AlfalfaGEDB | MsaG015055

M. sativa ssp. caerulea / MsaG015055

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015055	XP_003600927.2	99.618	262	1	0	1	262	1	262	0.0	536

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015055	sp\|Q9XEF0\|BH051_ARATH	44.245	278	108	10	3	261	1	250	2.43e-53	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015055	tr\|G7JBT8\|G7JBT8_MEDTR	99.618	262	1	0	1	262	1	262	0.0	536

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015055	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015055	MtrunA17_Chr3g0113721	86.260	262	2	1	1	262	1	228	5.53e-160	443
MsaG015055	MtrunA17_Chr1g0198801	45.503	189	94	3	66	254	151	330	1.99e-43	150
MsaG015055	MtrunA17_Chr7g0255961	34.661	251	140	6	7	254	13	242	5.28e-41	141
MsaG015055	MtrunA17_Chr4g0041051	35.533	197	106	4	65	254	60	242	3.77e-24	97.4
MsaG015055	MtrunA17_Chr5g0412371	37.059	170	84	4	73	236	45	197	3.88e-24	96.3
MsaG015055	MtrunA17_Chr4g0045901	33.668	199	112	6	67	255	69	257	3.97e-23	95.1
MsaG015055	MtrunA17_Chr2g0325521	34.054	185	105	4	63	240	49	223	4.31e-23	94.7
MsaG015055	MtrunA17_Chr5g0427361	29.596	223	107	5	51	234	7	218	1.81e-16	76.6
MsaG015055	MtrunA17_Chr2g0283714	43.182	88	37	2	105	192	16	90	1.93e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015055	AT2G40200.1	44.245	278	108	10	3	261	1	250	2.47e-54	176
MsaG015055	AT1G68810.1	41.538	195	98	4	66	255	167	350	3.87e-36	132
MsaG015055	AT3G56770.1	36.757	185	105	4	61	243	33	207	5.67e-34	123
MsaG015055	AT3G25710.1	46.405	153	70	2	69	220	128	269	6.78e-34	125
MsaG015055	AT2G41130.1	34.973	183	106	4	63	242	57	229	2.82e-25	100
MsaG015055	AT4G38070.1	33.108	148	82	3	73	220	92	222	1.53e-18	82.8

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Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCGACATAGCAAGTGT+TGG	0.637609	3:+82152227	MsaT015055.1:CDS
AATATAGTGAATTTCAGTCA+TGG	0.537343	3:+82150904	MsaT015055.1:CDS
AATATCTCTGACTCTTCTTC+TGG	0.300411	3:+82150873	MsaT015055.1:CDS
AATTACTATACAAAATGAGA+AGG	0.613826	3:-82152413	None:intergenic
ACTACAATGATTCTTCTGAG+TGG	0.704840	3:+82150766	MsaT015055.1:CDS
ACTTATTCCTAAGTCTGATA+AGG	0.480745	3:+82151043	MsaT015055.1:CDS
AGATCTAAAGCGAAAAGCAA+TGG	0.560117	3:+82151998	MsaT015055.1:CDS
ATCTGTGTAGGTACAGTCAC+AGG	0.552887	3:-82150840	None:intergenic
ATGGACAAAGCAGCATTACT+AGG	0.419485	3:+82151954	MsaT015055.1:CDS
ATTAGTTCAGAGAACAATTC+TGG	0.307068	3:-82152170	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	82150753	82152430	82150753	ID=MsaG015055
Chr3	mRNA	82150753	82152430	82150753	ID=MsaT015055.1;Parent=MsaG015055
Chr3	exon	82150753	82151064	82150753	ID=MsaT015055.1.exon1;Parent=MsaT015055.1
Chr3	CDS	82150753	82151064	82150753	ID=cds.MsaT015055.1;Parent=MsaT015055.1
Chr3	exon	82151954	82152430	82151954	ID=MsaT015055.1.exon2;Parent=MsaT015055.1
Chr3	CDS	82151954	82152430	82151954	ID=cds.MsaT015055.1;Parent=MsaT015055.1

Gene Sequence

>MsaT015055.1

ATGAGTATGGAAAACTACAATGATTCTTCTGAGTGGCAGCATTTGAGCACAAACTGGTCTCAATACAGTAATGATCATTCACAATTTCCTGTGACTGTACCTACACAGATACTACCTCATAATATCTCTGACTCTTCTTCTGGTTCTTTTCAATATAGTGAATTTCAGTCATGGAATTTACCTATTGAAGGGAGTGTTGAAGATAGGGCAGCAAGTGCTTCCAAGAGTCATAGTCAAGCAGAGAAAAGACGTAGAGACAGGATTAATACACAGCTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGATAGATCAAGTCAAAGATCTAAAGCGAAAAGCAATGGATGTTAGCAGAGTCATCACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTATAACCATGTTGTTGAAGATGAAACCAACACTAACAAAGTGAACAAATTCAAAGACAATATCATCATCAAAGCTTCTGTTTGTTGCGACGATCGACCAGAATTGTTCTCTGAACTAATCCAAGTCCTCAAAGGTTTAAGACTTACAACAGTTAAAGCCGACATAGCAAGTGTTGGTGGCAGAATCAAAAGTATATTGGTGCTTTGTTCTAAGGACAGTGAAGAAAATGTTTGCATTAATACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACAAGAAGTAAGAGGCAGAGATTCTTTTTGCCTTCTCATTTTGTATAG

Protein sequence

>MsaT015055.1

MSMENYNDSSEWQHLSTNWSQYSNDHSQFPVTVPTQILPHNISDSSSGSFQYSEFQSWNLPIEGSVEDRAASASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVVEDETNTNKVNKFKDNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV*