AlfalfaGEDB | MsaG014786

M. sativa ssp. caerulea / MsaG014786

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014786	XP_039687320.1	96.694	242	5	1	1	239	1	242	7.46e-171	480

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014786	sp\|Q9FJK3\|AGL80_ARATH	56.164	219	83	3	1	206	1	219	2.24e-69	218

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014786	tr\|G7J8R0\|G7J8R0_MEDTR	96.694	242	5	1	1	239	1	242	3.56e-171	480

TFs/TRs:

Gene ID	Type	Classification
MsaG014786	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014786	MtrunA17_Chr3g0110131	96.694	242	5	1	1	239	1	242	6.86e-175	480
MsaG014786	MtrunA17_Chr3g0107381	54.357	241	83	4	1	234	1	221	5.60e-83	247
MsaG014786	MtrunA17_Chr8g0351751	56.735	245	95	6	1	235	1	244	1.03e-79	239
MsaG014786	MtrunA17_Chr4g0014321	50.847	236	107	4	1	235	1	228	5.25e-77	232
MsaG014786	MtrunA17_Chr4g0014031	49.794	243	97	6	1	235	1	226	1.74e-65	202
MsaG014786	MtrunA17_Chr4g0013041	61.039	154	57	2	1	153	1	152	3.65e-61	191
MsaG014786	MtrunA17_Chr4g0014131	50.206	243	98	6	1	235	1	228	2.38e-59	187
MsaG014786	MtrunA17_Chr3g0107331	51.899	158	76	0	3	160	2	159	4.43e-55	174
MsaG014786	MtrunA17_Chr4g0014121	61.290	155	59	1	1	154	29	183	7.39e-54	171
MsaG014786	MtrunA17_Chr2g0296831	68.033	122	39	0	1	122	1	122	4.53e-52	164
MsaG014786	MtrunA17_Chr3g0107351	49.682	157	79	0	3	159	2	158	7.88e-51	163
MsaG014786	MtrunA17_Chr3g0107341	49.682	157	79	0	3	159	2	158	3.49e-49	159
MsaG014786	MtrunA17_Chr3g0107361	49.682	157	79	0	3	159	2	158	5.94e-49	158
MsaG014786	MtrunA17_Chr3g0107461	49.032	155	78	1	1	154	1	155	9.47e-49	157
MsaG014786	MtrunA17_Chr5g0420351	50.000	156	77	1	1	156	1	155	1.23e-46	152
MsaG014786	MtrunA17_Chr5g0432691	42.593	162	93	0	1	162	1	162	4.73e-46	150
MsaG014786	MtrunA17_Chr2g0283941	41.294	201	106	3	1	197	1	193	1.38e-42	144
MsaG014786	MtrunA17_Chr1g0188681	46.497	157	83	1	1	157	1	156	4.82e-42	140
MsaG014786	MtrunA17_Chr7g0218151	50.955	157	76	1	1	157	1	156	1.72e-41	139
MsaG014786	MtrunA17_Chr1g0197261	42.949	156	88	1	1	156	1	155	6.08e-41	137
MsaG014786	MtrunA17_Chr1g0193311	50.000	156	77	1	1	156	1	155	4.54e-40	135
MsaG014786	MtrunA17_Chr1g0188661	50.318	157	77	1	1	157	1	156	6.36e-40	135
MsaG014786	MtrunA17_Chr4g0031421	48.529	136	69	1	29	163	1	136	7.72e-39	132
MsaG014786	MtrunA17_Chr4g0012761	48.408	157	80	1	1	157	1	156	5.44e-38	130
MsaG014786	MtrunA17_Chr1g0197321	40.127	157	92	2	1	156	1	156	5.75e-37	127
MsaG014786	MtrunA17_Chr1g0197461	42.384	151	86	1	3	153	2	151	8.23e-37	127
MsaG014786	MtrunA17_Chr3g0105791	46.923	130	68	1	29	157	1	130	3.06e-36	125
MsaG014786	MtrunA17_Chr2g0296861	43.506	154	87	0	1	154	1	154	7.29e-36	124
MsaG014786	MtrunA17_Chr1g0188651	48.408	157	78	2	1	157	1	154	1.06e-34	121
