AlfalfaGEDB | MsaG014834

M. sativa ssp. caerulea / MsaG014834

KEGG: K14494
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0035690 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
PFAM: PF12041.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014834	XP_013460591.3	97.636	550	8	3	1	548	48	594	0.0	1107

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014834	sp\|A0A396IUP1\|DELA1_MEDTR	97.636	550	8	3	1	548	48	594	0.0	1107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014834	tr\|A0A2Z6NQX5\|A0A2Z6NQX5_TRISU	86.076	553	45	9	13	548	1	538	0.0	947

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TFs/TRs:

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Gene ID	Type	Classification
MsaG014834	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014834	MtrunA17_Chr3g0110971	97.636	550	8	3	1	548	48	594	0.0	1107
MsaG014834	MtrunA17_Chr8g0376381	62.569	545	150	11	7	542	24	523	0.0	664
MsaG014834	MtrunA17_Chr2g0306641	46.667	540	209	12	13	541	16	487	4.34e-159	463
MsaG014834	MtrunA17_Chr7g0224271	40.842	404	192	9	164	541	291	673	2.48e-91	294
MsaG014834	MtrunA17_Chr8g0357601	35.338	399	214	12	167	542	176	553	4.96e-75	248
MsaG014834	MtrunA17_Chr5g0447691	37.436	390	207	8	170	541	174	544	7.80e-74	244
MsaG014834	MtrunA17_Chr1g0159461	36.554	383	212	8	174	541	226	592	2.23e-69	234
MsaG014834	MtrunA17_Chr3g0125811	32.870	432	248	10	136	541	155	570	7.25e-67	226
MsaG014834	MtrunA17_Chr5g0445331	35.443	395	212	10	170	541	158	532	2.44e-66	224
MsaG014834	MtrunA17_Chr3g0101141	36.504	389	212	11	170	541	172	542	2.44e-66	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014834	AT2G01570.1	60.832	577	168	10	1	542	29	582	0.0	669
MsaG014834	AT3G03450.1	63.586	541	145	11	15	542	45	546	0.0	665
MsaG014834	AT1G14920.1	60.573	558	158	7	6	545	20	533	0.0	662
MsaG014834	AT1G66350.1	61.111	540	151	10	10	546	28	511	0.0	646
MsaG014834	AT5G17490.1	58.256	539	162	12	13	542	33	517	0.0	588
MsaG014834	AT5G48150.1	37.984	387	202	9	174	541	123	490	1.05e-74	245
MsaG014834	AT5G48150.4	37.984	387	202	9	174	541	123	490	1.05e-74	245
MsaG014834	AT5G48150.2	37.984	387	202	9	174	541	123	490	1.05e-74	245
MsaG014834	AT5G48150.3	37.984	387	202	9	174	541	123	490	1.05e-74	245
MsaG014834	AT3G54220.1	36.047	430	234	11	122	540	250	649	9.69e-69	234

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Find 142 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGAACTCGACCGGGT+TGG	0.526219	3:+79096993	MsaT014834.1:CDS
AAAGCTTGAACAGCTTGAGA+TGG	0.568021	3:+79095790	MsaT014834.1:CDS
AAATGAGCGAATTTGAGATA+AGG	0.566361	3:-79096427	None:intergenic
AACATGAACTCTTCCGGCAC+CGG	0.512483	3:-79096482	None:intergenic
AACCGGTATTGGACCGCCGC+AGG	0.530912	3:+79096594	MsaT014834.1:CDS
AACTCGAACTCGACCGGGTT+GGG	0.288531	3:+79096994	MsaT014834.1:CDS
AACTCTTCCGGCACCGGCGA+AGG	0.479429	3:-79096476	None:intergenic
AAGAACCCAAAGAAGCTAAA+GGG	0.524765	3:-79095946	None:intergenic
AAGTCTCATGTCTTTCAACC+CGG	0.637365	3:-79097098	None:intergenic
AATAATGGGTGTCTTATGTT+AGG	0.308660	3:+79097249	MsaT014834.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	79095689	79097335	79095689	ID=MsaG014834
Chr3	mRNA	79095689	79097335	79095689	ID=MsaT014834.1;Parent=MsaG014834
Chr3	exon	79095689	79097335	79095689	ID=MsaT014834.1.exon1;Parent=MsaT014834.1
Chr3	CDS	79095689	79097335	79095689	ID=cds.MsaT014834.1;Parent=MsaT014834.1

