AlfalfaGEDB | MsaG015196

M. sativa ssp. caerulea / MsaG015196

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015196	XP_039687382.1	97.311	595	14	1	1	595	1	593	0.0	1197

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015196	sp\|Q84WU6\|ARFQ_ARATH	47.950	561	269	11	12	562	12	559	2.00e-163	482

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015196	tr\|G7J463\|G7J463_MEDTR	97.311	595	14	1	1	595	1	593	0.0	1197

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015196	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015196	MtrunA17_Chr3g0115271	97.311	595	14	1	1	595	1	593	0.0	1197
MsaG015196	MtrunA17_Chr5g0424931	44.846	553	250	14	19	560	19	527	2.99e-146	433
MsaG015196	MtrunA17_Chr2g0326761	43.494	561	281	14	15	556	7	550	2.01e-129	395
MsaG015196	MtrunA17_Chr5g0417281	40.598	569	261	14	16	564	8	519	7.63e-128	385
MsaG015196	MtrunA17_Chr7g0264171	42.857	525	249	16	15	503	27	536	1.26e-124	380
MsaG015196	MtrunA17_Chr4g0028971	47.991	448	215	10	16	450	9	451	1.99e-124	382
MsaG015196	MtrunA17_Chr1g0181211	41.426	589	288	18	16	575	24	584	6.36e-122	375
MsaG015196	MtrunA17_Chr1g0199681	43.340	473	200	13	16	450	91	533	1.71e-118	367
MsaG015196	MtrunA17_Chr1g0178011	37.085	542	221	12	7	541	3	431	2.51e-107	330
MsaG015196	MtrunA17_Chr5g0436761	39.696	461	220	9	10	462	3	413	6.84e-100	311

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015196	AT1G77850.2	47.950	561	269	11	12	562	12	559	1.55e-164	482
MsaG015196	AT1G77850.1	47.950	561	269	11	12	562	12	559	2.03e-164	482
MsaG015196	AT4G30080.1	42.376	564	284	14	16	561	16	556	1.21e-121	375
MsaG015196	AT2G28350.2	46.389	457	209	10	15	447	6	450	7.04e-120	370
MsaG015196	AT2G28350.1	46.389	457	209	10	15	447	6	450	8.44e-120	370
MsaG015196	AT5G37020.2	37.101	407	211	8	16	413	19	389	7.81e-70	240
MsaG015196	AT5G37020.1	37.101	407	211	8	16	413	19	389	1.84e-69	240
MsaG015196	AT1G30330.3	38.366	404	201	8	8	399	10	377	7.54e-69	240
MsaG015196	AT1G30330.2	38.366	404	201	8	8	399	10	377	7.54e-69	240
MsaG015196	AT1G30330.1	38.250	400	203	7	8	399	12	375	1.03e-68	240

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Find 186 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACTAGAGGGGTATC+TGG	0.298766	3:+83766459	MsaT015196.1:CDS
AAACCCTAGAATTGACGGAG+GGG	0.688106	3:-83764402	None:intergenic
AAACTCTGGCGAGCTATCGC+CGG	0.546085	3:+83764364	MsaT015196.1:CDS
AAAGAAGTTCCACCTGCCAA+GGG	0.653496	3:-83766398	None:intergenic
AAAGGACTAGAGGGGTATCT+GGG	0.471476	3:+83766460	MsaT015196.1:CDS
AAAGTACTGTAACTCAACAA+TGG	0.650302	3:-83766558	None:intergenic
AAATCCCCTCCGTCAATTCT+AGG	0.308448	3:+83764398	MsaT015196.1:CDS
AAATCCGACCACCCCGCTCT+CGG	0.548356	3:-83765189	None:intergenic
AAATGGCAGCACAGGGGATG+GGG	0.452139	3:+83765148	MsaT015196.1:CDS
AAATTGCTCGACAGGCTTGA+TGG	0.418640	3:+83766990	MsaT015196.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	83764310	83767055	83764310	ID=MsaG015196
Chr3	mRNA	83764310	83767055	83764310	ID=MsaT015196.1;Parent=MsaG015196
Chr3	exon	83764310	83765392	83764310	ID=MsaT015196.1.exon1;Parent=MsaT015196.1
Chr3	CDS	83764310	83765392	83764310	ID=cds.MsaT015196.1;Parent=MsaT015196.1
Chr3	exon	83766351	83767055	83766351	ID=MsaT015196.1.exon2;Parent=MsaT015196.1
Chr3	CDS	83766351	83767055	83766351	ID=cds.MsaT015196.1;Parent=MsaT015196.1

