AlfalfaGEDB | MsaG015005

M. sativa ssp. caerulea / MsaG015005

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015005	XP_003600854.2	91.667	216	18	0	1	216	1	216	1.95e-135	389

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015005	sp\|Q8S9H7\|DIV_ANTMA	36.842	133	68	3	48	171	76	201	3.33e-15	75.9

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015005	tr\|G7JAP1\|G7JAP1_MEDTR	91.667	216	18	0	1	216	1	216	9.32e-136	389

TFs/TRs:

Gene ID	Type	Classification
MsaG015005	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015005	MtrunA17_Chr3g0113121	91.667	216	18	0	1	216	1	216	1.79e-139	389
MsaG015005	MtrunA17_Chr5g0436501	41.401	157	78	6	21	171	48	196	9.67e-21	87.4
MsaG015005	MtrunA17_Chr5g0429521	37.209	129	68	2	49	171	80	201	1.88e-17	79.0
MsaG015005	MtrunA17_Chr5g0440731	57.143	77	27	4	92	167	102	173	4.25e-17	77.8
MsaG015005	MtrunA17_Chr3g0104071	35.583	163	85	4	20	171	63	216	1.01e-16	77.4
MsaG015005	MtrunA17_Chr5g0409841	36.879	141	78	4	38	174	32	165	1.22e-16	75.9
MsaG015005	MtrunA17_Chr7g0241761	40.708	113	53	3	59	171	111	209	6.60e-16	74.7
MsaG015005	MtrunA17_Chr5g0440741	58.904	73	24	4	96	167	101	168	6.68e-16	74.7
MsaG015005	MtrunA17_Chr5g0409831	43.023	86	43	2	61	140	37	122	9.62e-16	73.2
MsaG015005	MtrunA17_Chr3g0135671	38.136	118	57	2	49	166	57	158	4.23e-15	71.6
MsaG015005	MtrunA17_Chr1g0210471	32.639	144	79	3	27	170	67	192	9.48e-14	68.2
MsaG015005	MtrunA17_Chr4g0059701	33.333	117	66	2	24	140	25	129	1.21e-13	68.2
MsaG015005	MtrunA17_Chr1g0162081	45.570	79	36	2	92	170	119	190	1.04e-12	65.9
MsaG015005	MtrunA17_Chr2g0331031	39.759	83	43	1	86	168	100	175	1.57e-12	65.5
MsaG015005	MtrunA17_Chr6g0488471	51.724	58	26	1	83	140	87	142	2.76e-12	64.3
MsaG015005	MtrunA17_Chr4g0055931	36.607	112	52	2	59	170	71	163	3.45e-12	64.3
MsaG015005	MtrunA17_Chr4g0062741	44.304	79	37	2	92	170	135	206	4.21e-12	63.9
MsaG015005	MtrunA17_Chr5g0415191	47.368	57	30	0	84	140	91	147	5.53e-12	63.9
MsaG015005	MtrunA17_Chr5g0432921	45.833	96	43	5	64	158	85	172	6.71e-12	62.8
MsaG015005	MtrunA17_Chr8g0389241	44.000	75	34	1	92	166	102	168	1.04e-11	62.8
MsaG015005	MtrunA17_Chr8g0365011	35.294	153	65	7	32	170	42	174	1.98e-11	62.0
MsaG015005	MtrunA17_Chr6g0452791	56.522	46	20	0	95	140	80	125	9.84e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015005	AT5G05790.2	42.188	128	62	3	49	172	82	201	1.54e-20	87.4
MsaG015005	AT5G05790.1	42.188	128	62	3	49	172	82	201	1.54e-20	87.4
MsaG015005	AT3G11280.2	38.854	157	78	7	21	172	54	197	1.16e-19	84.7
MsaG015005	AT3G11280.1	38.854	157	78	7	21	172	54	197	1.16e-19	84.7
MsaG015005	AT5G01200.1	45.299	117	50	4	56	171	112	215	2.17e-18	81.6
MsaG015005	AT2G38090.1	37.069	116	63	2	59	171	102	210	1.94e-16	76.6
MsaG015005	AT5G58900.1	44.681	94	45	1	78	171	124	210	4.86e-16	75.5
MsaG015005	AT5G08520.1	36.207	174	84	9	12	169	23	185	9.23e-16	74.7
MsaG015005	AT4G09450.1	39.837	123	61	4	70	186	66	181	3.47e-14	68.9
MsaG015005	AT5G04760.1	49.367	79	33	2	92	170	96	167	1.46e-13	67.4
MsaG015005	AT1G19000.2	50.877	57	28	0	84	140	91	147	5.00e-13	67.0
MsaG015005	AT1G19000.1	50.877	57	28	0	84	140	91	147	5.00e-13	67.0
MsaG015005	AT1G70000.1	41.096	73	41	1	70	140	71	143	1.62e-12	65.1
MsaG015005	AT1G70000.2	41.096	73	41	1	70	140	71	143	1.62e-12	65.1
MsaG015005	AT5G47390.1	44.444	81	38	1	86	166	87	160	1.83e-12	65.9
MsaG015005	AT3G10580.2	46.835	79	33	1	92	170	92	161	2.23e-12	64.7
MsaG015005	AT3G10580.1	46.835	79	33	1	92	170	92	161	2.37e-12	65.1
MsaG015005	AT1G49010.1	45.570	79	36	2	92	170	131	202	3.23e-12	64.7
MsaG015005	AT5G56840.1	52.632	57	27	0	92	148	88	144	1.87e-11	62.0
MsaG015005	AT5G61620.1	45.570	79	36	1	92	170	105	176	3.86e-11	61.6
MsaG015005	AT1G74840.2	55.102	49	22	0	92	140	93	141	6.15e-11	60.5
MsaG015005	AT1G74840.1	55.102	49	22	0	92	140	93	141	6.50e-11	60.8
MsaG015005	AT3G16350.1	48.148	54	28	0	87	140	129	182	8.78e-11	60.8

