AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG015043


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015043 MtrunA17_Chr3g0113591 97.371 875 22 1 1 874 1 875 0.0 1709
MsaG015043 MtrunA17_Chr6g0479161 32.991 682 325 24 46 673 172 775 1.75e-80 282
MsaG015043 MtrunA17_Chr6g0479161 26.600 500 288 17 264 728 271 726 9.09e-18 89.0
MsaG015043 MtrunA17_Chr4g0012511 33.988 662 302 24 59 673 33 606 2.96e-79 277
MsaG015043 MtrunA17_Chr4g0012511 33.254 418 197 23 124 484 240 632 6.19e-31 131
MsaG015043 MtrunA17_Chr4g0012511 26.929 609 275 21 209 746 108 617 6.52e-27 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015043 AT5G05660.1 68.290 842 262 4 32 873 44 880 0.0 1159
MsaG015043 AT1G10170.2 37.305 512 245 20 59 517 137 625 3.60e-72 258
MsaG015043 AT1G10170.2 27.379 515 274 22 264 730 219 681 1.16e-18 92.0
MsaG015043 AT1G10170.1 37.109 512 246 19 59 517 209 697 4.57e-72 258
MsaG015043 AT1G10170.3 37.109 512 246 19 59 517 209 697 4.57e-72 258
MsaG015043 AT1G10170.4 37.305 512 245 20 59 517 209 697 8.10e-72 258

Find 261 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATGGAGATTGGCATTTA+TGG 0.131635 3:-81967820 None:intergenic
CCTTTGTTTCTGTGGTAAAT+TGG 0.180269 3:+81966783 MsaT015043.1:CDS
CTTGTTGCTGCTACTCATTT+TGG 0.195985 3:+81972806 MsaT015043.1:CDS
GGATATTCAACTCTACATTT+AGG 0.239357 3:-81966736 None:intergenic
TTAGAGCATTTCTCAGGATT+TGG 0.242112 3:-81971563 None:intergenic
GTGGCCATGCATGCAAATTA+AGG 0.257368 3:+81970252 MsaT015043.1:CDS
GCCTTGTGATGCTCCTTTGC+AGG 0.257965 3:+81967305 MsaT015043.1:CDS
GGACATTGTTTACGACATTT+AGG 0.259077 3:-81968667 None:intergenic
CAAGCAATTGTCACCATTAT+AGG 0.261000 3:-81968224 None:intergenic
TGTGAGAAAGGGTGTCATTC+TGG 0.265601 3:+81967213 MsaT015043.1:CDS
TGTTTGCTTCTTTGTCATCC+TGG 0.280163 3:+81966895 MsaT015043.1:CDS
TAGCCTCACAAATGCCATTA+TGG 0.294548 3:+81970185 MsaT015043.1:intron
TCCTGAGAAATGCTCTAAAA+AGG 0.302844 3:+81971568 MsaT015043.1:CDS
CATGGTCTCCATTCTAGTTC+TGG 0.303447 3:-81970619 None:intergenic
CTTGGAGAGGTCGGCGGTGG+TGG 0.308800 3:-81966479 None:intergenic
TAGAGCATTTCTCAGGATTT+GGG 0.321931 3:-81971562 None:intergenic
GTCGGGCGCGTGGTGTTTAT+AGG 0.322716 3:+81967091 MsaT015043.1:CDS
CGTTGCCGTGTGGGTATCAT+AGG 0.331149 3:+81967352 MsaT015043.1:CDS
GCTTCACAAGCCTCACTTAT+CGG 0.338990 3:-81970932 None:intergenic
GGAGAGAGCGCCGGAGGAGG+AGG 0.347901 3:-81966521 None:intergenic
TTGAGAGTAAACTCGGGTTT+AGG 0.364996 3:-81970532 None:intergenic
AGGAGGAGGTGAGGAAGGAT+TGG 0.366373 3:-81966504 None:intergenic
CGGCGATTGTCCGCCGTGTC+GGG 0.369688 3:+81967074 MsaT015043.1:CDS
CTGTGCTCCTTGTCCTATAA+TGG 0.370946 3:+81968211 MsaT015043.1:CDS
TGCCCTCGGCGCTGCCACCC+TGG 0.373684 3:+81971184 MsaT015043.1:CDS
GGGCATAGGTGTGTACAATT+TGG 0.375115 3:-81971515 None:intergenic
GTTTGCTTCTTTGTCATCCT+GGG 0.376048 3:+81966896 MsaT015043.1:CDS
CAAATGCCAAACGCTGAAAA+AGG 0.389844 3:+81971773 MsaT015043.1:CDS
CAACAAAGTGAAAGTGTTCC+CGG 0.393694 3:+81970577 MsaT015043.1:CDS
