AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG015143


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015143 MtrunA17_Chr3g0114841 97.250 509 9 3 1 505 1 508 0.0 1012
MsaG015143 MtrunA17_Chr5g0424131 62.083 509 155 14 12 505 23 508 0.0 577
MsaG015143 MtrunA17_Chr8g0383981 38.191 398 208 12 116 504 136 504 1.20e-66 223
MsaG015143 MtrunA17_Chr7g0224271 33.400 497 276 16 23 497 211 674 3.55e-65 223
MsaG015143 MtrunA17_Chr4g0038761 38.172 372 201 13 133 498 96 444 4.59e-52 183
MsaG015143 MtrunA17_Chr7g0245601 37.203 379 201 16 124 495 443 791 1.21e-51 187
MsaG015143 MtrunA17_Chr3g0110971 31.236 445 250 13 76 495 173 586 2.17e-51 184
MsaG015143 MtrunA17_Chr2g0306641 33.092 414 243 12 100 504 107 495 8.87e-50 178
MsaG015143 MtrunA17_Chr1g0183641 31.100 418 253 12 89 500 93 481 8.15e-49 175
MsaG015143 MtrunA17_Chr3g0125811 31.514 403 242 11 104 495 190 569 5.53e-48 174
MsaG015143 MtrunA17_Chr1g0159461 32.564 390 229 11 118 495 224 591 1.43e-47 174
MsaG015143 MtrunA17_Chr4g0057891 31.683 404 252 9 103 497 133 521 1.57e-47 172
MsaG015143 MtrunA17_Chr4g0039661 32.880 368 228 8 131 495 203 554 5.35e-46 169
MsaG015143 MtrunA17_Chr8g0357601 31.320 447 265 12 81 504 133 560 2.23e-45 167
MsaG015143 MtrunA17_Chr5g0447691 29.397 398 251 10 107 495 167 543 6.06e-43 160
MsaG015143 MtrunA17_Chr2g0319091 32.126 414 238 15 101 495 189 578 1.23e-42 159
MsaG015143 MtrunA17_Chr3g0101141 30.894 369 221 10 140 495 194 541 4.02e-41 155
MsaG015143 MtrunA17_Chr8g0376381 30.673 401 232 15 112 501 162 527 1.58e-40 153
MsaG015143 MtrunA17_Chr5g0445331 28.682 387 256 8 116 495 158 531 1.60e-40 153
MsaG015143 MtrunA17_Chr4g0057291 30.993 413 222 16 112 496 285 662 1.85e-39 152
MsaG015143 MtrunA17_Chr1g0200401 31.206 423 221 16 109 495 70 458 1.87e-39 149
MsaG015143 MtrunA17_Chr4g0076091 28.244 393 253 8 114 497 172 544 1.00e-37 145
MsaG015143 MtrunA17_Chr2g0290241 27.171 357 228 11 154 497 89 426 2.38e-35 137
MsaG015143 MtrunA17_Chr2g0294461 26.835 395 271 9 109 495 200 584 8.06e-35 137
MsaG015143 MtrunA17_Chr4g0031711 25.238 420 282 11 89 496 334 733 3.55e-32 130
MsaG015143 MtrunA17_Chr2g0294471 26.531 392 273 10 109 495 194 575 7.78e-32 129
MsaG015143 MtrunA17_Chr4g0031741 28.362 409 240 17 111 498 276 652 1.36e-31 129
MsaG015143 MtrunA17_Chr2g0328391 26.329 414 258 14 103 496 283 669 1.92e-31 128
MsaG015143 MtrunA17_Chr7g0238891 27.143 420 263 12 93 495 346 739 4.70e-31 127
MsaG015143 MtrunA17_Chr2g0328411 28.108 370 224 14 144 495 308 653 1.34e-29 122
MsaG015143 MtrunA17_Chr2g0329591 29.430 316 203 9 98 409 53 352 4.18e-29 119
MsaG015143 MtrunA17_Chr4g0031701 24.311 399 269 11 66 449 201 581 1.28e-28 119
MsaG015143 MtrunA17_Chr7g0230731 27.806 392 242 14 116 497 369 729 1.80e-28 119
MsaG015143 MtrunA17_Chr3g0085681 24.554 448 258 13 105 495 11 435 3.33e-28 116
