AlfalfaGEDB | MsaG015066

M. sativa ssp. caerulea / MsaG015066

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015066	XP_003600955.1	97.297	185	5	0	1	185	1	185	1.78e-132	379

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015066	sp\|Q9SRL8\|LBD21_ARATH	78.378	111	24	0	4	114	1	111	4.49e-61	190

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015066	tr\|G7JBW6\|G7JBW6_MEDTR	97.297	185	5	0	1	185	1	185	8.52e-133	379

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015066	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015066	MtrunA17_Chr3g0113891	97.297	185	5	0	1	185	1	185	1.64e-136	379
MsaG015066	MtrunA17_Chr5g0437401	73.077	182	44	1	4	185	1	177	1.32e-89	259
MsaG015066	MtrunA17_Chr7g0227511	64.151	106	38	0	11	116	8	113	5.55e-46	149
MsaG015066	MtrunA17_Chr6g0449641	65.094	106	37	0	11	116	6	111	1.73e-45	147
MsaG015066	MtrunA17_Chr5g0437571	64.078	103	37	0	12	114	4	106	5.03e-44	144
MsaG015066	MtrunA17_Chr3g0106101	52.000	125	59	1	12	136	5	128	2.31e-43	142
MsaG015066	MtrunA17_Chr3g0114061	62.500	104	39	0	11	114	5	108	2.83e-43	141
MsaG015066	MtrunA17_Chr4g0058651	45.087	173	72	4	12	184	9	158	2.93e-43	142
MsaG015066	MtrunA17_Chr4g0043421	46.667	150	77	1	11	160	12	158	4.78e-43	141
MsaG015066	MtrunA17_Chr3g0117121	61.905	105	40	0	12	116	8	112	6.31e-43	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015066	AT3G11090.1	78.378	111	24	0	4	114	1	111	4.57e-62	190
MsaG015066	AT3G27650.1	64.151	106	38	0	11	116	36	141	2.14e-44	145
MsaG015066	AT5G66870.1	62.857	105	39	0	11	115	4	108	6.85e-43	145
MsaG015066	AT5G63090.4	52.239	134	60	1	12	145	9	138	1.14e-42	141
MsaG015066	AT5G63090.3	52.239	134	60	1	12	145	9	138	1.14e-42	141
MsaG015066	AT5G63090.2	52.239	134	60	1	12	145	9	138	1.14e-42	141
MsaG015066	AT5G63090.1	52.239	134	60	1	12	145	9	138	1.14e-42	141
MsaG015066	AT2G23660.2	60.577	104	41	0	11	114	2	105	1.54e-41	142
MsaG015066	AT2G23660.3	60.577	104	41	0	11	114	2	105	1.54e-41	142
MsaG015066	AT2G23660.1	60.577	104	41	0	11	114	2	105	1.54e-41	142

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Find 27 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAATGCATCCATAAACT+GGG	0.613188	3:+82292020	None:intergenic
AAGTGAAATGAAAGGCATAA+AGG	0.382977	3:-82292278	None:intergenic
AATTACAGAAGGAGTTGTTG+TGG	0.575137	3:+82291889	None:intergenic
ACATGATTTGGCCATTGCTA+AGG	0.501000	3:-82291960	MsaT015066.1:CDS
AGAGGGGATCAAAATGTATA+AGG	0.366846	3:+82291728	None:intergenic
AGCAAGACGTTCCTTAGCAA+TGG	0.581078	3:+82291949	None:intergenic
AGGCTTAAAGACCCAGTTTA+TGG	0.242004	3:-82292031	MsaT015066.1:CDS
AGTGAAATGAAAGGCATAAA+GGG	0.450119	3:-82292277	None:intergenic
ATCATTGAGATCGTTAGAAG+TGG	0.559617	3:+82291820	None:intergenic
ATTTCTTGCACTCGTTAGAA+TGG	0.427400	3:+82292167	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	82291736	82292293	82291736	ID=MsaG015066
Chr3	mRNA	82291736	82292293	82291736	ID=MsaT015066.1;Parent=MsaG015066
Chr3	exon	82291736	82292293	82291736	ID=MsaT015066.1.exon1;Parent=MsaT015066.1
Chr3	CDS	82291736	82292293	82291736	ID=cds.MsaT015066.1;Parent=MsaT015066.1

Gene Sequence

>MsaT015066.1

ATGAAAGGCATAAAGGGTTATGAGCCACGTTCAAGCTCATCTTGTGCAGCTTGCAAATTATTGAAAAGAAGATGCACACCAGATTGCTTATTTGCACCTTACTTCCATTCTAACGAGTGCAAGAAATTTGCTAAAGTTCACAAAGTATTTGGAGCAAGCAATGTTAGCAAGATACTCATTGAAGTACCAGAAAAACAAAGAGAAGATACAGTGAATTCTCTTGCTTATGAAGCAGAAGCAAGGCTTAAAGACCCAGTTTATGGATGCATTGGTTCCATAGCTATGTTGCAAAGGAAGATGATGGAACTTCAACATGATTTGGCCATTGCTAAGGAACGTCTTGCTCGCTGTCGCGCTGTTGCTGCAGCTGCTACAATCACAACCACAACAACTCCTTCTGTAATTGATAGTTTGCATTCTGATGTTACTTTGCCTCCATTTCCTGAGTTTTCCACTTCTAACGATCTCAATGATATCTTTTGTCATGGCTCTTCTTCGCAATTTTTGGGTCGAAATGAAACAATGGATGATTTCAATCAAATTCCTTATACATTTTGA

Protein sequence

>MsaT015066.1

MKGIKGYEPRSSSSCAACKLLKRRCTPDCLFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLKDPVYGCIGSIAMLQRKMMELQHDLAIAKERLARCRAVAAAATITTTTTPSVIDSLHSDVTLPPFPEFSTSNDLNDIFCHGSSSQFLGRNETMDDFNQIPYTF*