MsaG014786	MtrunA17_Chr3g0106421	37.748	151	89	2	29	178	1	147	8.37e-31	113
MsaG014786	MtrunA17_Chr3g0106501	38.060	134	82	1	29	161	1	134	2.90e-27	102
MsaG014786	MtrunA17_Chr6g0457851	29.630	243	133	9	1	233	11	225	2.59e-24	99.4
MsaG014786	MtrunA17_Chr4g0008701	38.462	117	72	0	3	119	6	122	7.83e-24	99.4
MsaG014786	MtrunA17_Chr7g0267601	38.525	122	72	1	1	119	1	122	2.83e-23	97.8
MsaG014786	MtrunA17_Chr1g0212151	26.639	244	141	8	1	234	1	216	2.74e-20	88.2
MsaG014786	MtrunA17_Chr3g0128721	27.564	156	113	0	3	158	6	161	3.42e-20	89.0
MsaG014786	MtrunA17_Chr6g0449861	26.749	243	142	9	1	234	9	224	6.71e-20	87.0
MsaG014786	MtrunA17_Chr2g0296851	50.562	89	43	1	74	161	1	89	1.77e-19	80.5
MsaG014786	MtrunA17_Chr6g0449851	26.087	184	120	5	1	178	1	174	8.78e-16	75.1
MsaG014786	MtrunA17_Chr4g0022641	24.623	199	132	5	1	189	1	191	2.15e-12	65.9
MsaG014786	MtrunA17_Chr4g0059631	26.627	169	113	4	1	166	1	161	1.04e-11	62.8
MsaG014786	MtrunA17_Chr1g0212471	26.250	160	107	3	1	156	1	153	2.32e-11	60.8
MsaG014786	MtrunA17_Chr2g0317481	27.615	239	147	10	3	226	10	237	8.98e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014786	AT5G48670.1	56.164	219	83	3	1	206	1	219	2.28e-70	218
MsaG014786	AT1G65300.1	43.678	174	98	0	3	176	2	175	1.07e-50	167
MsaG014786	AT1G65330.1	47.778	180	92	1	3	180	2	181	1.50e-50	166
MsaG014786	AT3G05860.3	44.505	182	96	2	1	177	1	182	4.14e-48	159
MsaG014786	AT5G26630.1	47.120	191	99	1	1	191	1	189	4.23e-48	158
MsaG014786	AT3G05860.2	51.007	149	73	0	1	149	1	149	4.47e-48	157
MsaG014786	AT3G05860.1	41.709	199	111	2	1	194	1	199	8.56e-48	159
MsaG014786	AT5G26650.1	44.654	159	88	0	4	162	2	160	1.41e-43	150
MsaG014786	AT5G27960.1	44.025	159	89	0	4	162	2	160	1.26e-42	147
MsaG014786	AT1G31630.1	42.405	158	90	1	3	160	2	158	1.10e-41	145
MsaG014786	AT5G27810.1	66.667	93	31	0	29	121	1	93	5.75e-40	134
MsaG014786	AT1G31640.1	41.875	160	92	1	3	162	2	160	6.29e-39	140
MsaG014786	AT2G28700.1	35.714	182	108	4	1	176	1	179	6.45e-34	124
MsaG014786	AT5G26580.1	39.375	160	83	1	1	160	1	146	4.85e-32	120
MsaG014786	AT1G22590.2	35.714	154	96	1	1	154	1	151	2.22e-26	100
MsaG014786	AT2G40210.1	43.902	123	69	0	1	123	1	123	6.14e-24	99.0
MsaG014786	AT5G06500.1	37.815	119	74	0	1	119	1	119	1.37e-21	90.1
MsaG014786	AT5G55690.1	28.365	208	113	4	1	187	1	193	1.63e-17	79.7
MsaG014786	AT5G55690.2	28.365	208	113	4	1	187	1	193	1.63e-17	79.7
MsaG014786	AT5G58890.1	30.625	160	96	3	1	154	1	151	1.45e-13	68.9
MsaG014786	AT1G77950.3	37.895	95	58	1	1	95	1	94	5.26e-11	61.2
MsaG014786	AT1G77950.2	37.895	95	58	1	1	95	1	94	5.26e-11	61.2
MsaG014786	AT1G77950.1	37.895	95	58	1	1	95	1	94	5.26e-11	61.2
MsaG014786	AT1G77950.4	37.895	95	58	1	1	95	1	94	5.26e-11	61.2
MsaG014786	AT5G35120.1	32.967	91	61	0	84	174	1	91	6.82e-11	58.2