GAGGTCGGCGGTGGTGGCAT+TGG 0.394715 3:-81966473 None:intergenic
CACATCTACGTACATCTTGA+TGG 0.400223 3:-81966969 None:intergenic
GACTACTATGGCTCAATGAT+TGG 0.400304 3:+81972837 MsaT015043.1:CDS
GGTGAGGAAGGATTGGATCT+TGG 0.401881 3:-81966497 None:intergenic
CAAATCCTACTTCAACTTCT+CGG 0.403703 3:+81966441 MsaT015043.1:CDS
GCAAGGAGGGCATGGAGTGC+CGG 0.406945 3:-81970596 None:intergenic
GGCGAAGCAGAGGGAGGTGC+AGG 0.408086 3:-81966590 None:intergenic
GAGAGCGCCGGAGGAGGAGG+AGG 0.408409 3:-81966518 None:intergenic
GTGAGAAAGGGTGTCATTCT+GGG 0.416222 3:+81967214 MsaT015043.1:CDS
TCACCAGGATGACATGTCTC+TGG 0.418360 3:-81971536 None:intergenic
CATACCTATGGCATGGAGAT+TGG 0.418852 3:-81967829 None:intergenic
GAACTTGTCCTTGTGGGAAA+AGG 0.419280 3:+81967268 MsaT015043.1:CDS
ACTTATCGGTGACTGGTTCA+TGG 0.419589 3:-81970918 None:intergenic
ATCTCTTCTGTATTCAAAGC+TGG 0.422257 3:+81966620 MsaT015043.1:CDS
TACCACAGTCGCGCAATGTC+TGG 0.422617 3:-81967593 None:intergenic
ACAATTCCAGAGAGATGTTT+CGG 0.423097 3:-81966713 None:intergenic
CAAGGAGGGCATGGAGTGCC+GGG 0.424570 3:-81970595 None:intergenic
CTTTGGTTTGAGAGTAAACT+CGG 0.433431 3:-81970539 None:intergenic
TAACATACCTGCAGTATTGT+TGG 0.434063 3:-81972645 None:intergenic
GTAGGATTTGAATATTGATT+CGG 0.435145 3:-81966428 None:intergenic
ATGTCCATCTTGTCCACAAT+TGG 0.435792 3:+81966921 MsaT015043.1:CDS
TAGAAGAAGCTGCTTTGCTC+TGG 0.437078 3:-81972762 None:intergenic
ATCCACCCAGTGATGATCCT+TGG 0.438172 3:+81966809 MsaT015043.1:CDS
TCCACCCAGTGATGATCCTT+GGG 0.443414 3:+81966810 MsaT015043.1:CDS
GGTTCCTTGTGGTACAGAAA+TGG 0.452483 3:+81968633 MsaT015043.1:intron
GTTGTCGTTGTGGAAGCCTT+AGG 0.454484 3:+81967436 MsaT015043.1:CDS
GTCAGTGTATGGAGACTTGT+AGG 0.455972 3:+81967397 MsaT015043.1:CDS
CTCCAGGGTGGCAGCGCCGA+GGG 0.456559 3:-81971186 None:intergenic
CATGCAAGGTGCTAATTAAA+CGG 0.457532 3:+81971218 MsaT015043.1:CDS
GATGCTCCTTTGCAGGTTTG+TGG 0.457622 3:+81967312 MsaT015043.1:CDS
CGTTTAATTAGCACCTTGCA+TGG 0.459105 3:-81971217 None:intergenic
TTGGGTACAAGGGACTACTA+TGG 0.459790 3:+81972825 MsaT015043.1:CDS
AAAATTTACCTTTGTTTCTG+TGG 0.461551 3:+81966775 MsaT015043.1:CDS
ATGCCATCGTGGTCAGTGTA+TGG 0.462828 3:+81967386 MsaT015043.1:CDS
CAACTAACTTTAACCAATTG+TGG 0.464405 3:-81966934 None:intergenic
AAATCCTACTTCAACTTCTC+GGG 0.466722 3:+81966442 MsaT015043.1:CDS
CGCCGGAGGAGGAGGAGGTG+AGG 0.467574 3:-81966513 None:intergenic
TGCCGGCACAAAGGCTGAAT+AGG 0.467684 3:-81968688 None:intergenic
TTCCTCACCTCCTCCTCCTC+CGG 0.470315 3:+81966511 MsaT015043.1:CDS
ATGGTCTCCATTCTAGTTCT+GGG 0.471044 3:-81970618 None:intergenic
TTCAACAATTATTAGATATG+TGG 0.471647 3:+81967776 MsaT015043.1:intron
GACATGGTCCACCACATGAC+CGG 0.472191 3:-81971321 None:intergenic
GCGGCGATTGTCCGCCGTGT+CGG 0.474082 3:+81967073 MsaT015043.1:CDS
CTCCTTGCCCAGAACTAGAA+TGG 0.479777 3:+81970611 MsaT015043.1:CDS
GCAGGAGAGAGCGCCGGAGG+AGG 0.480197 3:-81966524 None:intergenic
TGGGAAGGTGAAAGAGGAGA+GGG 0.483829 3:+81967122 MsaT015043.1:CDS
TTCTCCTGTGATAATTTATG+TGG 0.485112 3:+81970830 MsaT015043.1:CDS
