AlfalfaGEDB | MsaG014932

M. sativa ssp. caerulea / MsaG014932

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014932	XP_013460707.1	93.462	260	16	1	1	259	1	260	0.0	511

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014932	sp\|O80942\|ZFP10_ARATH	75.439	57	11	1	33	89	18	71	5.83e-23	98.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014932	tr\|A0A072UZ72\|A0A072UZ72_MEDTR	93.462	260	16	1	1	259	1	260	0.0	511

TFs/TRs:

Gene ID	Type	Classification
MsaG014932	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG014932	MsaG044624	0.800816	2.019506e-48	2.781291e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014932	MtrunA17_Chr3g0112181	93.462	260	16	1	1	259	1	260	0.0	511
MsaG014932	MtrunA17_Chr5g0435711	47.674	258	93	13	8	259	11	232	1.06e-51	168
MsaG014932	MtrunA17_Chr4g0009461	57.282	103	30	3	33	121	36	138	4.64e-30	114
MsaG014932	MtrunA17_Chr5g0400571	71.930	57	15	1	33	89	59	114	2.79e-23	95.1
MsaG014932	MtrunA17_Chr2g0315591	49.398	83	39	1	10	89	2	84	2.32e-19	84.0
MsaG014932	MtrunA17_Chr1g0184381	80.952	42	8	0	49	90	29	70	7.40e-18	79.0
MsaG014932	MtrunA17_Chr7g0239441	70.000	50	15	0	55	104	37	86	6.69e-16	72.8
MsaG014932	MtrunA17_Chr4g0032111	62.500	48	18	0	54	101	20	67	7.96e-15	70.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG014932	AT2G37740.1	75.439	57	11	1	33	89	18	71	5.93e-24	98.2
MsaG014932	AT4G17810.1	30.804	224	113	4	30	253	19	200	1.23e-23	95.1
MsaG014932	AT5G06070.1	37.295	244	104	10	25	259	22	225	6.59e-23	94.0
MsaG014932	AT4G17810.2	69.091	55	17	0	30	84	19	73	1.09e-22	92.0
MsaG014932	AT3G23130.1	82.927	41	7	0	47	87	37	77	5.00e-18	80.1
MsaG014932	AT2G42410.2	78.049	41	9	0	48	88	40	80	3.05e-17	78.6
MsaG014932	AT2G42410.1	78.049	41	9	0	48	88	40	80	3.05e-17	78.6
MsaG014932	AT2G42410.3	78.049	41	9	0	48	88	66	106	3.27e-17	79.0
MsaG014932	AT3G09290.1	63.636	44	16	0	55	98	33	76	1.19e-12	65.1
MsaG014932	AT3G53820.1	68.571	35	11	0	55	89	19	53	3.88e-11	60.1

Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATATTCTTCTTCAATTAGA+TGG	0.176609	3:-80405710	MsaT014932.1:CDS
TGTTGAAACAAGTTTGTCTA+TGG	0.217128	3:-80405598	MsaT014932.1:CDS
TTCCCAAGACTTGTTGTTGA+TGG	0.233876	3:+80406097	None:intergenic
TTTAGGTCTGCTCAAGCTTT+AGG	0.265540	3:-80405984	MsaT014932.1:CDS
GCTTAGCTCTATCTCTTCTA+TGG	0.294197	3:+80405946	None:intergenic
AATGAAGTTCTAATTCATTA+TGG	0.297493	3:+80405904	None:intergenic
GGACAAAATAATTCAATGTT+TGG	0.329063	3:-80405576	MsaT014932.1:CDS
AGATCCAAGTCTTCTATTCC+AGG	0.334055	3:+80405387	None:intergenic
GGATACTTGGTGGATGTATA+TGG	0.348621	3:-80406046	MsaT014932.1:CDS
GAAGAAATGGAAGCTGTCTT+TGG	0.357856	3:+80405492	None:intergenic
GAAGAGTTATCTCTGCTTGT+TGG	0.403326	3:+80405789	None:intergenic
CAGTCTGCAGAGTTTGTGGT+TGG	0.405826	3:-80405417	MsaT014932.1:CDS
TAAATATGATGTGGATGAAA+AGG	0.412314	3:-80406166	MsaT014932.1:CDS
GACAGGCAGTGAAGAAGAAA+TGG	0.412947	3:+80405479	None:intergenic
TCTTGTGTAGATGCAGTTGA+TGG	0.423703	3:+80405759	None:intergenic
GAAAATTTGTTCCCTTGCAT+TGG	0.427727	3:+80405644	None:intergenic
AATGAAGGAGTGCCATCATT+TGG	0.429411	3:-80406122	MsaT014932.1:CDS
GAAGAATATGAAGACATGTT+TGG	0.429891	3:+80405723	None:intergenic
ATATTCTTCTTCAATTAGAT+GGG	0.438910	3:-80405709	MsaT014932.1:CDS
GAAGATGCAGCTAGGATACT+TGG	0.443307	3:-80406059	MsaT014932.1:CDS
GAACCATCAACAACAAGTCT+TGG	0.447185	3:-80406100	MsaT014932.1:CDS
ACTTCTGTAAAAGAGAGTTT+AGG	0.451370	3:-80406001	MsaT014932.1:CDS
TTGGATCTTGAACTCAGGCT+TGG	0.454061	3:-80405372	MsaT014932.1:CDS
TGGATCTTGAACTCAGGCTT+GGG	0.459255	3:-80405371	MsaT014932.1:CDS
AAACATGGCTTCAGCAAGAC+AGG	0.470524	3:+80405462	None:intergenic
AAGTGACATGAGTAAGATCT+TGG	0.483411	3:+80406020	None:intergenic
TTTGTGGTTGGAGTTAAGCC+TGG	0.483977	3:-80405405	MsaT014932.1:CDS
TTGTTGATGGTTCCAAATGA+TGG	0.490417	3:+80406110	None:intergenic
AACCATCAACAACAAGTCTT+GGG	0.510991	3:-80406099	MsaT014932.1:CDS
GTTGAAACAAGTTTGTCTAT+GGG	0.512192	3:-80405597	MsaT014932.1:CDS
AAGACTTGGATCTTGAACTC+AGG	0.538252	3:-80405377	MsaT014932.1:CDS
GAGTCTCTTGATTCTGAACA+AGG	0.543085	3:-80405672	MsaT014932.1:CDS
AGGTCTGCTCAAGCTTTAGG+TGG	0.544624	3:-80405981	MsaT014932.1:CDS
AACAAGGGCTAGCCAATGCA+AGG	0.549159	3:-80405656	MsaT014932.1:CDS
TAAGCCTGGAATAGAAGACT+TGG	0.563435	3:-80405391	MsaT014932.1:CDS
ATCTTGCACTCACACAATGA+AGG	0.564898	3:-80406137	MsaT014932.1:CDS
GCAGAGATAACTCTTCTACT+TGG	0.579663	3:-80405782	MsaT014932.1:CDS
TATTCTTCTTCAATTAGATG+GGG	0.582180	3:-80405708	MsaT014932.1:CDS
GATGCAGCTAGGATACTTGG+TGG	0.596955	3:-80406056	MsaT014932.1:CDS
TGACATGAGTAAGATCTTGG+AGG	0.599612	3:+80406023	None:intergenic
ACTGATGATGATTCATGTGG+TGG	0.616045	3:-80405540	MsaT014932.1:CDS
CTGATGATGATTCATGTGGT+GGG	0.621213	3:-80405539	MsaT014932.1:CDS
ATTCTTCTTCAATTAGATGG+GGG	0.625385	3:-80405707	MsaT014932.1:CDS
AGGAATCACTAAATATGATG+TGG	0.652487	3:-80406175	MsaT014932.1:CDS
AAACATCTATCATTCAAACA+TGG	0.662081	3:+80405447	None:intergenic
TGATGATGATTCATGTGGTG+GGG	0.671193	3:-80405538	MsaT014932.1:CDS
ACAAGGGCTAGCCAATGCAA+GGG	0.692695	3:-80405655	MsaT014932.1:CDS
AGTCTCTTGATTCTGAACAA+GGG	0.707551	3:-80405671	MsaT014932.1:CDS
CAAACTGATGATGATTCATG+TGG	0.716039	3:-80405543	MsaT014932.1:CDS
CAGAATCAAGAGACTCCATG+TGG	0.748859	3:+80405679	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	80405350	80406201	80405350	ID=MsaG014932
Chr3	mRNA	80405350	80406201	80405350	ID=MsaT014932.1;Parent=MsaG014932
Chr3	exon	80405350	80405813	80405350	ID=MsaT014932.1.exon2;Parent=MsaT014932.1
Chr3	CDS	80405350	80405813	80405350	ID=cds.MsaT014932.1;Parent=MsaT014932.1
Chr3	exon	80405886	80406201	80405886	ID=MsaT014932.1.exon1;Parent=MsaT014932.1
Chr3	CDS	80405886	80406201	80405886	ID=cds.MsaT014932.1;Parent=MsaT014932.1

Gene Sequence

>MsaT014932.1

ATGGAGGAATCACTAAATATGATGTGGATGAAAAGGAAACAAATCTTGCACTCACACAATGAAGGAGTGCCATCATTTGGAACCATCAACAACAAGTCTTGGGAAGAAAAAGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGTATATGGCCTCCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTCCATAGAAGAGATAGAGCTAAGCTCAAACAAAGTCTTAGCAACCATAATGAATTAGAACTTCATTCTCATCACAAAAATCATTTTCCAACAAGCAGAGATAACTCTTCTACTTGGCCATCAACTGCATCTACACAAGAAAAGTGTTTTGAGCCAAACATGTCTTCATATTCTTCTTCAATTAGATGGGGGAATAACCACATGGAGTCTCTTGATTCTGAACAAGGGCTAGCCAATGCAAGGGAACAAATTTTCAAAGGTTATGGCTGTAATGATTATGTTGAAACAAGTTTGTCTATGGGACAAAATAATTCAATGTTTGGCCAAAAATTGCAAACTGATGATGATTCATGTGGTGGGGACAAAGACATAAGTTATAAAAGACCAAAGACAGCTTCCATTTCTTCTTCACTGCCTGTCTTGCTGAAGCCATGTTTGAATGATAGATGTTTAACTTTTCAGTCTGCAGAGTTTGTGGTTGGAGTTAAGCCTGGAATAGAAGACTTGGATCTTGAACTCAGGCTTGGGAAACTAACACAGAAAGTTTAG

Protein sequence

>MsaT014932.1

MEESLNMMWMKRKQILHSHNEGVPSFGTINNKSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRAKLKQSLSNHNELELHSHHKNHFPTSRDNSSTWPSTASTQEKCFEPNMSSYSSSIRWGNNHMESLDSEQGLANAREQIFKGYGCNDYVETSLSMGQNNSMFGQKLQTDDDSCGGDKDISYKRPKTASISSSLPVLLKPCLNDRCLTFQSAEFVVGVKPGIEDLDLELRLGKLTQKV*