MsaG015143 MtrunA17_Chr2g0328401 30.798 263 157 8 200 447 356 608 3.74e-28 118
MsaG015143 MtrunA17_Chr7g0230771 27.949 390 244 15 116 497 372 732 5.93e-28 118
MsaG015143 MtrunA17_Chr4g0031721 25.175 429 280 13 84 496 281 684 3.11e-27 115
MsaG015143 MtrunA17_Chr5g0401131 27.273 396 251 14 118 495 113 489 4.26e-26 111
MsaG015143 MtrunA17_Chr4g0031731 24.590 427 284 13 87 497 220 624 7.38e-26 111
MsaG015143 MtrunA17_Chr2g0328431 27.933 358 220 13 154 496 320 654 1.86e-25 110
MsaG015143 MtrunA17_Chr7g0270031 25.377 398 263 14 109 495 179 553 3.29e-25 108
MsaG015143 MtrunA17_Chr2g0328341 24.605 443 283 15 71 496 230 638 1.20e-23 104
MsaG015143 MtrunA17_Chr3g0085361 24.860 358 203 8 193 495 3 349 3.72e-23 100
MsaG015143 MtrunA17_Chr8g0373561 28.267 375 227 13 136 497 197 542 4.43e-23 102
MsaG015143 MtrunA17_Chr2g0328381 24.379 443 282 15 71 495 233 640 6.29e-23 102
MsaG015143 MtrunA17_Chr4g0012071 25.527 427 271 15 79 497 165 552 4.25e-22 99.8
MsaG015143 MtrunA17_Chr4g0038851 30.043 233 142 7 105 335 34 247 2.16e-21 97.1
MsaG015143 MtrunA17_Chr4g0038851 28.000 150 102 3 349 495 322 468 9.72e-13 70.1
MsaG015143 MtrunA17_Chr5g0396491 28.936 235 144 8 104 335 41 255 4.77e-21 95.9
MsaG015143 MtrunA17_Chr5g0396491 31.646 158 94 5 345 495 327 477 1.81e-13 72.4
MsaG015143 MtrunA17_Chr7g0243151 26.161 409 253 14 105 495 206 583 1.65e-20 94.7
MsaG015143 MtrunA17_Chr2g0328361 24.936 389 232 13 119 495 274 614 1.23e-19 92.4
MsaG015143 MtrunA17_Chr1g0194621 23.500 400 275 12 109 495 136 517 2.64e-19 90.9
MsaG015143 MtrunA17_Chr2g0328371 26.068 234 145 8 202 421 2 221 1.02e-18 85.9
MsaG015143 MtrunA17_Chr8g0344101 24.747 396 262 12 118 495 222 599 1.34e-15 79.7
MsaG015143 MtrunA17_Chr7g0236851 27.597 308 189 13 206 495 365 656 1.93e-14 76.3
MsaG015143 MtrunA17_Chr4g0053901 23.488 430 257 16 118 495 58 467 5.25e-13 71.2
MsaG015143 MtrunA17_Chr5g0401421 21.564 422 277 10 118 495 34 445 6.29e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015143 AT4G08250.1 51.098 501 206 13 11 500 10 482 2.35e-158 459
MsaG015143 AT3G54220.1 36.386 415 229 16 94 499 265 653 1.04e-51 186
MsaG015143 AT5G41920.1 35.264 397 230 12 102 495 27 399 4.53e-51 179
MsaG015143 AT1G66350.1 32.609 414 232 15 90 495 131 505 1.12e-47 172
MsaG015143 AT5G66770.1 32.274 409 254 7 93 495 192 583 2.86e-47 173
MsaG015143 AT3G03450.1 31.266 403 234 14 107 495 171 544 1.45e-45 167
MsaG015143 AT5G17490.1 32.446 413 237 14 98 499 138 519 1.72e-45 167
MsaG015143 AT3G50650.1 33.699 365 214 7 141 495 195 541 1.87e-45 167
MsaG015143 AT1G55580.1 34.505 313 188 7 196 495 136 444 1.40e-43 160
MsaG015143 AT5G48150.1 29.639 388 240 10 120 495 123 489 1.20e-42 158
MsaG015143 AT5G48150.4 29.639 388 240 10 120 495 123 489 1.20e-42 158
MsaG015143 AT5G48150.2 29.639 388 240 10 120 495 123 489 1.20e-42 158
MsaG015143 AT5G48150.3 29.639 388 240 10 120 495 123 489 1.20e-42 158