TCAGGATTTGGGCATTCACC+AGG 0.485568 3:-81971551 None:intergenic
GCGCGTGACAGCGCGTGCGG+CGG 0.488341 3:-81966665 None:intergenic
ATGCTGCCGAAACATCTCTC+TGG 0.488397 3:+81966707 MsaT015043.1:CDS
GGAAGAGAACTTGTCCTTGT+GGG 0.490380 3:+81967262 MsaT015043.1:CDS
TCTCTTGATCCCTTGCAGAC+AGG 0.491222 3:-81971294 None:intergenic
AAGGAGGGCAGGCTCCATAA+TGG 0.491341 3:-81970199 None:intergenic
CAAGTTCTCTTCCCTTGTAA+AGG 0.493574 3:-81967252 None:intergenic
TGTGAAGGTGTCATGGTGCT+AGG 0.495800 3:+81970503 MsaT015043.1:intron
AACTTGTCCTTGTGGGAAAA+GGG 0.496194 3:+81967269 MsaT015043.1:CDS
GGGAAGCATGTTTGTGAGAA+AGG 0.498268 3:+81967201 MsaT015043.1:CDS
CAAACCTTAATTTGCATGCA+TGG 0.502920 3:-81970256 None:intergenic
ACACATTGGAGCAGAGAGAA+TGG 0.505357 3:+81970651 MsaT015043.1:CDS
GCGTTCGAGGCAGATGAGGC+AGG 0.506379 3:-81966542 None:intergenic
TGTAAGCGCCGCTGCTGTGA+TGG 0.506837 3:+81967624 MsaT015043.1:CDS
CATTCCTGTGGTGAAGTTTG+TGG 0.507840 3:+81966841 MsaT015043.1:CDS
GGAGGAGGAGGAGGTGAGGA+AGG 0.507907 3:-81966509 None:intergenic
TTTAATTAGCACCTTGCATG+GGG 0.509870 3:-81971215 None:intergenic
TCGGTTCTTCAAGGCATGGC+AGG 0.511717 3:-81970891 None:intergenic
GGGTGTCATTCTGGGGAGTG+TGG 0.512662 3:+81967222 MsaT015043.1:CDS
GTCCTATTCAGCCTTTGTGC+CGG 0.512706 3:+81968686 MsaT015043.1:CDS
TTAACCAATTGTGGACAAGA+TGG 0.516408 3:-81966925 None:intergenic
GTTTAATTAGCACCTTGCAT+GGG 0.516598 3:-81971216 None:intergenic
CATGGAAGATCGGTTCTTCA+AGG 0.518032 3:-81970900 None:intergenic
GATCTTGGAGAGGTCGGCGG+TGG 0.519117 3:-81966482 None:intergenic
AACCACTTACATCTTTCCTA+AGG 0.520379 3:-81967452 None:intergenic
AGTTCTGGGCAAGGAGGGCA+TGG 0.521473 3:-81970604 None:intergenic
CGGAAGGCTTGATGCGTTCG+AGG 0.521528 3:-81966555 None:intergenic
CATGTGGTGGACCATGTCAT+AGG 0.527236 3:+81971326 MsaT015043.1:CDS
GACTCTGATTCCGACGGCGG+AGG 0.527831 3:+81966367 MsaT015043.1:CDS
TCAAGCCTTCCGATCCAACT+TGG 0.528924 3:+81966566 MsaT015043.1:CDS
ACAATTATTAGATATGTGGC+AGG 0.529662 3:+81967780 MsaT015043.1:intron
TGTCATTCTGGGGAGTGTGG+TGG 0.529781 3:+81967225 MsaT015043.1:CDS
AGCTTTGAATACAGAAGAGA+TGG 0.531218 3:-81966618 None:intergenic
TCTCCAGGGTGGCAGCGCCG+AGG 0.531713 3:-81971187 None:intergenic
GAGGCAGGAGAGAGCGCCGG+AGG 0.532041 3:-81966527 None:intergenic
TCACAGCAGCGGCGCTTACA+CGG 0.532529 3:-81967621 None:intergenic
GAATATTGATTCGGATAGGT+CGG 0.533935 3:-81966419 None:intergenic
GGGCAGTGATGTTGACACTT+AGG 0.538317 3:-81971166 None:intergenic
CGGATAGGTCGGAGTGGCGG+AGG 0.538555 3:-81966408 None:intergenic
TCAATGTGGGAAGGTGAAAG+AGG 0.538792 3:+81967116 MsaT015043.1:CDS
CGGTGGTGGCATTGGTTGAG+TGG 0.542562 3:-81966465 None:intergenic
CACAGCAGCGGCGCTTACAC+GGG 0.542687 3:-81967620 None:intergenic
GAGGCGCGTGACAGCGCGTG+CGG 0.543021 3:-81966668 None:intergenic
ATTACAACAGCCTGTCTGCA+AGG 0.544969 3:+81971284 MsaT015043.1:CDS
GATGACATGTCTCTGGGCAT+AGG 0.547461 3:-81971529 None:intergenic
GTGGCGGAGGAGTGATGTGG+TGG 0.547771 3:-81966395 None:intergenic
AGAGTAAACTCGGGTTTAGG+AGG 0.549408 3:-81970529 None:intergenic
