AlfalfaGEDB | MsaG014897

M. sativa ssp. caerulea / MsaG014897

KEGG: K00924 K04733
GO: GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014897	XP_013460666.1	98.034	407	8	0	1	407	1	407	0.0	833

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014897	sp\|Q06548\|PBL9_ARATH	67.209	369	115	3	3	371	1	363	0.0	513

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014897	tr\|A0A072V936\|A0A072V936_MEDTR	98.034	407	8	0	1	407	1	407	0.0	833

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000164	MsaG014897	0.808729	4.573328e-50	7.574585e-48
MsaG001196	MsaG014897	0.810084	2.349660e-50	4.020723e-48
MsaG001336	MsaG014897	0.804997	2.789083e-49	4.228196e-47
MsaG001403	MsaG014897	0.810739	1.699293e-50	2.954650e-48
MsaG002354	MsaG014897	0.808036	6.420004e-50	1.045676e-47
MsaG002359	MsaG014897	0.811232	1.330317e-50	2.341171e-48
MsaG003188	MsaG014897	0.858605	1.436607e-62	1.059556e-59
MsaG003865	MsaG014897	0.817273	6.247141e-52	1.279793e-49
MsaG004603	MsaG014897	0.804496	3.545317e-49	5.312434e-47
MsaG005201	MsaG014897	0.824811	1.168832e-53	2.925025e-51

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014897	MtrunA17_Chr3g0111631	98.034	407	8	0	1	407	1	407	0.0	833
MsaG014897	MtrunA17_Chr5g0435211	72.900	369	99	1	3	370	1	369	0.0	579
MsaG014897	MtrunA17_Chr2g0328171	69.482	367	112	0	3	369	1	367	0.0	550
MsaG014897	MtrunA17_Chr7g0238671	65.414	399	129	3	3	400	1	391	0.0	529
MsaG014897	MtrunA17_Chr3g0111581	72.022	361	93	3	1	361	1	353	0.0	523
MsaG014897	MtrunA17_Chr2g0328211	60.278	360	128	3	3	361	1	346	1.57e-160	455
MsaG014897	MtrunA17_Chr4g0031541	59.504	363	139	4	3	362	9	366	7.55e-155	443
MsaG014897	MtrunA17_Chr5g0416311	57.576	363	145	3	45	405	45	400	2.97e-154	442
MsaG014897	MtrunA17_Chr4g0031571	57.641	373	143	3	3	362	9	379	3.50e-151	434
MsaG014897	MtrunA17_Chr4g0031561	59.299	371	138	3	3	362	9	377	1.85e-150	432

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014897	AT1G07570.1	67.209	369	115	3	3	371	1	363	0.0	513
MsaG014897	AT1G07570.5	67.209	369	115	3	3	371	1	363	0.0	513
MsaG014897	AT1G07570.2	67.209	369	115	3	3	371	1	363	0.0	513
MsaG014897	AT2G28930.3	67.308	364	117	1	3	366	1	362	2.39e-180	508
MsaG014897	AT2G28930.2	67.308	364	114	2	3	366	1	359	5.64e-179	505
MsaG014897	AT5G02290.2	63.788	359	124	2	3	361	1	353	1.47e-177	500
MsaG014897	AT5G02290.1	63.788	359	124	2	3	361	1	353	1.47e-177	500
MsaG014897	AT1G07570.3	69.006	342	105	1	30	371	34	374	1.28e-176	499
MsaG014897	AT2G39660.1	64.641	362	121	2	3	364	1	355	1.89e-176	498
MsaG014897	AT2G28930.1	65.479	365	112	1	2	366	20	370	2.74e-174	493

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 91 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCAGATTTCGGGA+TGG	0.696023	3:+79960678	MsaT014897.1:CDS
AAACCAGTACCTGGTTTAGT+AGG	0.499048	3:-79959858	None:intergenic
AAAGGTTGTCGGGAGAGAAG+AGG	0.643339	3:+79959623	MsaT014897.1:CDS
AACAGTGGTTCAAAACAGCA+TGG	0.644648	3:+79961569	MsaT014897.1:CDS
AACGTCGATGAATCTTTAAG+CGG	0.624665	3:+79961596	MsaT014897.1:CDS
AAGAGTGATGTATACAGTTT+TGG	0.244902	3:+79961248	MsaT014897.1:CDS
AATCAAGAGCTATCTTCATT+CGG	0.480254	3:-79960475	None:intergenic
AATCATGCTCTCCAGACGGT+CGG	0.653401	3:-79961319	None:intergenic
AATCCAATGATAAAACAAAT+GGG	0.528287	3:+79961534	MsaT014897.1:CDS
AATGCAAAACTCTCAGATTT+CGG	0.260591	3:+79960673	MsaT014897.1:CDS