MsaG015143 AT2G01570.1 30.882 408 236 14 107 501 212 586 6.12e-41 155
MsaG015143 AT4G17230.1 31.608 367 213 10 144 495 181 524 1.53e-40 153
MsaG015143 AT4G17230.2 31.608 367 213 10 144 495 181 524 1.53e-40 153
MsaG015143 AT1G21450.1 31.043 393 232 14 118 495 224 592 2.63e-40 154
MsaG015143 AT1G14920.1 29.756 410 236 16 107 500 160 533 5.61e-39 149
MsaG015143 AT2G04890.1 30.905 398 231 14 111 495 46 412 7.06e-39 146
MsaG015143 AT1G50600.3 30.789 380 229 12 130 495 166 525 1.97e-37 144
MsaG015143 AT1G50600.2 30.789 380 229 12 130 495 241 600 3.43e-37 145
MsaG015143 AT1G50600.1 30.789 380 229 12 130 495 237 596 4.02e-37 144
MsaG015143 AT1G07530.1 27.938 451 281 13 65 500 348 769 4.92e-37 145
MsaG015143 AT1G63100.1 29.078 423 262 13 93 496 226 629 3.65e-36 142
MsaG015143 AT1G63100.2 29.078 423 262 13 93 496 251 654 4.05e-36 142
MsaG015143 AT2G29065.1 26.598 391 260 10 119 496 252 628 7.18e-32 129
MsaG015143 AT2G29060.2 25.745 470 290 17 51 496 221 655 1.24e-31 129
MsaG015143 AT2G29060.1 25.745 470 290 17 51 496 258 692 1.43e-31 129
MsaG015143 AT1G07520.2 27.222 360 234 9 154 498 185 531 6.97e-31 126
MsaG015143 AT1G07520.4 27.222 360 234 9 154 498 185 531 6.97e-31 126
MsaG015143 AT1G07520.3 27.222 360 234 9 154 498 350 696 7.11e-31 127
MsaG015143 AT1G07520.1 27.222 360 234 9 154 498 349 695 7.84e-31 127
MsaG015143 AT3G46600.1 25.778 450 284 12 66 495 159 578 8.42e-31 126
MsaG015143 AT3G46600.2 27.889 398 237 12 118 495 3 370 8.66e-31 123
MsaG015143 AT3G46600.3 25.778 450 284 12 66 495 127 546 1.46e-30 125
MsaG015143 AT4G37650.1 28.070 399 249 14 119 495 146 528 1.04e-29 122
MsaG015143 AT5G59450.1 25.000 452 293 12 68 495 168 597 2.38e-29 122
MsaG015143 AT3G60630.1 27.970 404 257 12 110 497 238 623 1.98e-28 119
MsaG015143 AT2G37650.2 28.250 400 252 13 114 501 330 706 6.04e-27 115
MsaG015143 AT2G37650.1 28.250 400 252 13 114 501 342 718 8.25e-27 115
MsaG015143 AT2G45160.1 27.251 411 246 14 108 497 262 640 6.16e-26 112
MsaG015143 AT4G36710.1 27.913 369 233 12 136 495 140 484 9.44e-26 110
MsaG015143 AT4G00150.1 27.020 396 228 13 120 500 209 558 1.03e-20 95.9
MsaG015143 AT1G50420.1 32.203 236 135 9 105 335 43 258 2.81e-20 94.0
MsaG015143 AT1G50420.1 34.641 153 94 3 348 497 331 480 6.96e-18 86.7
MsaG015143 AT3G49950.1 25.469 373 225 13 153 496 60 408 3.23e-19 90.1
MsaG015143 AT5G52510.1 28.869 336 171 12 202 495 330 639 7.77e-19 90.1

Find 193 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGGTGAGGTAGGGTTTA+GGG 0.226810 3:-83144557 MsaT015143.1:CDS
CCTACTTCCGACAATGATTA+TGG 0.236287 3:-83145801 MsaT015143.1:CDS
GTCAACTGGGACACCTTTAC+AGG 0.297676 3:-83145750 MsaT015143.1:CDS
GCAGAACCGGGCCCGGGCTT+TGG 0.319278 3:-83144674 MsaT015143.1:CDS
CATTTCACCGAAGCCCTTCA+TGG 0.325802 3:-83145384 MsaT015143.1:CDS
TGTCAAGCAAAGCTGTTGTT+AGG 0.326046 3:-83144508 MsaT015143.1:CDS