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATGATCTTGATCACATTCT+TGG	0.190525	3:-81446769	None:intergenic
TCAACCAATAATCATCTTCT+TGG	0.216049	3:-81446106	None:intergenic
ATTTCCAAGAAGATGATTAT+TGG	0.238910	3:+81446102	MsaT015005.1:CDS
GACTCATATGCGTGGTTATT+TGG	0.243758	3:+81446686	MsaT015005.1:CDS
ATAACTACTCTTGATCTTCT+TGG	0.251399	3:+81446656	MsaT015005.1:CDS
AGTTCTATTGTTATTATTAT+CGG	0.281602	3:-81446273	None:intergenic
TTTGAGCATGGCTTGCTACT+TGG	0.356659	3:-81446553	None:intergenic
AAAATATCAAAAGGAAACTT+AGG	0.373972	3:+81446618	MsaT015005.1:CDS
CATTCAAGAAAGTGGTTCAT+TGG	0.387227	3:+81446324	MsaT015005.1:CDS
AGAATGGTAGAGAATATTCT+AGG	0.388611	3:+81446053	None:intergenic
TTGAGCATGGCTTGCTACTT+GGG	0.417939	3:-81446552	None:intergenic
TATTTGTAGGCGTTTCTTGA+AGG	0.450413	3:+81446460	MsaT015005.1:intron
AAATATCAAAAGGAAACTTA+GGG	0.461487	3:+81446619	MsaT015005.1:CDS
AGATGATTATTGGTTGATGA+AGG	0.467158	3:+81446112	MsaT015005.1:CDS
AAAGTGGAAAGAAATCTCTA+AGG	0.472931	3:+81446505	MsaT015005.1:CDS
AAAGAAATCATTCAAGAAAG+TGG	0.476326	3:+81446316	MsaT015005.1:CDS
ATTTGTAGGCGTTTCTTGAA+GGG	0.494586	3:+81446461	MsaT015005.1:intron
GATCAAGAGTAGTTATATCA+TGG	0.499404	3:-81446649	None:intergenic
TACACGGCAAAGACGGAAAG+TGG	0.504210	3:+81446489	MsaT015005.1:CDS
GCATGGCTTGCTACTTGGGA+TGG	0.505418	3:-81446548	None:intergenic
TCTTGTCGTCTTCAATCACT+TGG	0.511899	3:-81446712	None:intergenic
GGACTTCTACACGGCAAAGA+CGG	0.559413	3:+81446482	MsaT015005.1:CDS
ATACATATGAACATATCAAG+TGG	0.590413	3:-81446804	None:intergenic
TTCTTGAAGGGACTTCTACA+CGG	0.594579	3:+81446473	MsaT015005.1:CDS
GAAGACGACAAGAATAACAA+TGG	0.599172	3:+81446722	MsaT015005.1:CDS
TCAGCACAACATCGATGAAG+TGG	0.609150	3:+81446166	MsaT015005.1:CDS
TTATTATTATCGGTTGCATG+AGG	0.632701	3:-81446263	None:intergenic
ATGCTCAAAAGTACGAACAA+AGG	0.658529	3:+81446567	MsaT015005.1:CDS
GCACAACATCGATGAAGTGG+TGG	0.668571	3:+81446169	MsaT015005.1:CDS
AATATCAAAAGGAAACTTAG+GGG	0.670754	3:+81446620	MsaT015005.1:CDS
GAAGTGATGACTCATATGCG+TGG	0.764866	3:+81446678	MsaT015005.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	81446056	81446811	81446056	ID=MsaG015005
Chr3	mRNA	81446056	81446811	81446056	ID=MsaT015005.1;Parent=MsaG015005
Chr3	exon	81446056	81446363	81446056	ID=MsaT015005.1.exon1;Parent=MsaT015005.1
Chr3	CDS	81446056	81446363	81446056	ID=cds.MsaT015005.1;Parent=MsaT015005.1
Chr3	exon	81446469	81446811	81446469	ID=MsaT015005.1.exon2;Parent=MsaT015005.1
Chr3	CDS	81446469	81446811	81446469	ID=cds.MsaT015005.1;Parent=MsaT015005.1

