AlfalfaGEDB | MsaG014899

M. sativa ssp. caerulea / MsaG014899

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014899	MCI16506.1	88.000	75	6	1	3	74	2	76	3.88e-39	136

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014899	sp\|Q65XV8\|RK176_ORYSJ	73.333	75	17	1	3	74	182	256	1.80e-31	115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014899	tr\|A0A392PYU6\|A0A392PYU6_9FABA	88.000	75	6	1	3	74	2	76	1.85e-39	136

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014899	MtrunA17_Chr3g0111631	90.667	75	4	1	3	74	188	262	1.85e-41	139
MsaG014899	MtrunA17_Chr2g0328171	77.333	75	14	1	3	74	186	260	1.13e-33	119
MsaG014899	MtrunA17_Chr5g0435211	74.667	75	16	1	3	74	187	261	3.10e-33	117
MsaG014899	MtrunA17_Chr7g0238671	73.333	75	17	1	3	74	185	259	1.32e-31	113
MsaG014899	MtrunA17_Chr5g0406841	66.667	75	22	1	3	74	258	332	1.86e-28	105
MsaG014899	MtrunA17_Chr5g0416011	68.421	76	20	2	3	74	245	320	4.85e-28	104
MsaG014899	MtrunA17_Chr8g0362661	68.421	76	20	2	3	74	243	318	7.97e-28	103
MsaG014899	MtrunA17_Chr2g0300711	65.333	75	23	1	3	74	186	260	2.11e-27	102
MsaG014899	MtrunA17_Chr5g0408941	64.000	75	24	1	3	74	198	272	2.21e-27	102
MsaG014899	MtrunA17_Chr8g0388941	62.667	75	25	1	3	74	178	252	4.56e-27	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014899	AT1G07570.4	74.667	75	16	1	3	74	64	138	2.14e-32	113
MsaG014899	AT1G07570.3	74.667	75	16	1	3	74	191	265	2.53e-31	113
MsaG014899	AT2G28930.1	74.667	75	16	1	3	74	192	266	3.18e-31	112
MsaG014899	AT2G28930.2	74.667	75	16	1	3	74	181	255	3.21e-31	112
MsaG014899	AT1G07570.1	74.667	75	16	1	3	74	180	254	3.52e-31	112
MsaG014899	AT1G07570.5	74.667	75	16	1	3	74	180	254	3.52e-31	112
MsaG014899	AT1G07570.2	74.667	75	16	1	3	74	180	254	3.52e-31	112
MsaG014899	AT2G28930.3	74.667	75	16	1	3	74	184	258	3.73e-31	112
MsaG014899	AT5G02290.2	65.823	79	24	1	3	78	180	258	1.12e-29	108
MsaG014899	AT5G02290.1	65.823	79	24	1	3	78	180	258	1.12e-29	108

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Find 18 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCAAAACTCTCGGATTT+TGG	0.108994	3:+79978431	MsaT014899.1:CDS
ACAAGGATAATGGGCACCCC+AGG	0.555407	3:+79978497	MsaT014899.1:CDS
ACATGACTCTTCCCACCTTC+TGG	0.350570	3:-79978470	None:intergenic
ACTCAGGAGCTGCATAGCCT+GGG	0.512030	3:-79978514	None:intergenic
ATACCTGTGGCTAGATACTC+AGG	0.538416	3:-79978530	None:intergenic
ATGGCAAAAGATGGACCAGA+AGG	0.625129	3:+79978455	MsaT014899.1:CDS
CAAAAGATGGACCAGAAGGT+GGG	0.643789	3:+79978459	MsaT014899.1:CDS
CATGTCTCTACAAGGATAAT+GGG	0.426151	3:+79978488	MsaT014899.1:CDS
CTCAGGAGCTGCATAGCCTG+GGG	0.646521	3:-79978513	None:intergenic
GAACTATAATGCAAAACTCT+CGG	0.548487	3:+79978424	MsaT014899.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	79978243	79978675	79978243	ID=MsaG014899
Chr3	mRNA	79978243	79978675	79978243	ID=MsaT014899.1;Parent=MsaG014899
Chr3	exon	79978243	79978341	79978243	ID=MsaT014899.1.exon1;Parent=MsaT014899.1
Chr3	CDS	79978243	79978341	79978243	ID=cds.MsaT014899.1;Parent=MsaT014899.1
Chr3	exon	79978425	79978548	79978425	ID=MsaT014899.1.exon2;Parent=MsaT014899.1
Chr3	CDS	79978425	79978548	79978425	ID=cds.MsaT014899.1;Parent=MsaT014899.1
Chr3	exon	79978662	79978675	79978662	ID=MsaT014899.1.exon3;Parent=MsaT014899.1
Chr3	CDS	79978662	79978675	79978662	ID=cds.MsaT014899.1;Parent=MsaT014899.1

Gene Sequence	>MsaT014899.1 ATGAAGCAGTTAGCTCTTGATTCTACCAAGGGTCTTCACAGTGATGAAGTCGAAGTGATATATCGAGACTTCAAAACTTTTAACATCTTGATTGATTCTAACTATAATGCAAAACTCTCGGATTTTGGGATGGCAAAAGATGGACCAGAAGGTGGGAAGAGTCATGTCTCTACAAGGATAATGGGCACCCCAGGCTATGCAGCTCCTGAGTATCTAGCCACAGAGAACTATAGTTAG
Protein sequence	>MsaT014899.1 MKQLALDSTKGLHSDEVEVIYRDFKTFNILIDSNYNAKLSDFGMAKDGPEGGKSHVSTRIMGTPGYAAPEYLATENYS*