TGGGTTTGTGGAAAGGTTCA+TGG 0.326737 3:-83144752 MsaT015143.1:CDS
TCCACCAACGTCACAAGCTT+TGG 0.330745 3:+83144799 None:intergenic
GGTTAGGTGAGGTAGGGTTT+AGG 0.331084 3:-83144558 MsaT015143.1:CDS
ACTGGTCTCCCATCGTCAAC+TGG 0.335690 3:-83145764 MsaT015143.1:CDS
AGCTTCGATGATGGCTTGAT+TGG 0.338111 3:+83145206 None:intergenic
GGTGGTGGTGGTTGTGGTGA+TGG 0.340117 3:+83145650 None:intergenic
GGAGAGTGGTTAGGTGAGGT+AGG 0.352680 3:-83144565 MsaT015143.1:CDS
GTGGTGGTTGTGGTGATGGA+TGG 0.363760 3:+83145654 None:intergenic
ATCAATGACCTCCACTTCTC+TGG 0.368955 3:-83145846 MsaT015143.1:CDS
ACCTCCTTCGCCGCTTCCCT+TGG 0.370284 3:-83145000 MsaT015143.1:CDS
CCTAGGATTGCAGGCTCGTT+GGG 0.371680 3:-83144631 MsaT015143.1:CDS
GGTTGTGGTGGTGGTGGTTG+TGG 0.377950 3:+83145644 None:intergenic
TTCCGATGCAGAACCGGGCC+CGG 0.381021 3:-83144681 MsaT015143.1:CDS
TTCGGTAGTTGGTGGGTTTG+TGG 0.382194 3:-83144764 MsaT015143.1:CDS
GCTTGTACGTGGAGAGGCTT+TGG 0.384610 3:-83144911 MsaT015143.1:CDS
CTTCCGCGCCAGCCATCAAT+AGG 0.391873 3:+83145517 None:intergenic
ATGAGGTGGTGAAAGTCATC+TGG 0.398824 3:+83145723 None:intergenic
GCCTAGGATTGCAGGCTCGT+TGG 0.400453 3:-83144632 MsaT015143.1:CDS
GAAGAAGTTGGTTCGGTAGT+TGG 0.401602 3:-83144775 MsaT015143.1:CDS
GGTAGGGTTTAGGGGAGTTC+CGG 0.404698 3:-83144548 MsaT015143.1:CDS
TTCTTCCTCATCGGTGGTTG+TGG 0.404871 3:+83145629 None:intergenic
TCCGATGCAGAACCGGGCCC+GGG 0.407928 3:-83144680 MsaT015143.1:CDS
CGATGAGGAAGAAGAAGAAA+TGG 0.410332 3:-83145619 MsaT015143.1:CDS
AAGCAGCAAGTGTGTCGTTT+TGG 0.410870 3:+83145280 None:intergenic
CATTTCTTCTTCTTCCTCAT+CGG 0.412349 3:+83145620 None:intergenic
GAACCGGGCCCGGGCTTTGG+TGG 0.417856 3:-83144671 MsaT015143.1:CDS
GAAGGACGGAAAGTTTCATC+TGG 0.418561 3:+83144943 None:intergenic
TGACATGGACGCGGCGTTCG+TGG 0.420981 3:+83145178 None:intergenic
GTTTGCTTTCTGCTTCCCTT+TGG 0.430877 3:-83144408 MsaT015143.1:CDS
CTCATCGGTGGTTGTGGTGG+TGG 0.431811 3:+83145635 None:intergenic
GCATTATCACGGACAGGAAC+CGG 0.434140 3:-83145066 MsaT015143.1:CDS
CCCAACGAGCCTGCAATCCT+AGG 0.435603 3:+83144631 None:intergenic
TCGCCTGCCGGTTTCTTGTA+CGG 0.437235 3:+83145026 None:intergenic
CACCACCCGTTCTATATATC+CGG 0.439796 3:+83144608 None:intergenic
GTAATAAGTTGGTGTTGGAT+TGG 0.441173 3:-83144441 MsaT015143.1:CDS
GCCCTTCATGGACTACTAGA+AGG 0.443992 3:-83145372 MsaT015143.1:CDS
GAAGTTGGTGATGATTCAAA+AGG 0.445291 3:-83145555 MsaT015143.1:CDS
AAGAATGAAGCAACTGATTC+CGG 0.447596 3:+83144844 None:intergenic
CATAATCATTGTCGGAAGTA+GGG 0.447652 3:+83145802 None:intergenic
ATGTCACCTTATGTCAAATT+CGG 0.447667 3:-83145240 MsaT015143.1:CDS
CGGAAGTAGGGGTGTTGGTG+AGG 0.449390 3:+83145814 None:intergenic
TGGGTATAGGGTTGAAGAGG+TGG 0.451536 3:-83144473 MsaT015143.1:CDS
AGAGAAGGTCGTGGGGAGAG+TGG 0.453369 3:-83144579 MsaT015143.1:CDS
GAGAGTGGTTAGGTGAGGTA+GGG 0.454793 3:-83144564 MsaT015143.1:CDS
TGAGGTAATGTTTGTTGTTG+TGG 0.455641 3:+83145325 None:intergenic