Gene Sequence

>MsaT015196.1

ATGAACCGCCAAGTACTACCACCGTCTCCAAAAAACGCAACCACACTCAACCCCAAACTCTGGCGAGCTATCGCCGGCGCTGCCGTGCAAATCCCCTCCGTCAATTCTAGGGTTTACTACTTCCCTCAAGGTCACATGGACCAAGCTACTTCACTTCCGAACAATCTCTCACCTCTTCTTCTCTCTCGTCCCTACATTCTCTGCTCCGTCTCCGCCGTTCATTTCCTCGCCGATCCGAAAACCGATGAGGTTTTCGCTAAGCTTTTTCTTCAACCGTTGAATGATTTCACTGTTAATTTTCCACGGATTCCGGTGATTGAAGCTGACGACGGTGAGAGGATTTCTTCGTTTGCGAAGATTCTTACCCCGTCTGATGCGAACAACGGTGGTGGATTTTCTGTTCCGAGGTTTTGTGCTGATTCGATTTTTCCTCCGTTGGATTATAGTATGGATCCTCCGTTGCAGAATTTGTTGATTACTGATGTTCATGGTTTGACTTGGGAGTTTCGTCACATTTACCGTGGAACGCCGCGCCGGCATTTGTTGACCACCGGTTGGAGTAGGTTTGTGAACGCTAAGAAGCTTGTTGCTGGTGATTCCGTTGTTTTTATGAAGAATACTAGAGGTGCAATGTTCATCGGAATCCGTCGTGCTGTTCGATTAGTTCCGAATCGGAGTAGCGCCGGTGGCGGTGTTTGCTCCGATGTGTCGAGATTGTGTCTTCCGATCTGTGGAGTGAGAAGTAGGGTGGATGAAGAAGAGAAGCTGGTGGATGAGAAGGCGTTTTCGAGGCACGGGAAGGGGAAGTTGTCTCCGGTGGCGGTTGCGGAGGCGGCGGAAATGGCAGCACAGGGGATGGGGTTTGAAGTGGTGTATTATCCGAGAGCGGGGTGGTCGGATTTTGTGTTGAAAGCGGAGGTTGTGGATGCGGCGATGAGTGTTACTTGGTGTCCTGGAATGAGAATCAAAATGGCTGTGGAGACTGATGATTCTTCCAGGACTACTTGGTTTCAAGGTGTAGTGTCTCAGGTTTCTGTTCCTGATCGTGGGGCTTGGAGAGGTTCACCTTGGCGTATGCTTCATATTACATGGGACGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGGTGGAACTTCTTTCTACTACACCTTCCCTTCATACGCCCTTTCCCCCATTGAAAAGGACTAGAGGGGTATCTGGGGTGTTAACTGATGGAGATGGAGACCCCTTTTCTATCACAGGGTTCACTAATTCAACAATGGGACAATTGAATCAACCATTGTTGAGTTACAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCCGTTTCAAGTTTTTCCAACTTTCCAGGTGATAACTTCCGTCTTTGTATGGGTAACTCCTTTGGCAGCAACACAGTGCCGGGGTTAAAATCTTTTTCAACGGATCTAAACGTTGGCAGTTCTCACTCTGGTGATTTTTCACCAGAGAGCCAGAGTAGTTTGCCTTCCTTTGGCACGGATTTTGTTCGGAACTACAACTGCAACTCAATGAAACCCGGGCCTGTAACTTTTCAGCTATTTGGTGCAGTCATTCAGACAGAACAGCCCGTTGAAAGTGGTTCAAATGGTACTGTTAGCACAGGAGATGACAGCAGTAAGGGCTGCAACGAAACTGAAGGCATTAACAACCCTCTTGAGGATTCTACTTACTCAAAATTGCTCGACAGGCTTGATGGCCAGTGCCAAATAGCCTCTACAGTTGAGGCGTGCTATCTGTGA

Protein sequence

>MsaT015196.1

MNRQVLPPSPKNATTLNPKLWRAIAGAAVQIPSVNSRVYYFPQGHMDQATSLPNNLSPLLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFTVNFPRIPVIEADDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPLQNLLITDVHGLTWEFRHIYRGTPRRHLLTTGWSRFVNAKKLVAGDSVVFMKNTRGAMFIGIRRAVRLVPNRSSAGGGVCSDVSRLCLPICGVRSRVDEEEKLVDEKAFSRHGKGKLSPVAVAEAAEMAAQGMGFEVVYYPRAGWSDFVLKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWFQGVVSQVSVPDRGAWRGSPWRMLHITWDEPEVLQTSKWVSPWQVELLSTTPSLHTPFPPLKRTRGVSGVLTDGDGDPFSITGFTNSTMGQLNQPLLSYSTFPAGMQGARHDLFSVSSFSNFPGDNFRLCMGNSFGSNTVPGLKSFSTDLNVGSSHSGDFSPESQSSLPSFGTDFVRNYNCNSMKPGPVTFQLFGAVIQTEQPVESGSNGTVSTGDDSSKGCNETEGINNPLEDSTYSKLLDRLDGQCQIASTVEACYL*