Gene Sequence

>MsaT015005.1

ATGGTAGAGAATATTCTAGGTTACAGTCTTCATAGCATGATGAATAATTTCCAAGAAGATGATTATTGGTTGATGAAGGAAACTATGCTATGTAGTGTTGATCAAATCAATCAGCACAACATCGATGAAGTGGTGGTAGAAAATAATATTGCATCGACGAGCGTTTCACTTTTTGGATATGATTCAGTTGATTCTTTCAACTTCTCTCCTCATGCAACCGATAATAATAACAATAGAACTACGAATATCGTAGAATCCAAAAAGAAATCATTCAAGAAAGTGGTTCATTGGTCACGTGATGAACACATGCGTTTCTTGAAGGGACTTCTACACGGCAAAGACGGAAAGTGGAAAGAAATCTCTAAGGACTATGTAAAAACAAAGACTCCATCCCAAGTAGCAAGCCATGCTCAAAAGTACGAACAAAGGCAAAAGCAAAGACTTGATGATGATAGCAAAAATATCAAAAGGAAACTTAGGGGTAGCATCCATGATATAACTACTCTTGATCTTCTTGGAAGTGATGACTCATATGCGTGGTTATTTGGTGACCAAGTGATTGAAGACGACAAGAATAACAATGGATCACTCTCAGTCACAAATTTCAACCAAGAATGTGATCAAGATCATGAAGTTGTTGCTTCCACTTGA

Protein sequence

>MsaT015005.1

MVENILGYSLHSMMNNFQEDDYWLMKETMLCSVDQINQHNIDEVVVENNIASTSVSLFGYDSVDSFNFSPHATDNNNNRTTNIVESKKKSFKKVVHWSRDEHMRFLKGLLHGKDGKWKEISKDYVKTKTPSQVASHAQKYEQRQKQRLDDDSKNIKRKLRGSIHDITTLDLLGSDDSYAWLFGDQVIEDDKNNNGSLSVTNFNQECDQDHEVVAST*