AlfalfaGEDB | MsaG015081

M. sativa ssp. caerulea / MsaG015081

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015081	XP_003600972.1	99.371	159	1	0	1	159	1	159	6.22e-114	329

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015081	sp\|Q8LBW3\|LBD12_ARATH	77.698	139	25	2	1	135	1	137	5.07e-72	218

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015081	tr\|G7J2B8\|G7J2B8_MEDTR	99.371	159	1	0	1	159	1	159	2.97e-114	329

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015081	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000309	MsaG015081	0.865492	1.136368e-64	1.094925e-61
MsaG000382	MsaG015081	0.837603	8.652014e-57	3.134741e-54
MsaG000578	MsaG015081	0.819643	1.825114e-52	3.976071e-50
MsaG000880	MsaG015081	0.802925	7.485250e-49	1.081561e-46
MsaG001001	MsaG015081	0.843408	2.663590e-58	1.158792e-55
MsaG001086	MsaG015081	0.811660	1.074872e-50	1.911591e-48
MsaG001087	MsaG015081	0.816513	9.236521e-52	1.855419e-49
MsaG001278	MsaG015081	0.812496	7.080086e-51	1.285424e-48
MsaG001366	MsaG015081	0.829867	7.271787e-55	2.096573e-52
MsaG002458	MsaG015081	0.822278	4.546133e-53	1.062146e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015081	MtrunA17_Chr3g0114061	99.371	159	1	0	1	159	1	159	5.72e-118	329
MsaG015081	MtrunA17_Chr5g0437571	75.155	161	31	4	1	156	1	157	3.84e-81	237
MsaG015081	MtrunA17_Chr3g0106101	65.359	153	40	2	3	142	2	154	3.12e-69	207
MsaG015081	MtrunA17_Chr2g0311601	76.364	110	26	0	4	113	9	118	6.04e-59	180
MsaG015081	MtrunA17_Chr4g0043421	70.339	118	31	1	2	115	5	122	1.51e-56	175
MsaG015081	MtrunA17_Chr4g0030001	65.179	112	38	1	7	117	23	134	5.39e-50	159
MsaG015081	MtrunA17_Chr1g0200201	71.287	101	29	0	9	109	73	173	8.78e-49	157
MsaG015081	MtrunA17_Chr5g0438091	52.795	161	67	3	4	158	35	192	1.59e-48	155
MsaG015081	MtrunA17_Chr3g0129071	63.393	112	41	0	4	115	43	154	2.99e-47	153
MsaG015081	MtrunA17_Chr7g0227511	59.829	117	43	1	5	117	8	124	1.90e-46	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015081	AT2G30130.1	77.698	139	25	2	1	135	1	137	5.16e-73	218
MsaG015081	AT1G16530.1	67.544	114	36	1	3	115	9	122	2.69e-52	164
MsaG015081	AT1G07900.1	64.865	111	39	0	7	117	32	142	1.63e-50	160
MsaG015081	AT2G28500.1	65.138	109	38	0	7	115	54	162	6.65e-50	160
MsaG015081	AT1G31320.1	71.171	111	32	0	4	114	9	119	9.64e-50	157
MsaG015081	AT2G30340.1	64.151	106	38	0	4	109	48	153	2.34e-46	152
MsaG015081	AT2G30340.2	64.151	106	38	0	4	109	49	154	2.59e-46	152
MsaG015081	AT3G27650.1	62.385	109	41	0	1	109	32	140	4.04e-46	148
MsaG015081	AT5G63090.4	66.990	103	34	0	6	108	9	111	5.89e-46	149
MsaG015081	AT5G63090.3	66.990	103	34	0	6	108	9	111	5.89e-46	149

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Find 20 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGCAATTGTTCACA+AGG	0.564865	3:+82450045	MsaT015081.1:CDS
AGAGTGAAAGACCCTGTTTA+TGG	0.387679	3:+82450624	MsaT015081.1:CDS
AGATACAATCCTTAGCACAA+CGG	0.718268	3:-82449991	None:intergenic
AGGAGTTTGCATGAAGCACA+AGG	0.592427	3:-82449962	None:intergenic
ATCATAAGATTTATGATCAA+GGG	0.554510	3:-82450781	None:intergenic
CAACGTTAGCAAAATGCTCC+AGG	0.569502	3:+82450081	MsaT015081.1:CDS
CCTTAGACGCCGTTGTGCTA+AGG	0.517412	3:+82449982	MsaT015081.1:CDS
CCTTAGCACAACGGCGTCTA+AGG	0.285930	3:-82449982	None:intergenic
CTCCAACACAACCATAAACA+GGG	0.640494	3:-82450635	None:intergenic
GAAGGAAAGTTGAAATACTG+AGG	0.552181	3:-82450807	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	82449941	82450881	82449941	ID=MsaG015081
Chr3	mRNA	82449941	82450881	82449941	ID=MsaT015081.1;Parent=MsaG015081
Chr3	exon	82449941	82450102	82449941	ID=MsaT015081.1.exon1;Parent=MsaT015081.1
Chr3	CDS	82449941	82450102	82449941	ID=cds.MsaT015081.1;Parent=MsaT015081.1
Chr3	exon	82450564	82450881	82450564	ID=MsaT015081.1.exon2;Parent=MsaT015081.1
Chr3	CDS	82450564	82450881	82450564	ID=cds.MsaT015081.1;Parent=MsaT015081.1

Gene Sequence

>MsaT015081.1

ATGGGTGGTAATACTACTTCCCCTTGTGCTTCATGCAAACTCCTTAGACGCCGTTGTGCTAAGGATTGTATCTTTGCTCCTTATTTCCCTTCACATGATCCTAAAAAATTTGCAATTGTTCACAAGGTTTTTGGTGCCAGCAACGTTAGCAAAATGCTCCAGGAACTTCCTATTCAACAAAGAGCTGATGCAGTAAGCAGTTTAGTATATGAAGCGAATGCAAGAGTGAAAGACCCTGTTTATGGTTGTGTTGGAGCAATATCATACCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCACAAGCAGAAATACTTTGCATCCAGATGAAACATGATGATCAACCTCTAATGCAAAATCAAGAAATAGCCCTTGATCATAAATCTTATGATCTTCCTCAGTATTTCAACTTTCCTTCTTCAAGCAATGTAATTCATCATGATTCTTTCTCAAGAGAGAGAATTTTTTGA

Protein sequence

>MsaT015081.1

MGGNTTSPCASCKLLRRRCAKDCIFAPYFPSHDPKKFAIVHKVFGASNVSKMLQELPIQQRADAVSSLVYEANARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMKHDDQPLMQNQEIALDHKSYDLPQYFNFPSSSNVIHHDSFSRERIF*