AAAACTAGTGCACCTATTGA+TGG 0.457233 3:-83145529 MsaT015143.1:CDS
GATGGGAGACCAGTGGTTCC+AGG 0.457583 3:+83145773 None:intergenic
AGAGAAGTGGAGGTCATTGA+TGG 0.464377 3:+83145848 None:intergenic
AAACATTACCTCACCACAAA+TGG 0.466163 3:-83145315 MsaT015143.1:CDS
TGAAGAGGAGAGAAGGTCGT+GGG 0.469399 3:-83144587 MsaT015143.1:CDS
GTGGGCCACAGCTTCGATGA+TGG 0.470189 3:+83145197 None:intergenic
AAGATGAGGACCGTTGTTGT+TGG 0.475317 3:+83145098 None:intergenic
AGGTCGTGGGGAGAGTGGTT+AGG 0.475697 3:-83144574 MsaT015143.1:CDS
CATGGACTACTAGAAGGTGC+TGG 0.477897 3:-83145366 MsaT015143.1:CDS
TCTCCACCAAAGCCCGGGCC+CGG 0.479183 3:+83144668 None:intergenic
ACAACAACGGTCCTCATCTT+CGG 0.479785 3:-83145095 MsaT015143.1:CDS
GGCCCGGGCTTTGGTGGAGA+GGG 0.485841 3:-83144665 MsaT015143.1:CDS
ATACCCTCTCCACCAAAGCC+CGG 0.489626 3:+83144662 None:intergenic
GTCAAGCAAAGCTGTTGTTA+GGG 0.489648 3:-83144507 MsaT015143.1:CDS
GCTGGCGCGGAAGCCTTAAC+CGG 0.490918 3:-83145507 MsaT015143.1:CDS
ATCGCCACCGTACAAGAAAC+CGG 0.491760 3:-83145033 MsaT015143.1:CDS
TAGGGTTGAAGAGGTGGGTG+TGG 0.493351 3:-83144467 MsaT015143.1:CDS
ATTCCGGTGCACGGTAACTA+AGG 0.494877 3:+83144860 None:intergenic
TAGTAGTCCATGAAGGGCTT+CGG 0.495192 3:+83145377 None:intergenic
ATGGTTGCACCTGGAACCAC+TGG 0.499209 3:-83145782 MsaT015143.1:CDS
ATCGGTGGTTGTGGTGGTGG+TGG 0.499565 3:+83145638 None:intergenic
TAGTTGGTGGGTTTGTGGAA+AGG 0.499576 3:-83144759 MsaT015143.1:CDS
TTCTGTCGTTGTTGTTGTTG+TGG 0.501931 3:+83145587 None:intergenic
GTCATCTGGGGCACCTGTAA+AGG 0.502615 3:+83145737 None:intergenic
TTGTCCAAGGGAAGCGGCGA+AGG 0.503279 3:+83144996 None:intergenic
GACATGGACGCGGCGTTCGT+GGG 0.503853 3:+83145179 None:intergenic
GTGACATGTCTTGAAGTAGT+TGG 0.504360 3:+83145256 None:intergenic
GGAAGTAGGGGTGTTGGTGA+GGG 0.508441 3:+83145815 None:intergenic
CATCATGGAAGGGGTCCAAT+GGG 0.510759 3:-83145145 MsaT015143.1:CDS
CACCTTCTAGTAGTCCATGA+AGG 0.513198 3:+83145370 None:intergenic
CCATAATCATTGTCGGAAGT+AGG 0.515061 3:+83145801 None:intergenic
TTCTTCTTCTTCCTCATCGG+TGG 0.515776 3:+83145623 None:intergenic
AGAAGAAGAACAAGTCCAAA+GGG 0.515921 3:+83144393 None:intergenic
TGTTGTTGGAAGCTAGTGAT+TGG 0.517924 3:+83145112 None:intergenic
GGATTGCAGGCTCGTTGGGC+CGG 0.518025 3:-83144627 MsaT015143.1:CDS
GGGTATAGGGTTGAAGAGGT+GGG 0.519727 3:-83144472 MsaT015143.1:CDS
GGGCCCGGGCTTTGGTGGAG+AGG 0.520373 3:-83144666 MsaT015143.1:CDS
TGGTGTTGGATTGGAAATCA+AGG 0.521049 3:-83144432 MsaT015143.1:CDS
ATGGACTACTAGAAGGTGCT+GGG 0.522101 3:-83145365 MsaT015143.1:CDS
GTGAAGAGGAGAGAAGGTCG+TGG 0.522620 3:-83144588 MsaT015143.1:CDS
GTACGGTGGCGATTGACCTC+CGG 0.522939 3:+83145043 None:intergenic
TACCCTCTCCACCAAAGCCC+GGG 0.525259 3:+83144663 None:intergenic
ATATAGAACGGGTGGTGAAG+AGG 0.526637 3:-83144602 MsaT015143.1:CDS
CTGCAGTGGTGGAAAGAAAA+CGG 0.528193 3:+83144973 None:intergenic
ACATCATGGAAGGGGTCCAA+TGG 0.528843 3:-83145146 MsaT015143.1:CDS