GATGAGGCAGGAGAGAGCGC+CGG 0.550248 3:-81966530 None:intergenic
CTCTTACAGTCAGAATTGCA+AGG 0.550515 3:-81971888 None:intergenic
TAAAACCCAAGGATCATCAC+TGG 0.551341 3:-81966815 None:intergenic
CACCAGGATGACATGTCTCT+GGG 0.551382 3:-81971535 None:intergenic
CTCCATTCTAGTTCTGGGCA+AGG 0.551799 3:-81970613 None:intergenic
ATGGAAGACGGCGAAGCAGA+GGG 0.552569 3:-81966599 None:intergenic
TGTCCGCCGTGTCGGGCGCG+TGG 0.553571 3:+81967081 MsaT015043.1:CDS
GGATTGGATCTTGGAGAGGT+CGG 0.553824 3:-81966488 None:intergenic
GTAAACTCGGGTTTAGGAGG+AGG 0.554960 3:-81970526 None:intergenic
CATTATAGGACAAGGAGCAC+AGG 0.557511 3:-81968210 None:intergenic
GATGGAAGACGGCGAAGCAG+AGG 0.557683 3:-81966600 None:intergenic
CATCAAGATGTACGTAGATG+TGG 0.558008 3:+81966970 MsaT015043.1:CDS
AGGTAGGCGACAAGGAGGGC+AGG 0.558099 3:-81970210 None:intergenic
GTGGGAAGGTGAAAGAGGAG+AGG 0.558404 3:+81967121 MsaT015043.1:CDS
GCGGAGGAGTGATGTGGTGG+AGG 0.559420 3:-81966392 None:intergenic
CCAATTTACCACAGAAACAA+AGG 0.559548 3:-81966783 None:intergenic
CAAGGGATCAAGAGACTGCC+CGG 0.559624 3:+81971302 MsaT015043.1:CDS
GTGGCCCGAGAAGTTGAAGT+AGG 0.559906 3:-81966446 None:intergenic
AAGCCTCACTTATCGGTGAC+TGG 0.560308 3:-81970925 None:intergenic
CAAGCAGCACATAATCGTGC+TGG 0.561180 3:+81971816 MsaT015043.1:CDS
CACACACCTCTGAGCACGGA+GGG 0.562156 3:-81967653 None:intergenic
TGTGGTGGATGTCCTTTACA+AGG 0.563073 3:+81967240 MsaT015043.1:CDS
GGCAATCTCCATCACAGCAG+CGG 0.563925 3:-81967632 None:intergenic
CAGCTAAGCTTCTTCTCACA+AGG 0.564167 3:-81967177 None:intergenic
CATGTCAAATCTTGATAGCA+AGG 0.564976 3:-81967558 None:intergenic
ATTTGCATGCATGGCCACAT+TGG 0.565894 3:-81970247 None:intergenic
ACATGGTCCACCACATGACC+GGG 0.566119 3:-81971320 None:intergenic
CAGGACCAAGTTGGATCGGA+AGG 0.567701 3:-81966571 None:intergenic
AGAGCGGGTAGTAGAATCGA+AGG 0.570295 3:+81972620 MsaT015043.1:CDS
TGCCCAGAGACATGTCATCC+TGG 0.570795 3:+81971533 MsaT015043.1:CDS
GGAAGCATGTTTGTGAGAAA+GGG 0.572028 3:+81967202 MsaT015043.1:CDS
CAAGAGACTGCCCGGTCATG+TGG 0.572886 3:+81971310 MsaT015043.1:CDS
AATAAATGCACTCAAAAGCA+TGG 0.572940 3:-81971264 None:intergenic
TTACAACAGCCTGTCTGCAA+GGG 0.575050 3:+81971285 MsaT015043.1:CDS
AGGGAGGTGCAGGACCAAGT+TGG 0.577510 3:-81966580 None:intergenic
GTGACAATTGCTTGTGCATG+TGG 0.577517 3:+81968233 MsaT015043.1:CDS
TAAACACCACGCGCCCGACA+CGG 0.579872 3:-81967087 None:intergenic
GAAGGAACCAACAATACTGC+AGG 0.581918 3:+81972638 MsaT015043.1:CDS
TCCGACTCTGATTCCGACGG+CGG 0.582715 3:+81966364 MsaT015043.1:CDS
CCAATGTGTTGCCCTACACA+TGG 0.582912 3:-81970637 None:intergenic
GTGGCAGGAGGCTTCGCTGT+AGG 0.584118 3:+81967795 MsaT015043.1:CDS
CCTTGGAGATTGATGCATGC+CGG 0.584274 3:-81968705 None:intergenic
GTGACTGGTTCATGGAAGAT+CGG 0.584405 3:-81970910 None:intergenic
ATTACCACATAAATTATCAC+AGG 0.584595 3:-81970834 None:intergenic
CACGCGCCTCTCTGTTTCTG+CGG 0.589585 3:+81966681 MsaT015043.1:CDS
TGAGAAAGGGTGTCATTCTG+GGG 0.589794 3:+81967215 MsaT015043.1:CDS
