AlfalfaGEDB | MsaG014900

M. sativa ssp. caerulea / MsaG014900

KEGG: K00924 K04733
GO: GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014900	XP_013460666.1	87.531	401	20	2	25	408	20	407	0.0	653

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014900	sp\|Q65XV8\|RK176_ORYSJ	59.599	349	110	3	53	383	42	377	1.23e-149	432

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014900	tr\|A0A072V936\|A0A072V936_MEDTR	87.531	401	20	2	25	408	20	407	0.0	653

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014900	MtrunA17_Chr3g0111631	87.531	401	20	2	25	408	20	407	0.0	653
MsaG014900	MtrunA17_Chr5g0435211	63.243	370	104	4	25	375	18	374	6.89e-166	471
MsaG014900	MtrunA17_Chr2g0328171	60.955	356	109	2	25	363	18	360	3.65e-157	449
MsaG014900	MtrunA17_Chr3g0111581	64.000	350	95	3	30	362	18	353	2.82e-151	432
MsaG014900	MtrunA17_Chr7g0238671	56.250	400	134	6	25	404	18	396	7.25e-150	430
MsaG014900	MtrunA17_Chr2g0328211	53.116	337	126	4	44	362	24	346	1.67e-125	366
MsaG014900	MtrunA17_Chr4g0031541	53.782	357	129	6	25	363	28	366	2.51e-125	368
MsaG014900	MtrunA17_Chr5g0416311	49.468	376	151	5	50	406	45	400	4.88e-125	367
MsaG014900	MtrunA17_Chr8g0362661	53.274	336	123	4	53	370	106	425	3.91e-121	360
MsaG014900	MtrunA17_Chr4g0031571	53.870	323	117	3	58	363	72	379	1.10e-119	354

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014900	AT1G07570.1	59.437	355	113	3	35	372	23	363	4.78e-148	426
MsaG014900	AT1G07570.5	59.437	355	113	3	35	372	23	363	4.78e-148	426
MsaG014900	AT1G07570.2	59.437	355	113	3	35	372	23	363	4.78e-148	426
MsaG014900	AT1G07570.3	59.437	355	113	3	35	372	34	374	1.36e-147	426
MsaG014900	AT5G02290.2	56.215	354	119	3	26	362	19	353	3.05e-146	421
MsaG014900	AT5G02290.1	56.215	354	119	3	26	362	19	353	3.05e-146	421
MsaG014900	AT2G28930.2	61.818	330	96	2	55	367	43	359	3.37e-146	422
MsaG014900	AT2G28930.3	61.446	332	98	2	53	367	44	362	3.89e-146	421
MsaG014900	AT2G28930.1	61.446	332	98	2	53	367	52	370	1.03e-145	421
MsaG014900	AT2G39660.1	59.581	334	105	2	49	365	35	355	3.14e-145	419

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Find 79 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCTTCTTCTACTGA+TGG	0.437033	3:-80011062	None:intergenic
AAACCAGTATCTGGTTTAGT+AGG	0.468213	3:-79988740	None:intergenic
AAAGGTTGTTACTAGAGATG+AGG	0.601900	3:+79988505	MsaT014900.1:CDS
AACTATAATGCAAAACTCTC+AGG	0.462373	3:+80009783	MsaT014900.1:CDS
AATCAAGAGCTATCTTCATT+CGG	0.480254	3:-79999559	None:intergenic
AATCATGCTCTCCAGATGGT+CGG	0.646583	3:-80010720	None:intergenic
AATGCAAAACTCTCAGGTTT+TGG	0.230218	3:+80009789	MsaT014900.1:CDS
ACAAGGATAATGGGCACACC+AGG	0.571720	3:+80009855	MsaT014900.1:CDS
ACATGACTCTTACCACCTTC+TGG	0.399568	3:-80009828	None:intergenic
ACGCAAGATCTCTCAAGTCA+TGG	0.562170	3:+80010777	MsaT014900.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	79988205	80011071	79988205	ID=MsaG014900
Chr3	mRNA	79988205	80011071	79988205	ID=MsaT014900.1;Parent=MsaG014900
Chr3	exon	79988205	79988277	79988205	ID=MsaT014900.1.exon1;Parent=MsaT014900.1
Chr3	CDS	79988205	79988277	79988205	ID=cds.MsaT014900.1;Parent=MsaT014900.1
Chr3	exon	79988495	79988820	79988495	ID=MsaT014900.1.exon2;Parent=MsaT014900.1
Chr3	CDS	79988495	79988820	79988495	ID=cds.MsaT014900.1;Parent=MsaT014900.1
Chr3	exon	79989086	79989171	79989086	ID=MsaT014900.1.exon3;Parent=MsaT014900.1
Chr3	CDS	79989086	79989171	79989086	ID=cds.MsaT014900.1;Parent=MsaT014900.1
Chr3	exon	79999312	79999400	79999312	ID=MsaT014900.1.exon4;Parent=MsaT014900.1
Chr3	CDS	79999312	79999400	79999312	ID=cds.MsaT014900.1;Parent=MsaT014900.1
Chr3	exon	79999525	79999667	79999525	ID=MsaT014900.1.exon5;Parent=MsaT014900.1
Chr3	CDS	79999525	79999667	79999525	ID=cds.MsaT014900.1;Parent=MsaT014900.1
Chr3	exon	80009783	80009906	80009783	ID=MsaT014900.1.exon6;Parent=MsaT014900.1
Chr3	CDS	80009783	80009906	80009783	ID=cds.MsaT014900.1;Parent=MsaT014900.1
Chr3	exon	80010686	80011071	80010686	ID=MsaT014900.1.exon7;Parent=MsaT014900.1
Chr3	CDS	80010686	80011071	80010686	ID=cds.MsaT014900.1;Parent=MsaT014900.1