Gene Sequence

>MsaT014834.1

ATGTGGAGAGAAGAAAAAGAAACCAACGGTGGTGGAATGGACGAGTTGTTAGCAGCATTAGGTTACAAGGTTCGTTCTTCAGACATGGCTGATGTAGCTCAAAAGCTTGAACAGCTTGAGATGGTTATGGGTAGTGCTCAAGAAGAAGGTATCAACCATCTTTCTTCTGATACTGTTCACTATGACCCAACCGATCTATATTCATGGGTTCAAACCATGCTCACTGAACTCAACCCTGATTCTTCTCAAATCAATGACCCTTTAGCTTCTTTGGGTTCTTCTTCTTCTTCTTCAATCCTCAACAACACTTTTAATGATGATTCTGAGTATGATCTTAGCGCTATTCCTGGAATGGCTGCATACCCACCTCAAGAAGAAAACATAACAGCTAAGCGAATGAAGACTTGGTCTGAACCGGAACCGGCGGTGGCGATGTCACCACCACCGGCGGTGATGGAGAATACAAGACCGGTGGTTCTTGTTGATACACAAGAAACTGGTGTTCGTCTTGTTCATACTTTAATGGCTTGTGCAGAAGCGATTCAGCAAGAGAATCTGAAACTTGCAGAAGCGCTTGTGAAGCATATAAGCTTATTAGCTTCATTACAAACTGGTGCGATGAGAAAAGTTGCTTCCTATTTCGCACAAGCACTTGCTAGAAGAATCTACGGTAACCCAGAAGAAACAATCGATTCATCATTCTCAGAAATTCTTCACATGCATTTTTACGAATCTTCACCTTATCTCAAATTCGCTCATTTCACTGCTAATCAAGCTATTCTCGAAGCCTTCGCCGGTGCCGGAAGAGTTCATGTTATTGATTTTGGTCTTAAACAAGGGATGCAATGGCCAGCGCTTATGCAAGCGCTGGCATTACGCCCCGGCGGTCCTCCTACGTTCCGGTTAACCGGTATTGGACCGCCGCAGGCGGACAATACCGATGCTTTGCAACAAGTGGGCTGGAAATTAGCTCAGCTTGCTCAGACAATCGGTGTTCAGTTCGAATTTCGTGGATTTGTTTGTAACAGTATTGCGGATCTTGACCCGAATATGCTTGAGATCCGACCCGGTGAAGCTGTTGCTGTTAACTCTGTTTTTGAGCTTCATACTATGTTAGCCCGACCCGGTTCAGTTGAGAAAGTTCTCAACACTGTTAAGAAGATTAACCCTAAAATCGTAACAATCGTTGAACAAGAAGCGAATCATAACGGACCGGTTTTCGTAGACCGGTTTACTGAAGCTTTACATTATTACTCGAGTTTATTCGATTCGCTAGAGGGTTCGAATTCGGGTTTGAATAATTCAAACTCGAACTCGACCGGGTTGGGTTCACCGAGTCAGGATTTGTTGATGTCAGAGATTTATCTCGGGAGACAGATATGTAATGTGGTGGCTTATGAAGGAGTGGACCGGGTTGAAAGACATGAGACTTTGACTCAATGGCGGTCTAGGATGGGTTCAGCTGGGTTCGAACCGGTTCATTTGGGTTCAAATGCGTTTAAACAAGCTAGTACTTTGTTAGCTTTGTTTGCTGGTGGTGATGGTTATAGGGTTGAGGAAAATAATGGGTGTCTTATGTTAGGGTGGCATACAAGGTCACTCATTGCTACTTCTGCTTGGAAGCTTCCACAAAATGAGTCCAAGTGA

Protein sequence

>MsaT014834.1

MWREEKETNGGGMDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAQEEGINHLSSDTVHYDPTDLYSWVQTMLTELNPDSSQINDPLASLGSSSSSSILNNTFNDDSEYDLSAIPGMAAYPPQEENITAKRMKTWSEPEPAVAMSPPPAVMENTRPVVLVDTQETGVRLVHTLMACAEAIQQENLKLAEALVKHISLLASLQTGAMRKVASYFAQALARRIYGNPEETIDSSFSEILHMHFYESSPYLKFAHFTANQAILEAFAGAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQADNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSIADLDPNMLEIRPGEAVAVNSVFELHTMLARPGSVEKVLNTVKKINPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSNSGLNNSNSNSTGLGSPSQDLLMSEIYLGRQICNVVAYEGVDRVERHETLTQWRSRMGSAGFEPVHLGSNAFKQASTLLALFAGGDGYRVEENNGCLMLGWHTRSLIATSAWKLPQNESK*