TGACTGTAAGAGTAAAGTGC+AGG 0.590925 3:+81971899 MsaT015043.1:CDS
ACATCTACGTACATCTTGAT+GGG 0.591442 3:-81966968 None:intergenic
TATTTAAATTACCTATGACA+TGG 0.592523 3:-81971337 None:intergenic
TAATGATTACCACATGGTAG+AGG 0.593541 3:-81970857 None:intergenic
TCGGAATCAGAGTCGGAAAG+TGG 0.593600 3:-81966358 None:intergenic
TGTGGGAAAAGGGTGTATGA+AGG 0.595816 3:+81967279 MsaT015043.1:CDS
TCGGAAAGTGGTTGTAGCAG+TGG 0.596059 3:-81966346 None:intergenic
TAGAATGGAGACCATGTGTA+GGG 0.596538 3:+81970626 MsaT015043.1:CDS
GGACAAGATGGACATGGCCC+AGG 0.596546 3:-81966913 None:intergenic
ATTGATGCATGCCGGCACAA+AGG 0.597180 3:-81968697 None:intergenic
ATTTGAATATTGATTCGGAT+AGG 0.597203 3:-81966423 None:intergenic
TAATTAGCACCTTGCATGGG+GGG 0.598110 3:-81971213 None:intergenic
TGATGCGTTCGAGGCAGATG+AGG 0.599305 3:-81966546 None:intergenic
AATGCCAATCTCCATGCCAT+AGG 0.600144 3:+81967825 MsaT015043.1:CDS
GGAGTGGCGGAGGAGTGATG+TGG 0.600646 3:-81966398 None:intergenic
ACGGCGGACAATCGCCGCGG+TGG 0.602975 3:-81967068 None:intergenic
ACACCACGCGCCCGACACGG+CGG 0.603709 3:-81967084 None:intergenic
GGTGCAGGACCAAGTTGGAT+CGG 0.605233 3:-81966575 None:intergenic
AAAACAACATACCTATGGCA+TGG 0.606167 3:-81967836 None:intergenic
AGTGTCAACATCACTGCCCT+CGG 0.606905 3:+81971170 MsaT015043.1:CDS
CAAGCACACACCTCTGAGCA+CGG 0.608095 3:-81967657 None:intergenic
ATCAAGATGTACGTAGATGT+GGG 0.611750 3:+81966971 MsaT015043.1:CDS
GGTACTCTTCTGCACAAGGT+AGG 0.612206 3:-81970226 None:intergenic
GACAATTGCTTGTGCATGTG+GGG 0.614013 3:+81968235 MsaT015043.1:CDS
TTGGATCTTGGAGAGGTCGG+CGG 0.614724 3:-81966485 None:intergenic
GGGAAGAGAACTTGTCCTTG+TGG 0.614874 3:+81967261 MsaT015043.1:CDS
ACCTGCAAAGGAGCATCACA+AGG 0.615656 3:-81967306 None:intergenic
CATTCTAGTTCTGGGCAAGG+AGG 0.616059 3:-81970610 None:intergenic
ATTCTAGTTCTGGGCAAGGA+GGG 0.616871 3:-81970609 None:intergenic
CCATGTGTAGGGCAACACAT+TGG 0.618263 3:+81970637 MsaT015043.1:CDS
TGCCAGACATTGCGCGACTG+TGG 0.619432 3:+81967591 MsaT015043.1:CDS
TCTACCACAAACTTCACCAC+AGG 0.620089 3:-81966845 None:intergenic
GAGACTGCCCGGTCATGTGG+TGG 0.620613 3:+81971313 MsaT015043.1:CDS
GGTGGAGGAACCTCCGCCGT+CGG 0.622206 3:-81966377 None:intergenic
CATTGGTACTCTTCTGCACA+AGG 0.622316 3:-81970230 None:intergenic
GTGGTTGTAGCAGTGGCGGA+TGG 0.624993 3:-81966339 None:intergenic
GTTGCACCACAAACCTGCAA+AGG 0.625605 3:-81967318 None:intergenic
CTAGAATGGAGACCATGTGT+AGG 0.625854 3:+81970625 MsaT015043.1:CDS
CATTGTTTACGACATTTAGG+TGG 0.626618 3:-81968664 None:intergenic
GAAAGTGGTTGTAGCAGTGG+CGG 0.627995 3:-81966343 None:intergenic
TGTGAGAAGAAGCTTAGCTG+TGG 0.629144 3:+81967180 MsaT015043.1:CDS
GTCATGTCATTGTGGTGCAA+TGG 0.629718 3:+81971240 MsaT015043.1:CDS
CCGGCATGCATCAATCTCCA+AGG 0.630303 3:+81968705 MsaT015043.1:CDS
GTGAGAAAACGTTGCCGTGT+GGG 0.631569 3:+81967343 MsaT015043.1:CDS
ATTATTAGATATGTGGCAGG+AGG 0.631576 3:+81967783 MsaT015043.1:intron
AATACAGAAGAGATGGAAGA+CGG 0.633269 3:-81966611 None:intergenic
TGACAATTGCTTGTGCATGT+GGG 0.635013 3:+81968234 MsaT015043.1:CDS
