Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015290 | XP_013460953.1 | 92.788 | 513 | 32 | 4 | 1 | 510 | 1 | 511 | 0.0 | 971 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015290 | sp|Q9STM4|C3H43_ARATH | 55.152 | 330 | 140 | 6 | 157 | 478 | 93 | 422 | 7.09e-125 | 375 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015290 | tr|G8A2H7|G8A2H7_MEDTR | 92.788 | 513 | 32 | 4 | 1 | 510 | 1 | 511 | 0.0 | 971 |
Gene ID | Type | Classification |
---|---|---|
MsaG015290 | TF | C3H |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015290 | MtrunA17_Chr3g0116431 | 92.788 | 513 | 32 | 4 | 1 | 510 | 1 | 511 | 0.0 | 971 |
MsaG015290 | MtrunA17_Chr4g0058011 | 52.355 | 552 | 198 | 13 | 17 | 510 | 25 | 569 | 0.0 | 534 |
MsaG015290 | MtrunA17_Chr7g0249221 | 35.849 | 371 | 205 | 7 | 170 | 510 | 27 | 394 | 7.71e-73 | 237 |
MsaG015290 | MtrunA17_Chr5g0438891 | 38.507 | 335 | 164 | 12 | 170 | 482 | 36 | 350 | 2.27e-65 | 217 |
MsaG015290 | MtrunA17_Chr4g0066941 | 34.021 | 388 | 156 | 9 | 168 | 476 | 41 | 407 | 8.10e-60 | 205 |
MsaG015290 | MtrunA17_Chr2g0286151 | 34.783 | 345 | 181 | 10 | 168 | 475 | 42 | 379 | 2.01e-52 | 184 |
MsaG015290 | MtrunA17_Chr1g0195891 | 33.542 | 319 | 166 | 9 | 163 | 449 | 39 | 343 | 1.72e-49 | 173 |
MsaG015290 | MtrunA17_Chr1g0195891 | 41.880 | 117 | 63 | 2 | 398 | 510 | 90 | 205 | 2.73e-20 | 92.4 |
MsaG015290 | MtrunA17_Chr8g0356241 | 30.864 | 405 | 166 | 13 | 136 | 501 | 165 | 494 | 1.91e-45 | 166 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015290 | AT3G48440.1 | 55.152 | 330 | 140 | 6 | 157 | 478 | 93 | 422 | 7.21e-126 | 375 |
MsaG015290 | AT5G63260.1 | 55.556 | 342 | 140 | 5 | 170 | 507 | 98 | 431 | 2.95e-123 | 368 |
MsaG015290 | AT5G63260.1 | 42.683 | 82 | 42 | 2 | 167 | 246 | 328 | 406 | 6.45e-14 | 74.3 |
MsaG015290 | AT5G63260.2 | 53.073 | 358 | 140 | 6 | 170 | 507 | 98 | 447 | 7.52e-119 | 357 |
MsaG015290 | AT5G63260.2 | 42.683 | 82 | 42 | 2 | 167 | 246 | 344 | 422 | 8.65e-14 | 73.9 |
MsaG015290 | AT3G02830.1 | 40.187 | 321 | 171 | 6 | 170 | 477 | 37 | 349 | 1.42e-72 | 236 |
MsaG015290 | AT3G02830.1 | 45.545 | 101 | 54 | 1 | 398 | 497 | 81 | 181 | 2.92e-18 | 87.4 |
MsaG015290 | AT3G02830.1 | 42.529 | 87 | 43 | 2 | 170 | 253 | 271 | 353 | 4.58e-12 | 68.2 |
MsaG015290 | AT3G02830.2 | 40.187 | 321 | 171 | 6 | 170 | 477 | 17 | 329 | 1.65e-72 | 235 |
MsaG015290 | AT3G02830.2 | 45.545 | 101 | 54 | 1 | 398 | 497 | 61 | 161 | 2.93e-18 | 87.0 |
MsaG015290 | AT3G02830.2 | 42.529 | 87 | 43 | 2 | 170 | 253 | 251 | 333 | 5.59e-12 | 67.8 |
MsaG015290 | AT5G16540.3 | 40.777 | 309 | 153 | 7 | 170 | 477 | 18 | 297 | 5.74e-70 | 228 |
MsaG015290 | AT5G16540.3 | 33.158 | 190 | 58 | 6 | 169 | 292 | 62 | 248 | 1.01e-17 | 85.1 |
MsaG015290 | AT5G16540.3 | 43.529 | 85 | 41 | 2 | 170 | 251 | 219 | 299 | 5.17e-12 | 67.8 |
MsaG015290 | AT5G16540.1 | 40.777 | 309 | 153 | 7 | 170 | 477 | 39 | 318 | 5.88e-70 | 228 |
MsaG015290 | AT5G16540.1 | 33.158 | 190 | 58 | 6 | 169 | 292 | 83 | 269 | 1.02e-17 | 85.5 |
MsaG015290 | AT5G16540.1 | 43.529 | 85 | 41 | 2 | 170 | 251 | 240 | 320 | 4.83e-12 | 68.2 |
MsaG015290 | AT3G06410.1 | 40.059 | 337 | 164 | 9 | 168 | 473 | 49 | 378 | 1.62e-68 | 227 |