TTAGGTGAGGTAGGGTTTAG+GGG 0.528886 3:-83144556 MsaT015143.1:CDS
CTAGTGCACCTATTGATGGC+TGG 0.529907 3:-83145525 MsaT015143.1:CDS
GGGAGCTGTGTCCAGAGAAG+TGG 0.530921 3:+83145835 None:intergenic
GTTGTCATGGGGACCATTTG+TGG 0.530976 3:+83145302 None:intergenic
GGGTAGTAATAAGTTGGTGT+TGG 0.531656 3:-83144446 MsaT015143.1:CDS
CAGTAATACCATGGACATGA+TGG 0.531857 3:-83145880 None:intergenic
AAGTTGGTTCGGTAGTTGGT+GGG 0.534092 3:-83144771 MsaT015143.1:CDS
GGTGGAAGAAGAAGTTGGTT+CGG 0.535127 3:-83144782 MsaT015143.1:CDS
GAAGTTGGTTCGGTAGTTGG+TGG 0.538694 3:-83144772 MsaT015143.1:CDS
CTGGTCTCCCATCGTCAACT+GGG 0.539421 3:-83145763 MsaT015143.1:CDS
CCTGCCGGTTTCTTGTACGG+TGG 0.541192 3:+83145029 None:intergenic
ACATGCTAACGGCTCTAACA+TGG 0.542095 3:-83145421 MsaT015143.1:CDS
CAATGATTTGCAAAGCTCAC+CGG 0.544682 3:+83144529 None:intergenic
GCCCGGGCCCGGTTCTGCAT+CGG 0.547611 3:+83144679 None:intergenic
GGGTGTGGGTAGTAATAAGT+TGG 0.548725 3:-83144452 MsaT015143.1:CDS
GTGAGACTAATTCCTTGAGC+CGG 0.552046 3:+83145445 None:intergenic
CGGGTGGTGAAGAGGAGAGA+AGG 0.553224 3:-83144594 MsaT015143.1:CDS
TGTCATCGACTACGACATCA+TGG 0.554847 3:-83145160 MsaT015143.1:CDS
TGAGGTGGTGAAAGTCATCT+GGG 0.555233 3:+83145724 None:intergenic
TAGCTCGAGTGATATTGATC+CGG 0.555972 3:-83145464 MsaT015143.1:CDS
AGGGTTGAAGAGGTGGGTGT+GGG 0.556341 3:-83144466 MsaT015143.1:CDS
TTCCTCATCGGTGGTTGTGG+TGG 0.557874 3:+83145632 None:intergenic
ATCCATGTCCATCATGTCCA+TGG 0.558666 3:+83145872 None:intergenic
GGAAAGAAAACGGTTGTCCA+AGG 0.560068 3:+83144983 None:intergenic
TCAGTTGCTTCATTCTTGAA+CGG 0.560073 3:-83144838 MsaT015143.1:CDS
GAAGAGGAGAGAAGGTCGTG+GGG 0.560976 3:-83144586 MsaT015143.1:CDS
TTCGGATAACCGCATTATCA+CGG 0.561276 3:-83145077 MsaT015143.1:CDS
GGTAATGTTTGTTGTTGTGG+TGG 0.561567 3:+83145328 None:intergenic
AGATGACTTTCACCACCTCA+TGG 0.561702 3:-83145721 MsaT015143.1:CDS
CGATGGGTATAGGGTTGAAG+AGG 0.562357 3:-83144476 MsaT015143.1:CDS
CTGGGTCTAACCTGCAGTGG+TGG 0.565647 3:+83144962 None:intergenic
TTGGGCCGGATATATAGAAC+GGG 0.569905 3:-83144613 MsaT015143.1:CDS
AAGTGGCCGAATTTGACATA+AGG 0.570280 3:+83145234 None:intergenic
ATTGGATTAATGAAGCCCAT+TGG 0.571351 3:+83145130 None:intergenic
AAACGGTTGTCCAAGGGAAG+CGG 0.571859 3:+83144990 None:intergenic
GGTGCAACCATAATCATTGT+CGG 0.571868 3:+83145794 None:intergenic
TCACCTTAGTTACCGTGCAC+CGG 0.573305 3:-83144863 MsaT015143.1:CDS
ATCGACTACGACATCATGGA+AGG 0.578928 3:-83145156 MsaT015143.1:CDS
ATTGTCGGAAGTAGGGGTGT+TGG 0.580498 3:+83145809 None:intergenic
CCACCGTACAAGAAACCGGC+AGG 0.581224 3:-83145029 MsaT015143.1:CDS
TCCAAGGGAAGCGGCGAAGG+AGG 0.582127 3:+83144999 None:intergenic
AGTGATATTGATCCGGCTCA+AGG 0.583439 3:-83145457 MsaT015143.1:CDS
AGCTGTGTCCAGAGAAGTGG+AGG 0.585513 3:+83145838 None:intergenic
CATCTGGGTCTAACCTGCAG+TGG 0.586227 3:+83144959 None:intergenic
AAGGTGTCCCAGTTGACGAT+GGG 0.586507 3:+83145756 None:intergenic