TCTGCACAAGGTAGGCGACA+AGG 0.635231 3:-81970218 None:intergenic
GTTGTAGCAGTGGCGGATGG+TGG 0.638018 3:-81966336 None:intergenic
ATTATAGGACAAGGAGCACA+GGG 0.640941 3:-81968209 None:intergenic
ATCAAGATTTGACATGTGAG+AGG 0.642620 3:+81967565 MsaT015043.1:CDS
CACAAGGTAGGCGACAAGGA+GGG 0.645664 3:-81970214 None:intergenic
CAGGAATGTGGTAAAACCCA+AGG 0.646619 3:-81966826 None:intergenic
ATTAAACGGTCATGTCATTG+TGG 0.647603 3:+81971232 MsaT015043.1:CDS
CAAACTTCACCACAGGAATG+TGG 0.647797 3:-81966838 None:intergenic
GTGAGAAGAAGCTTAGCTGT+GGG 0.648293 3:+81967181 MsaT015043.1:CDS
AAGATCGGTTCTTCAAGGCA+TGG 0.650910 3:-81970895 None:intergenic
TGATCCATTTCTGTACCACA+AGG 0.651398 3:-81968637 None:intergenic
TCCGCCGTCGGAATCAGAGT+CGG 0.653889 3:-81966365 None:intergenic
TTTGGTTTGAGAGTAAACTC+GGG 0.658146 3:-81970538 None:intergenic
AAAACCCAAGGATCATCACT+GGG 0.661848 3:-81966814 None:intergenic
GAAGACGGCGAAGCAGAGGG+AGG 0.663441 3:-81966596 None:intergenic
GAACCAGTCACCGATAAGTG+AGG 0.665124 3:+81970922 MsaT015043.1:CDS
CATGTTCCGCAGAAACAGAG+AGG 0.670064 3:-81966687 None:intergenic
AGATTGCCCTCCGTGCTCAG+AGG 0.672613 3:+81967647 MsaT015043.1:CDS
GGAAGGATTGGATCTTGGAG+AGG 0.672656 3:-81966492 None:intergenic
ATTGTCACCATTATAGGACA+AGG 0.673079 3:-81968218 None:intergenic
AAGTCGATGAACAAAGACAA+AGG 0.674025 3:+81972867 MsaT015043.1:CDS
GCTCCATAATGGCATTTGTG+AGG 0.676050 3:-81970188 None:intergenic
ACGTAAATCTAAAGTTACAG+AGG 0.680380 3:+81971944 MsaT015043.1:CDS
GCACAAGGTAGGCGACAAGG+AGG 0.680879 3:-81970215 None:intergenic
AATTGTGGACAAGATGGACA+TGG 0.687815 3:-81966919 None:intergenic
TTAATTAGCACCTTGCATGG+GGG 0.690087 3:-81971214 None:intergenic
GTGTTTATAGGTGTCAATGT+GGG 0.691064 3:+81967103 MsaT015043.1:CDS
CTTTCCGACTCTGATTCCGA+CGG 0.693353 3:+81966361 MsaT015043.1:CDS
ATTCGGATAGGTCGGAGTGG+CGG 0.694321 3:-81966411 None:intergenic
GCACACACCTCTGAGCACGG+AGG 0.695729 3:-81967654 None:intergenic
TTATAGGTGTCAATGTGGGA+AGG 0.698276 3:+81967107 MsaT015043.1:CDS
GTGGTGGATGTCCTTTACAA+GGG 0.698689 3:+81967241 MsaT015043.1:CDS
GGTGTTTATAGGTGTCAATG+TGG 0.704739 3:+81967102 MsaT015043.1:CDS
GACACGGCGGACAATCGCCG+CGG 0.707461 3:-81967071 None:intergenic
ACCCAAGGATCATCACTGGG+TGG 0.707563 3:-81966811 None:intergenic
TGTGGTAATCCTCTACCATG+TGG 0.708980 3:+81970848 MsaT015043.1:CDS
TGTCATGAACGATGCCATCG+TGG 0.709691 3:+81967375 MsaT015043.1:CDS
TGTGAGAAAACGTTGCCGTG+TGG 0.715124 3:+81967342 MsaT015043.1:CDS
TTGATTCGGATAGGTCGGAG+TGG 0.721255 3:-81966414 None:intergenic
GTGAAGAAAAGTTGTCGTTG+TGG 0.723017 3:+81967426 MsaT015043.1:CDS
GTACAATAATGATTACCACA+TGG 0.732071 3:-81970863 None:intergenic
TCTCCATACACTGACCACGA+TGG 0.732766 3:-81967389 None:intergenic
TGACACCTATGATACCCACA+CGG 0.751810 3:-81967357 None:intergenic
TGTGTTGAGATTTGCCACCG+CGG 0.753202 3:+81967054 MsaT015043.1:CDS
TGTGCAGAAGAGTACCAATG+TGG 0.757294 3:+81970233 MsaT015043.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 81966319 81972907 81966319 ID=MsaG015043
Chr3 mRNA 81966319 81972907 81966319 ID=MsaT015043.1;Parent=MsaG015043