Find 55 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTCCATTCTCTTCAATCTT+AGG	0.228194	3:+78491826	None:intergenic
TCTATTATCCTTTCTTTGTT+TGG	0.241148	3:+78492059	None:intergenic
GATTTGGCCAAAACCCATTT+GGG	0.290435	3:+78491680	None:intergenic
TTTATGAACTTGATGAATAA+TGG	0.322309	3:-78491742	MsaT014786.1:CDS
ATGCTTATATTGTGCATAAC+TGG	0.326699	3:+78491991	None:intergenic
GAAGAAAGGTCTAATGAAAA+AGG	0.328619	3:-78492292	MsaT014786.1:CDS
CATGGTTGATTTGAATGATA+TGG	0.333296	3:-78491971	MsaT014786.1:CDS
GAGTCATGGTCAACATGTTT+TGG	0.338044	3:-78491800	MsaT014786.1:CDS
GGATTTGGCCAAAACCCATT+TGG	0.342692	3:+78491679	None:intergenic
ACCTCTGGTTGAGGATCATA+TGG	0.368481	3:+78492216	None:intergenic
GAGGTTTGGCCGTCTCCTTT+AGG	0.389676	3:-78492198	MsaT014786.1:CDS
TGGGGATCAGGCACCTCCTA+TGG	0.395072	3:-78491716	MsaT014786.1:CDS
GAATAATGGTGGTGGGGATC+AGG	0.411629	3:-78491728	MsaT014786.1:CDS
AATGGTCGTAGCACCAACTA+TGG	0.416139	3:-78491863	MsaT014786.1:CDS
AGTATTTGAAAGATATCAAT+AGG	0.431729	3:-78491933	MsaT014786.1:CDS
ATGATCCTCAACCAGAGGTT+TGG	0.448024	3:-78492212	MsaT014786.1:CDS
GCACCAACTATGGTGGCTAA+TGG	0.475430	3:-78491853	MsaT014786.1:CDS
AAAGGAGACGGCCAAACCTC+TGG	0.476094	3:+78492201	None:intergenic
GTCTCCTTTAGGAGTTCAAA+GGG	0.477655	3:-78492187	MsaT014786.1:CDS
CGTCTCCTTTAGGAGTTCAA+AGG	0.479690	3:-78492188	MsaT014786.1:CDS
GGAAGGCAACATTCAAGAAA+AGG	0.489208	3:-78492314	MsaT014786.1:CDS
TCAATTGACCAAACAAAGAA+AGG	0.490968	3:-78492067	MsaT014786.1:CDS
TTTGAGGCAGCGGATTCAAA+AGG	0.492900	3:-78492097	MsaT014786.1:CDS
GGAGGGTTGAAATGTTGAGC+AGG	0.493102	3:-78491912	MsaT014786.1:CDS
AGGTCAAGGTCAAACTCAAA+TGG	0.513312	3:-78491881	MsaT014786.1:CDS
AGCACCCTTTGAACTCCTAA+AGG	0.514637	3:+78492183	None:intergenic
GTTGAAATGTTGAGCAGGAA+TGG	0.522645	3:-78491907	MsaT014786.1:CDS
GTACCTAAGATTGAAGAGAA+TGG	0.524167	3:-78491829	MsaT014786.1:CDS
GGGGATCAGGCACCTCCTAT+GGG	0.527561	3:-78491715	MsaT014786.1:CDS
AATCAACGACTCTGCGAGGA+AGG	0.536639	3:-78492331	MsaT014786.1:CDS
ACTCCATTAGCCACCATAGT+TGG	0.543974	3:+78491850	None:intergenic
TTTGAAAGATATCAATAGGA+GGG	0.549226	3:-78491929	MsaT014786.1:CDS
AACTTGATGAATAATGGTGG+TGG	0.552012	3:-78491736	MsaT014786.1:CDS
AGCAGGAATGGTCAAGGTCA+AGG	0.553703	3:-78491895	MsaT014786.1:CDS
GAGAATGGACAAGGGAGTCA+TGG	0.556512	3:-78491814	MsaT014786.1:CDS
ACATTCAAGAAAAGGAAGAA+AGG	0.560908	3:-78492306	MsaT014786.1:CDS
GACGGCCAAACCTCTGGTTG+AGG	0.565198	3:+78492207	None:intergenic
GGATTGACATTTCCCATAGG+AGG	0.571905	3:+78491703	None:intergenic
ATTTGGCCAAAACCCATTTG+GGG	0.587386	3:+78491681	None:intergenic
TTTGGCCAAAACCCATTTGG+GGG	0.595235	3:+78491682	None:intergenic
ATTTGAAAGATATCAATAGG+AGG	0.602830	3:-78491930	MsaT014786.1:CDS
GCATAACTGGATCAGCACTA+AGG	0.605501	3:+78492004	None:intergenic
AAGATTGAAGAGAATGGACA+AGG	0.608283	3:-78491823	MsaT014786.1:CDS
ACTTGATGAATAATGGTGGT+GGG	0.616834	3:-78491735	MsaT014786.1:CDS
ATGAACTTGATGAATAATGG+TGG	0.624781	3:-78491739	MsaT014786.1:CDS
AGTGAACTCAGTACTCTATG+TGG	0.630043	3:-78492267	MsaT014786.1:CDS
CTTGATGAATAATGGTGGTG+GGG	0.636670	3:-78491734	MsaT014786.1:CDS
CTTTGAACTCCTAAAGGAGA+CGG	0.641014	3:+78492189	None:intergenic
AGTTATGCACAATATAAGCA+TGG	0.643634	3:-78491989	MsaT014786.1:CDS
TTGATTTGAATGATATGGCA+TGG	0.644556	3:-78491966	MsaT014786.1:CDS
ATGTTGAGCAGGAATGGTCA+AGG	0.649347	3:-78491901	MsaT014786.1:CDS
GGTCGTAGCACCAACTATGG+TGG	0.652064	3:-78491860	MsaT014786.1:CDS
TCCATATGATCCTCAACCAG+AGG	0.660033	3:-78492217	MsaT014786.1:CDS
TCATAATCAACGACTCTGCG+AGG	0.671801	3:-78492335	MsaT014786.1:CDS
AGATTGAAGAGAATGGACAA+GGG	0.691703	3:-78491822	MsaT014786.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	78491666	78492385	78491666	ID=MsaG014786
Chr3	mRNA	78491666	78492385	78491666	ID=MsaT014786.1;Parent=MsaG014786
Chr3	exon	78491666	78492385	78491666	ID=MsaT014786.1.exon1;Parent=MsaT014786.1
Chr3	CDS	78491666	78492385	78491666	ID=cds.MsaT014786.1;Parent=MsaT014786.1