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	79958695	79961670	79958695	ID=MsaG014897
Chr3	mRNA	79958695	79961670	79958695	ID=MsaT014897.1;Parent=MsaG014897
Chr3	exon	79958695	79958752	79958695	ID=MsaT014897.1.exon1;Parent=MsaT014897.1
Chr3	CDS	79958695	79958752	79958695	ID=cds.MsaT014897.1;Parent=MsaT014897.1
Chr3	exon	79959613	79959938	79959613	ID=MsaT014897.1.exon2;Parent=MsaT014897.1
Chr3	CDS	79959613	79959938	79959613	ID=cds.MsaT014897.1;Parent=MsaT014897.1
Chr3	exon	79960181	79960316	79960181	ID=MsaT014897.1.exon3;Parent=MsaT014897.1
Chr3	CDS	79960181	79960316	79960181	ID=cds.MsaT014897.1;Parent=MsaT014897.1
Chr3	exon	79960441	79960583	79960441	ID=MsaT014897.1.exon4;Parent=MsaT014897.1
Chr3	CDS	79960441	79960583	79960441	ID=cds.MsaT014897.1;Parent=MsaT014897.1
Chr3	exon	79960667	79960790	79960667	ID=MsaT014897.1.exon5;Parent=MsaT014897.1
Chr3	CDS	79960667	79960790	79960667	ID=cds.MsaT014897.1;Parent=MsaT014897.1
Chr3	exon	79961234	79961670	79961234	ID=MsaT014897.1.exon6;Parent=MsaT014897.1
Chr3	CDS	79961234	79961670	79961234	ID=cds.MsaT014897.1;Parent=MsaT014897.1

Gene Sequence

>MsaT014897.1

ATGATGATGGGTTGCTGCTTTAGTGCAAAGGTCAAAGCTGAGAGTCCTACACATAATGGTTTGAATTCAAAGGTTGTCGGGAGAGAAGAGGATGTTTCGAGTGGTTTAAACAGAAAGGCCTCTTCTTCATCTGTGCTTCTAAGCTCTAGGACTGAGGGTGAGATATTGCAATCCAACTATTTGAAGTGTTTCACTATCAACGAGGTAAGAGCCGCAACAAGGAACTTTCGTCCAGATAGTATGATTGGCGAAGGTGGATTTGGTTGTGTATTTAAGGGTTGGATCGACGAGCACACACTCGCTCCTACTAAACCAGGTACTGGTTTTGTTATTGCTGTCAAGAGGCTTAACCAAGAAAGCAATCAGGGACATAGTGAATGGTTGACAGAAATCAATTACCTTGGACAGCTGCATCATCCAAATCTAGTAAAACTGATAGGTTACTGCTTAGAGGATGACTACCGGATTTTGGTATATGAATTTGTGACCAAAGGAAGTTTGGATAATCATTTGTTTAGAAGAGCTTCTTACTTTCAGCCACTCTCTTGGAAAATCCGAATGAAGATAGCTCTTGATTCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTCGAAGTTATATATCGAGACTTCAAAACTTCTAACATCTTGATTGATTCTAATTATAATGCAAAACTCTCAGATTTCGGGATGGCAAAAGATGGACCAGAAGGTGGTAAGAGTCATGTCTCTACAAGAATAATGGGCACCCCTGGCTATGCAGCTCCTGAGTATTTAGCCACAGGTCACCTAACCAAAAAGAGTGATGTATACAGTTTTGGGGTCGTTCTCCTAGAAATTATGTCAGGCAAACGTGTATTGGATAAAAACCGACCGTCTGGAGAGCATGATTTAGTTGCATGGGCCAAGCCATTACTCATGAGCAAACGTAAGATTTCTCAAGTTATGGATGCTCGTATAGAAGGCCAATACTCGTCGCGTGAAGCAATTAAAGTAGCTCATGTTGCAATTCGATGTCTGTCGGCAGAACAAAAATATAGACCAAACATTGAAGAGGTGGTGAGATCGTTGGAACAACTTCAGGAATCCAATGATAAAACAAATGGGCATAGCTCAAGCAACAGTGGTTCAAAACAGCATGGAAAAAACGTCGATGAATCTTTAAGCGGAGAAGGTACTTCTAATATGAGTTCATCTGCTGCTTCACCTCTCCATCAGTAG

Protein sequence

>MsaT014897.1

MMMGCCFSAKVKAESPTHNGLNSKVVGREEDVSSGLNRKASSSSVLLSSRTEGEILQSNYLKCFTINEVRAATRNFRPDSMIGEGGFGCVFKGWIDEHTLAPTKPGTGFVIAVKRLNQESNQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDYRILVYEFVTKGSLDNHLFRRASYFQPLSWKIRMKIALDSAKGLAFLHSDEVEVIYRDFKTSNILIDSNYNAKLSDFGMAKDGPEGGKSHVSTRIMGTPGYAAPEYLATGHLTKKSDVYSFGVVLLEIMSGKRVLDKNRPSGEHDLVAWAKPLLMSKRKISQVMDARIEGQYSSREAIKVAHVAIRCLSAEQKYRPNIEEVVRSLEQLQESNDKTNGHSSSNSGSKQHGKNVDESLSGEGTSNMSSSAASPLHQ*