AAGAAGAAGAACAAGTCCAA+AGG 0.591374 3:+83144392 None:intergenic
AAGTTGGTGATGATTCAAAA+GGG 0.593257 3:-83145554 MsaT015143.1:CDS
ACAATGATTATGGTTGCACC+TGG 0.593971 3:-83145791 MsaT015143.1:CDS
GAAGGAGGTTAATCGCCTGC+CGG 0.597149 3:+83145014 None:intergenic
CGACTACGACATCATGGAAG+GGG 0.598773 3:-83145154 MsaT015143.1:CDS
ACCTTCTAGTAGTCCATGAA+GGG 0.600557 3:+83145371 None:intergenic
CTCACTTCATCATTATTCAG+CGG 0.602060 3:-83144728 MsaT015143.1:CDS
GTGGGGAGAGTGGTTAGGTG+AGG 0.605688 3:-83144569 MsaT015143.1:CDS
TCCAAAGCTTGTGACGTTGG+TGG 0.608726 3:-83144800 MsaT015143.1:CDS
GCACCTATTGATGGCTGGCG+CGG 0.609141 3:-83145520 MsaT015143.1:CDS
ATAATCATTGTCGGAAGTAG+GGG 0.609271 3:+83145803 None:intergenic
ATTAAAGCTTGTACGTGGAG+AGG 0.611742 3:-83144917 MsaT015143.1:CDS
TCAAGCCATCATCGAAGCTG+TGG 0.613643 3:-83145202 MsaT015143.1:CDS
AAGCAACTGATTCCGGTGCA+CGG 0.618564 3:+83144851 None:intergenic
CGTACAAGCTTTAATGCAGA+AGG 0.623940 3:+83144925 None:intergenic
TTAGTCTCACAACATGCTAA+CGG 0.625561 3:-83145432 MsaT015143.1:CDS
CACGGACAGGAACCGGCCGG+AGG 0.629234 3:-83145059 MsaT015143.1:CDS
AATGCGGTTATCCGAAGATG+AGG 0.632509 3:+83145084 None:intergenic
AAAGGTGTCCCAGTTGACGA+TGG 0.634828 3:+83145755 None:intergenic
TGGATGGACTAAGCTGGTCG+AGG 0.635528 3:+83145670 None:intergenic
GTTGGGCCGGATATATAGAA+CGG 0.635781 3:-83144614 MsaT015143.1:CDS
AAGGACGGAAAGTTTCATCT+GGG 0.639197 3:+83144944 None:intergenic
GGTTCCTGTCCGTGATAATG+CGG 0.642931 3:+83145068 None:intergenic
CGATGATTGTGTCCATGAGG+TGG 0.643118 3:+83145709 None:intergenic
TCGACTACGACATCATGGAA+GGG 0.644449 3:-83145155 MsaT015143.1:CDS
GAATCCAAAGCTTGTGACGT+TGG 0.644734 3:-83144803 MsaT015143.1:CDS
CACCACCACAACCACCGATG+AGG 0.645241 3:-83145634 MsaT015143.1:CDS
ATAACCGCATTATCACGGAC+AGG 0.646058 3:-83145072 MsaT015143.1:CDS
TATCACGGACAGGAACCGGC+CGG 0.647005 3:-83145062 MsaT015143.1:CDS
TGATGTCGTAGTCGATGACA+TGG 0.647412 3:+83145163 None:intergenic
ATATCACTCGAGCTAAGTCA+CGG 0.648503 3:+83145472 None:intergenic
TGGCTTGATTGGCTGTGAAG+TGG 0.648617 3:+83145217 None:intergenic
ACTAAGCTGGTCGAGGACAG+TGG 0.650840 3:+83145677 None:intergenic
GAAAGAAAACGGTTGTCCAA+GGG 0.651213 3:+83144984 None:intergenic
TGGACTACTAGAAGGTGCTG+GGG 0.652604 3:-83145364 MsaT015143.1:CDS
CATGGGGACCATTTGTGGTG+AGG 0.653840 3:+83145307 None:intergenic
AAGGGCTTCGGTGAAATGAG+CGG 0.654823 3:+83145389 None:intergenic
TCTGCATTAAAGCTTGTACG+TGG 0.657776 3:-83144922 MsaT015143.1:CDS
CGTAGTCGATGACATGGACG+CGG 0.658711 3:+83145169 None:intergenic
TACCATGGACATGATGGACA+TGG 0.658713 3:-83145874 None:intergenic
TGGTGATGGATGGACTAAGC+TGG 0.659130 3:+83145664 None:intergenic
GGCCGGATATATAGAACGGG+TGG 0.661675 3:-83144610 MsaT015143.1:CDS
CAAGCTTTAATGCAGAAGGA+CGG 0.671677 3:+83144929 None:intergenic
GGACTACTAGAAGGTGCTGG+GGG 0.674008 3:-83145363 MsaT015143.1:CDS
GGTGGCGATTGACCTCCGGC+CGG 0.683391 3:+83145047 None:intergenic
