332532 | MsaT014775.1:CDS |
CCTAATGTGAACTCCAAGCT+TGG | 0.485539 | 3:-78337102 | None:intergenic |
GGTTGTGATTGGAAGATAGT+TGG | 0.486453 | 3:-78336786 | None:intergenic |
AGAGGTGAAGATGACGAAGA+AGG | 0.493765 | 3:-78332910 | None:intergenic |
ATACAATACATACCTGCAAA+TGG | 0.497480 | 3:-78333641 | None:intergenic |
TCTATAAGCCGCAGAGCCAC+TGG | 0.501461 | 3:-78332983 | None:intergenic |
GTTGTTCTTGAAGAATTATG+AGG | 0.504302 | 3:-78332493 | None:intergenic |
CTAATGTGAACTCCAAGCTT+GGG | 0.507483 | 3:-78337101 | None:intergenic |
AAAGAAGAATTAGAAGTACT+TGG | 0.514145 | 3:-78332439 | None:intergenic |
AAAGTCAGTATTGGAACTGA+TGG | 0.515750 | 3:+78333584 | MsaT014775.1:CDS |
TTCAATGAAAATCCCTTCCA+AGG | 0.520306 | 3:-78332365 | None:intergenic |
AGCAACACCAAAGTCAGTAT+TGG | 0.520531 | 3:+78333575 | MsaT014775.1:CDS |
AAGCATCCATGATGAGATCA+AGG | 0.522822 | 3:+78333118 | MsaT014775.1:CDS |
CTAAAGAAGATGCCCTTGGA+AGG | 0.522865 | 3:+78332352 | None:intergenic |
CACTATGGGAGTGTTGGACT+TGG | 0.532107 | 3:+78333087 | MsaT014775.1:CDS |
AGTGAGGAAAATGAGCTTGT+TGG | 0.536485 | 3:-78332630 | None:intergenic |
ATTACTCCATAGAGTGTTGG+TGG | 0.540356 | 3:-78334631 | None:intergenic |
GGTTGTTGTTGATGTTGTTG+TGG | 0.543246 | 3:-78332586 | None:intergenic |
GAAGAATTAGAAGTACTTGG+AGG | 0.543694 | 3:-78332436 | None:intergenic |
AATGAACGGTTATGATAGAC+TGG | 0.547430 | 3:-78332802 | None:intergenic |
ATCATCATCACTCACACTAT+GGG | 0.548466 | 3:+78333073 | MsaT014775.1:CDS |
AAGGGTTAAGACCAATCAAA+GGG | 0.548805 | 3:+78332776 | MsaT014775.1:CDS |
AGAGTGTAAGAACCCAAGCT+TGG | 0.553018 | 3:+78337089 | MsaT014775.1:CDS |
TGATGATGATGGTGGTGCAA+TGG | 0.555394 | 3:-78333057 | None:intergenic |
TTATGAGGTTCATAATTGGA+TGG | 0.559155 | 3:-78332478 | None:intergenic |
GAAGGGTTAAGACCAATCAA+AGG | 0.563565 | 3:+78332775 | MsaT014775.1:CDS |
GTTGGATTAGGCCTTTCAGA+TGG | 0.563620 | 3:+78334498 | MsaT014775.1:intron |
TAAAGAAGATGCCCTTGGAA+GGG | 0.566491 | 3:+78332353 | None:intergenic |
CCACAAATTGGAAGCAATGG+TGG | 0.568581 | 3:+78334540 | MsaT014775.1:CDS |
GAATTACCTGAAGAAGCTGC+AGG | 0.569581 | 3:-78334140 | None:intergenic |
AGGTTCGTTATTAAACCTTG+TGG | 0.572358 | 3:-78333016 | None:intergenic |
GTGTCATCAACATCATCAGA+AGG | 0.572682 | 3:+78332757 | MsaT014775.1:CDS |
GGATATTGATGAGATTTGAA+AGG | 0.577391 | 3:-78333036 | None:intergenic |
CATGCCGTTGAGCTTCTTGG+TGG | 0.577864 | 3:+78333222 | MsaT014775.1:CDS |
CGGCATGAACAAATCTAGCA+TGG | 0.592401 | 3:-78333206 | None:intergenic |
AGAATTACTCCATAGAGTGT+TGG | 0.593216 | 3:-78334634 | None:intergenic |
CTTATGTGAAGAGAAAGATC+AGG | 0.593684 | 3:-78332412 | None:intergenic |
GTGCCACAAATTGGAAGCAA+TGG | 0.595960 | 3:+78334537 | MsaT014775.1:CDS |