Gene Sequence

>MsaT014786.1

ATGACTAGAAAAAAGGTGAAACTCGCATTCATAATCAACGACTCTGCGAGGAAGGCAACATTCAAGAAAAGGAAGAAAGGTCTAATGAAAAAGGTTAGTGAACTCAGTACTCTATGTGGAATTGATGCTTGTGCTATAATCTATAGTCCATATGATCCTCAACCAGAGGTTTGGCCGTCTCCTTTAGGAGTTCAAAGGGTGCTTTCTAAGTTCCGAAAAATGCCTGAATTGGAACAAAGCAAAAAGATGGTGAACCAAGAGAGTTTTTTGAGGCAGCGGATTCAAAAGGCGAAAGATCAATTGACCAAACAAAGAAAGGATAATAGAGAAAAAGAAATGACTCAGTTAATGTTTCAGTACCTTAGTGCTGATCCAGTTATGCACAATATAAGCATGGTTGATTTGAATGATATGGCATGGTTGATTGATCAGTATTTGAAAGATATCAATAGGAGGGTTGAAATGTTGAGCAGGAATGGTCAAGGTCAAGGTCAAACTCAAATGGTCGTAGCACCAACTATGGTGGCTAATGGAGTACCTAAGATTGAAGAGAATGGACAAGGGAGTCATGGTCAACATGTTTTGGACATGAACATGGATGTTATGCAAAAGCAACATTTTTTTATGAACTTGATGAATAATGGTGGTGGGGATCAGGCACCTCCTATGGGAAATGTCAATCCCCCAAATGGGTTTTGGCCAAATCCATTTTTTCGTTGA

Protein sequence

>MsaT014786.1

MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSPLGVQRVLSKFRKMPELEQSKKMVNQESFLRQRIQKAKDQLTKQRKDNREKEMTQLMFQYLSADPVMHNISMVDLNDMAWLIDQYLKDINRRVEMLSRNGQGQGQTQMVVAPTMVANGVPKIEENGQGSHGQHVLDMNMDVMQKQHFFMNLMNNGGGDQAPPMGNVNPPNGFWPNPFFR*