AGTTGACGATGGGAGACCAG+TGG 0.695859 3:+83145766 None:intergenic
ACGTTGGTGGAAGAAGAAGT+TGG 0.697366 3:-83144787 MsaT015143.1:CDS
GGTGCACGGTAACTAAGGTG+AGG 0.709219 3:+83144865 None:intergenic
TCACTAGCTTCCAACAACAA+CGG 0.720928 3:-83145108 MsaT015143.1:CDS
GAGGTGGTGAAAGTCATCTG+GGG 0.725269 3:+83145725 None:intergenic
CCTCGATGATTGTGTCCATG+AGG 0.737785 3:+83145706 None:intergenic
CCTCATGGACACAATCATCG+AGG 0.768679 3:-83145706 MsaT015143.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 83144375 83145892 83144375 ID=MsaG015143
Chr3 mRNA 83144375 83145892 83144375 ID=MsaT015143.1;Parent=MsaG015143
Chr3 exon 83144375 83145892 83144375 ID=MsaT015143.1.exon1;Parent=MsaT015143.1
Chr3 CDS 83144375 83145892 83144375 ID=cds.MsaT015143.1;Parent=MsaT015143.1
Gene Sequence

>MsaT015143.1

ATGGACATGATGGACATGGATGCCATCAATGACCTCCACTTCTCTGGACACAGCTCCCTCACCAACACCCCTACTTCCGACAATGATTATGGTTGCACCTGGAACCACTGGTCTCCCATCGTCAACTGGGACACCTTTACAGGTGCCCCAGATGACTTTCACCACCTCATGGACACAATCATCGAGGACAGAACCACTGTCCTCGACCAGCTTAGTCCATCCATCACCACAACCACCACCACCACAACCACCGATGAGGAAGAAGAAGAAATGGAAACAACAACCACAACAACAACAACGACAGAAAAAACACAAGAAGTTGGTGATGATTCAAAAGGGCTAAAACTAGTGCACCTATTGATGGCTGGCGCGGAAGCCTTAACCGGTTCAACCAAAAACCGTGACTTAGCTCGAGTGATATTGATCCGGCTCAAGGAATTAGTCTCACAACATGCTAACGGCTCTAACATGGAGAGACTCGCCGCTCATTTCACCGAAGCCCTTCATGGACTACTAGAAGGTGCTGGGGGTGCGCACAACAACCACCACAACAACAAACATTACCTCACCACAAATGGTCCCCATGACAACCAAAACGACACACTTGCTGCTTTCCAACTACTTCAAGACATGTCACCTTATGTCAAATTCGGCCACTTCACAGCCAATCAAGCCATCATCGAAGCTGTGGCCCACGAACGCCGCGTCCATGTCATCGACTACGACATCATGGAAGGGGTCCAATGGGCTTCATTAATCCAATCACTAGCTTCCAACAACAACGGTCCTCATCTTCGGATAACCGCATTATCACGGACAGGAACCGGCCGGAGGTCAATCGCCACCGTACAAGAAACCGGCAGGCGATTAACCTCCTTCGCCGCTTCCCTTGGACAACCGTTTTCTTTCCACCACTGCAGGTTAGACCCAGATGAAACTTTCCGTCCTTCTGCATTAAAGCTTGTACGTGGAGAGGCTTTGGTTTTCAACTGCATGCTGAATTTACCTCACCTTAGTTACCGTGCACCGGAATCAGTTGCTTCATTCTTGAACGGAGCAAAAACGTTGAATCCAAAGCTTGTGACGTTGGTGGAAGAAGAAGTTGGTTCGGTAGTTGGTGGGTTTGTGGAAAGGTTCATGGACTCACTTCATCATTATTCAGCGGTTTTTGATTCATTGGAGGCTGGTTTTCCGATGCAGAACCGGGCCCGGGCTTTGGTGGAGAGGGTATTTTTTGGGCCTAGGATTGCAGGCTCGTTGGGCCGGATATATAGAACGGGTGGTGAAGAGGAGAGAAGGTCGTGGGGAGAGTGGTTAGGTGAGGTAGGGTTTAGGGGAGTTCCGGTGAGCTTTGCAAATCATTGTCAAGCAAAGCTGTTGTTAGGGCTTTTTAACGATGGGTATAGGGTTGAAGAGGTGGGTGTGGGTAGTAATAAGTTGGTGTTGGATTGGAAATCAAGGCGTTTGCTTTCTGCTTCCCTTTGGACTTGTTCTTCTTCTTCAGATTCTGATTTATAG

Protein sequence

>MsaT015143.1

MDMMDMDAINDLHFSGHSSLTNTPTSDNDYGCTWNHWSPIVNWDTFTGAPDDFHHLMDTIIEDRTTVLDQLSPSITTTTTTTTTDEEEEEMETTTTTTTTTEKTQEVGDDSKGLKLVHLLMAGAEALTGSTKNRDLARVILIRLKELVSQHANGSNMERLAAHFTEALHGLLEGAGGAHNNHHNNKHYLTTNGPHDNQNDTLAAFQLLQDMSPYVKFGHFTANQAIIEAVAHERRVHVIDYDIMEGVQWASLIQSLASNNNGPHLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDPDETFRPSALKLVRGEALVFNCMLNLPHLSYRAPESVASFLNGAKTLNPKLVTLVEEEVGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRTGGEEERRSWGEWLGEVGFRGVPVSFANHCQAKLLLGLFNDGYRVEEVGVGSNKLVLDWKSRRLLSASLWTCSSSSDSDL*