GAAGATGACGAAGAAGGAGA+CGG | 0.598612 | 3:-78332904 | None:intergenic |
ATTAAACCTTGTGGCTACGG+CGG | 0.603335 | 3:-78333007 | None:intergenic |
ATACCAGATTGGAATGGCAA+AGG | 0.624282 | 3:+78337126 | MsaT014775.1:CDS |
TGAGAGCACCAAGAATGCGA+TGG | 0.625062 | 3:+78333172 | MsaT014775.1:CDS |
CCTCTCCAGATCCATCTGAA+AGG | 0.630610 | 3:-78334509 | None:intergenic |
TTGTTGTGATGTTGAAAGTG+AGG | 0.638425 | 3:-78332646 | None:intergenic |
TCAATGAAAATCCCTTCCAA+GGG | 0.641425 | 3:-78332364 | None:intergenic |
ATGGCCACCAAGAAGCTCAA+CGG | 0.643310 | 3:-78333226 | None:intergenic |
TGTCATCAACATCATCAGAA+GGG | 0.646503 | 3:+78332758 | MsaT014775.1:CDS |
ATTGGAACTGATGGATGTGA+AGG | 0.646666 | 3:+78333593 | MsaT014775.1:CDS |
TTTAAACTCCAGTGGCTCTG+CGG | 0.648557 | 3:+78332975 | MsaT014775.1:CDS |
CCTTTCAGATGGATCTGGAG+AGG | 0.652978 | 3:+78334509 | MsaT014775.1:CDS |
TTAGGCATACCAGATTGGAA+TGG | 0.661276 | 3:+78337120 | MsaT014775.1:CDS |
ATAGAGCCGCCGTAGCCACA+AGG | 0.664238 | 3:+78333001 | MsaT014775.1:CDS |
ATGTGAAGAGAAAGATCAGG+TGG | 0.665926 | 3:-78332409 | None:intergenic |
GTGAGTGATGATGATGATGG+TGG | 0.675410 | 3:-78333065 | None:intergenic |
ACGGAGTTGAATTAGGCATG+TGG | 0.690652 | 3:-78332885 | None:intergenic |
CAATCACAACCAATATCAGG+AGG | 0.694629 | 3:+78336798 | MsaT014775.1:CDS |
AGTGTGAGTGATGATGATGA+TGG | 0.709391 | 3:-78333068 | None:intergenic |
TGATCAGTAGTAGAGAACCA+TGG | 0.715843 | 3:+78336727 | MsaT014775.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 78332361 | 78337158 | 78332361 | ID=MsaG014775 |
Chr3 | mRNA | 78332361 | 78337158 | 78332361 | ID=MsaT014775.1;Parent=MsaG014775 |
Chr3 | exon | 78332361 | 78333252 | 78332361 | ID=MsaT014775.1.exon1;Parent=MsaT014775.1 |
Chr3 | CDS | 78332361 | 78333252 | 78332361 | ID=cds.MsaT014775.1;Parent=MsaT014775.1 |
Chr3 | exon | 78333574 | 78333650 | 78333574 | ID=MsaT014775.1.exon2;Parent=MsaT014775.1 |
Chr3 | CDS | 78333574 | 78333650 | 78333574 | ID=cds.MsaT014775.1;Parent=MsaT014775.1 |
Chr3 | exon | 78334110 | 78334155 | 78334110 | ID=MsaT014775.1.exon3;Parent=MsaT014775.1 |
Chr3 | CDS | 78334110 | 78334155 | 78334110 | ID=cds.MsaT014775.1;Parent=MsaT014775.1 |
Chr3 | exon | 78334508 | 78334661 | 78334508 | ID=MsaT014775.1.exon4;Parent=MsaT014775.1 |
Chr3 | CDS | 78334508 | 78334661 | 78334508 | ID=cds.MsaT014775.1;Parent=MsaT014775.1 |
Chr3 | exon | 78336734 | 78336833 | 78336734 | ID=MsaT014775.1.exon5;Parent=MsaT014775.1 |
Chr3 | CDS | 78336734 | 78336833 | 78336734 | ID=cds.MsaT014775.1;Parent=MsaT014775.1 |
Chr3 | exon | 78337042 | 78337158 | 78337042 | ID=MsaT014775.1.exon6;Parent=MsaT014775.1 |
Chr3 | CDS | 78337042 | 78337158 | 78337042 | ID=cds.MsaT014775.1;Parent=MsaT014775.1 |
Gene Sequence |
Protein sequence |