Chr3 exon 81966319 81967464 81966319 ID=MsaT015043.1.exon1;Parent=MsaT015043.1
Chr3 CDS 81966319 81967464 81966319 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81967555 81967668 81967555 ID=MsaT015043.1.exon2;Parent=MsaT015043.1
Chr3 CDS 81967555 81967668 81967555 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81967791 81967846 81967791 ID=MsaT015043.1.exon3;Parent=MsaT015043.1
Chr3 CDS 81967791 81967846 81967791 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81968205 81968271 81968205 ID=MsaT015043.1.exon4;Parent=MsaT015043.1
Chr3 CDS 81968205 81968271 81968205 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81968634 81968726 81968634 ID=MsaT015043.1.exon5;Parent=MsaT015043.1
Chr3 CDS 81968634 81968726 81968634 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81970188 81970273 81970188 ID=MsaT015043.1.exon6;Parent=MsaT015043.1
Chr3 CDS 81970188 81970273 81970188 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81970510 81970672 81970510 ID=MsaT015043.1.exon7;Parent=MsaT015043.1
Chr3 CDS 81970510 81970672 81970510 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81970806 81970976 81970806 ID=MsaT015043.1.exon8;Parent=MsaT015043.1
Chr3 CDS 81970806 81970976 81970806 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81971157 81971347 81971157 ID=MsaT015043.1.exon9;Parent=MsaT015043.1
Chr3 CDS 81971157 81971347 81971157 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81971508 81971589 81971508 ID=MsaT015043.1.exon10;Parent=MsaT015043.1
Chr3 CDS 81971508 81971589 81971508 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81971759 81971965 81971759 ID=MsaT015043.1.exon11;Parent=MsaT015043.1
Chr3 CDS 81971759 81971965 81971759 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81972567 81972659 81972567 ID=MsaT015043.1.exon12;Parent=MsaT015043.1
Chr3 CDS 81972567 81972659 81972567 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Chr3 exon 81972752 81972907 81972752 ID=MsaT015043.1.exon13;Parent=MsaT015043.1
Chr3 CDS 81972752 81972907 81972752 ID=cds.MsaT015043.1;Parent=MsaT015043.1
Gene Sequence

>MsaT015043.1

ATGGCGTCATCACATAACCACCATCCGCCACTGCTACAACCACTTTCCGACTCTGATTCCGACGGCGGAGGTTCCTCCACCACATCACTCCTCCGCCACTCCGACCTATCCGAATCAATATTCAAATCCTACTTCAACTTCTCGGGCCACTCAACCAATGCCACCACCGCCGACCTCTCCAAGATCCAATCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTCTCCTGCCTCATCTGCCTCGAACGCATCAAGCCTTCCGATCCAACTTGGTCCTGCACCTCCCTCTGCTTCGCCGTCTTCCATCTCTTCTGTATTCAAAGCTGGTCTCGTCAAGCTTCTGATCTCGCCGCCGCACGCGCTGTCACGCGCCTCTCTGTTTCTGCGGAACATGCTGCCGAAACATCTCTCTGGAATTGTCCTAAATGTAGAGTTGAATATCCCAAAAGTTTAATCCCAAAAATTTACCTTTGTTTCTGTGGTAAATTGGAGAATCCACCCAGTGATGATCCTTGGGTTTTACCACATTCCTGTGGTGAAGTTTGTGGTAGATCGTTGAAAAATGATTGTGGGCATCATTGTTTGCTTCTTTGTCATCCTGGGCCATGTCCATCTTGTCCACAATTGGTTAAAGTTAGTTGCTTTTGTGGGTCCCATCAAGATGTACGTAGATGTGGGTTCAAAGAGTTTTCTTGTGAAGCACGTTGTGAGAAAAAATTGGATTGTGGTGTTCATAGATGTGTTGAGATTTGCCACCGCGGCGATTGTCCGCCGTGTCGGGCGCGTGGTGTTTATAGGTGTCAATGTGGGAAGGTGAAAGAGGAGAGGGAGTGTTGTGAACGTGTTTTTCAATGTGGTGATCCTTGTGAGAAGAAGCTTAGCTGTGGGAAGCATGTTTGTGAGAAAGGGTGTCATTCTGGGGAGTGTGGTGGATGTCCTTTACAAGGGAAGAGAACTTGTCCTTGTGGGAAAAGGGTGTATGAAGGAATGCCTTGTGATGCTCCTTTGCAGGTTTGTGGTGCAACTTGTGAGAAAACGTTGCCGTGTGGGTATCATAGGTGTCATGAACGATGCCATCGTGGTCAGTGTATGGAGACTTGTAGGATTGTTGTGAAGAAAAGTTGTCGTTGTGGAAGCCTTAGGAAAGATGTGCCTTGCTATCAAGATTTGACATGTGAGAGGAAGTGCCAGACATTGCGCGACTGTGGTAAGCACCCGTGTAAGCGCCGCTGCTGTGATGGAGATTGCCCTCCGTGCTCAGAGATATGTGGCAGGAGGCTTCGCTGTAGGAACCATAAATGCCAATCTCCATGCCATAGAGGTCCCTGTGCTCCTTGTCCTATAATGGTGACAATTGCTTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACAGAAATGGATCAAAAGCCACCTAAATGTCGTAAACAATGTCCTATTCAGCCTTTGTGCCGGCATGCATCAATCTCCAAGCCTCACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGCCTACCTTGTGCAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGGTGTCATGGTGCTAGGCCTCCTCCTAAACCCGAGTTTACTCTCAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAAGTGTTCCCGGCACTCCATGCCCTCCTTGCCCAGAACTAGAATGGAGACCATGTGTAGGGCAACACATTGGAGCAGAGAGAATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGATAATTTATGTGGTAATCCTCTACCATGTGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGAAGAACCGATCTTCCATGAACCAGTCACCGATAAGTGAGGCTTGTGAAGCTTGTTCGCTTTTTTGCCAAAAGGAACGAAAGCCTAAGTGTCAACATCACTGCCCTCGGCGCTGCCACCCTGGAGACTGCCCCCCATGCAAGGTGCTAATTAAACGGTCATGTCATTGTGGTGCAATGGTCCATGCTTTTGAGTGCATTTATTACAACAGCCTGTCTGCAAGGGATCAAGAGACTGCCCGGTCATGTGGTGGACCATGTCATAGAAAGATGCCAAATTGTACACACCTATGCCCAGAGACATGTCATCCTGGTGAATGCCCAAATCCTGAGAAATGCTCTAAAAAGGTCACTGCTCGTTGCAAATGCCAAACGCTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGTGCTGGTTGCAATCCAAGCGATGTACCAAAAAATCAATTTGGGGTTGGACTTATTCCTTGCAATTCTGACTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAATTGCAATTACGTAAATCTAAAGTTACAGAGGTGAAGGAGCAGCGAGATAATGAAAAATCAGGTCCAAAGCGACGAAAAAAGCGAGAGCGGGTAGTAGAATCGAAGGAACCAACAATACTGCAGAAAATTATTTCCAGAGCAAAGCAGCTTCTTCTATTTATATTTTTCTTGGTCATACTTGTTGCTGCTACTCATTTTGGGTACAAGGGACTACTATGGCTCAATGATTGGATGAATAAAGTCGATGAACAAAGACAAAGGTCTTCACGAATCAGATGA

Protein sequence

>MsaT015043.1

MASSHNHHPPLLQPLSDSDSDGGGSSTTSLLRHSDLSESIFKSYFNFSGHSTNATTADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAAARAVTRLSVSAEHAAETSLWNCPKCRVEYPKSLIPKIYLCFCGKLENPPSDDPWVLPHSCGEVCGRSLKNDCGHHCLLLCHPGPCPSCPQLVKVSCFCGSHQDVRRCGFKEFSCEARCEKKLDCGVHRCVEICHRGDCPPCRARGVYRCQCGKVKEERECCERVFQCGDPCEKKLSCGKHVCEKGCHSGECGGCPLQGKRTCPCGKRVYEGMPCDAPLQVCGATCEKTLPCGYHRCHERCHRGQCMETCRIVVKKSCRCGSLRKDVPCYQDLTCERKCQTLRDCGKHPCKRRCCDGDCPPCSEICGRRLRCRNHKCQSPCHRGPCAPCPIMVTIACACGETHFEVPCGTEMDQKPPKCRKQCPIQPLCRHASISKPHKCHYGACPPCRLPCAEEYQCGHACKLRCHGARPPPKPEFTLKPKKKKIIQQSESVPGTPCPPCPELEWRPCVGQHIGAERMMVCSNKSQFSCDNLCGNPLPCGNHYCTKTCHALKNRSSMNQSPISEACEACSLFCQKERKPKCQHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNSLSARDQETARSCGGPCHRKMPNCTHLCPETCHPGECPNPEKCSKKVTARCKCQTLKKEWLCQDVQAAHNRAGCNPSDVPKNQFGVGLIPCNSDCKSKVQVVESELQLRKSKVTEVKEQRDNEKSGPKRRKKRERVVESKEPTILQKIISRAKQLLLFIFFLVILVAATHFGYKGLLWLNDWMNKVDEQRQRSSRIR*