Gene Sequence

>MsaT014900.1

ATGAGTTTGAACGATTTAATTCGTACAGTTCTTGAACTTGACGATCGTGATCTTATAACAGTTGGTTTTATAGGTTTGAATTCAAAGGTTGTTACTAGAGATGAGGATGTTTCAAGTGGTTTAAGCCGAAAGGCCTCTTCTTCATCTGTGCTTCTAAGCTCTAGGACTGAGGGCGAGATACTGCATTCAAACTATTTGAAGTGTTTCACTATCATTGAGATAAGAGCCGCAACAAGGAACTTTCGTCCAGATAGTATGATTGGCGAAGGTGGATTTGGTTGTGTATTTAAGGGTTGGATCGACGAGCACACACTAGCTCCTACTAAACCAGATACTGGTTTTGTTATTGCTGTGAAGAGGCTTAACAAAGAAAGCAATCAGGGACATAGTGAATGGTTGACAGAAATCAATTACCTTGGACAGCTGCATCATCCAAATCTAGTGAAACTGATAGGTTACTGCTTAGAGGATGACTACGGATTTTGTGTCACTTTAGAAGAAAAAAAAATGTTTCAAAATGAATGTCACTTTACATTTGTGACCAAAGGAAGTTTGGATAATCATTTGTTTAGAAGAGCTTCTTACTTTCAGCCACTCTCTTGGAAAATCCGAATGAAGATAGCTCTTGATTCTGCTAAGGGTCTCGCATTTCTTCACAGTGATGAAGTCGAAGTTATATATCGAGACTTCAAAACTTCTAACATCTTGATTGATTCTAACTATAATGCAAAACTCTCAGGTTTTGGGATGGCAAAAGATGGACCAGAAGGTGGTAAGAGTCATGTCTCTACAAGGATAATGGGCACACCAGGCTATGCAGCTCCCGAGTATTTAGCCACAGAAATTATGTCAGGCAAACGTGTACTGGATAAAAACCGACCATCTGGAGAGCATGATTTAGTTGCATGGGCCAAGCCATTACTCATGAGCAAACGCAAGATCTCTCAAGTCATGGATGCTCGTATTGAACGCCAATACTCGTCGTGTGAAGCAATTAAAGTAGCTCATGTTGCAATTCGATGTCTGTCGGCAGAACAAAAATATAGACCAACCATTGAAGAGGTGGTGAGATCGTTGGAACAACTTCAGGATTCCAATGACAAAGCAAATGGTCATAGCTCAAGCAGCAGTGGTTCAAAACAACATGGAAAAAGCGTCGATGAATCTTTAAGCGGAGAAGGTAATTCTAATATGAGTTCATCTGCTGCTTCACCTCTCCATCAGTAG

Protein sequence

>MsaT014900.1

MSLNDLIRTVLELDDRDLITVGFIGLNSKVVTRDEDVSSGLSRKASSSSVLLSSRTEGEILHSNYLKCFTIIEIRAATRNFRPDSMIGEGGFGCVFKGWIDEHTLAPTKPDTGFVIAVKRLNKESNQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDYGFCVTLEEKKMFQNECHFTFVTKGSLDNHLFRRASYFQPLSWKIRMKIALDSAKGLAFLHSDEVEVIYRDFKTSNILIDSNYNAKLSGFGMAKDGPEGGKSHVSTRIMGTPGYAAPEYLATEIMSGKRVLDKNRPSGEHDLVAWAKPLLMSKRKISQVMDARIERQYSSCEAIKVAHVAIRCLSAEQKYRPTIEEVVRSLEQLQDSNDKANGHSSSSSGSKQHGKSVDESLSGEGNSNMSSSAASPLHQ*