MsaG015290 | AT3G06410.1 | 46.914 | 81 | 41 | 1 | 399 | 477 | 97 | 177 | 1.17e-17 | 85.9 |
MsaG015290 | AT3G06410.1 | 46.154 | 78 | 42 | 0 | 397 | 474 | 49 | 126 | 9.16e-17 | 83.2 |
MsaG015290 | AT3G06410.1 | 34.884 | 86 | 49 | 2 | 163 | 245 | 297 | 378 | 1.77e-11 | 66.6 |
MsaG015290 | AT2G47850.1 | 37.079 | 356 | 187 | 10 | 148 | 476 | 18 | 363 | 5.80e-68 | 226 |
MsaG015290 | AT2G47850.1 | 40.000 | 90 | 39 | 2 | 168 | 250 | 284 | 365 | 1.72e-12 | 70.1 |
MsaG015290 | AT2G47850.3 | 37.079 | 356 | 187 | 10 | 148 | 476 | 18 | 363 | 5.80e-68 | 226 |
MsaG015290 | AT2G47850.3 | 40.000 | 90 | 39 | 2 | 168 | 250 | 284 | 365 | 1.72e-12 | 70.1 |
MsaG015290 | AT5G18550.1 | 38.485 | 330 | 174 | 8 | 168 | 473 | 46 | 370 | 2.79e-66 | 221 |
MsaG015290 | AT5G18550.1 | 50.000 | 78 | 39 | 0 | 397 | 474 | 46 | 123 | 1.48e-18 | 88.6 |
MsaG015290 | AT5G18550.3 | 38.485 | 330 | 174 | 8 | 168 | 473 | 14 | 338 | 3.40e-66 | 220 |
MsaG015290 | AT5G18550.3 | 50.000 | 78 | 39 | 0 | 397 | 474 | 14 | 91 | 2.37e-18 | 87.8 |
MsaG015290 | AT5G18550.4 | 38.485 | 330 | 174 | 8 | 168 | 473 | 46 | 370 | 4.32e-66 | 221 |
MsaG015290 | AT5G18550.4 | 50.000 | 78 | 39 | 0 | 397 | 474 | 46 | 123 | 1.97e-18 | 88.2 |
MsaG015290 | AT1G04990.1 | 37.243 | 341 | 188 | 10 | 147 | 482 | 21 | 340 | 2.73e-64 | 214 |
MsaG015290 | AT1G04990.6 | 37.243 | 341 | 188 | 10 | 147 | 482 | 21 | 340 | 2.73e-64 | 214 |
MsaG015290 | AT1G04990.2 | 37.243 | 341 | 188 | 10 | 147 | 482 | 21 | 340 | 2.73e-64 | 214 |
MsaG015290 | AT5G16540.2 | 38.835 | 309 | 152 | 8 | 170 | 477 | 39 | 311 | 1.12e-62 | 209 |
MsaG015290 | AT5G16540.2 | 33.158 | 190 | 58 | 6 | 169 | 292 | 83 | 269 | 9.42e-18 | 85.5 |
MsaG015290 | AT5G16540.2 | 43.902 | 82 | 38 | 1 | 170 | 251 | 240 | 313 | 1.13e-12 | 70.1 |
MsaG015290 | AT5G18550.2 | 36.061 | 330 | 169 | 8 | 168 | 473 | 46 | 357 | 4.93e-59 | 202 |
MsaG015290 | AT5G18550.2 | 50.000 | 78 | 39 | 0 | 397 | 474 | 46 | 123 | 1.45e-18 | 88.6 |
MsaG015290 | AT2G32930.2 | 35.277 | 343 | 192 | 10 | 148 | 479 | 19 | 342 | 9.52e-59 | 201 |
MsaG015290 | AT2G32930.3 | 35.542 | 332 | 184 | 10 | 159 | 479 | 3 | 315 | 1.32e-57 | 197 |
MsaG015290 | AT2G32930.1 | 34.985 | 343 | 189 | 11 | 148 | 479 | 19 | 338 | 2.97e-55 | 192 |
MsaG015290 | AT1G04990.5 | 34.897 | 341 | 176 | 11 | 147 | 482 | 21 | 320 | 3.90e-55 | 190 |
MsaG015290 | AT5G16540.4 | 38.790 | 281 | 142 | 7 | 170 | 449 | 18 | 269 | 1.13e-53 | 182 |
MsaG015290 | AT5G16540.4 | 49.351 | 77 | 39 | 0 | 398 | 474 | 62 | 138 | 8.66e-19 | 87.0 |
MsaG015290 | AT5G16540.4 | 33.158 | 190 | 58 | 6 | 169 | 292 | 62 | 248 | 8.40e-18 | 84.0 |
MsaG015290 | AT5G16540.4 | 46.835 | 79 | 39 | 2 | 399 | 476 | 18 | 94 | 4.92e-14 | 72.8 |
MsaG015290 | AT2G47850.2 | 33.140 | 344 | 191 | 11 | 148 | 476 | 18 | 337 | 1.26e-49 | 176 |
MsaG015290 | AT2G47850.2 | 40.000 | 90 | 39 | 2 | 168 | 250 | 258 | 339 | 9.91e-13 | 70.5 |
MsaG015290 | AT1G04990.3 | 36.604 | 265 | 146 | 9 | 223 | 482 | 12 | 259 | 6.28e-46 | 163 |
MsaG015290 | AT1G04990.3 | 42.105 | 76 | 44 | 0 | 217 | 292 | 177 | 252 | 1.05e-12 | 69.7 |
MsaG015290 | AT3G12680.1 | 30.081 | 369 | 196 | 9 | 149 | 474 | 150 | 499 | 1.65e-45 | 167 |
MsaG015290 | AT3G12680.1 | 31.118 | 331 | 161 | 10 | 136 | 428 | 198 | 499 | 6.26e-37 | 143 |
MsaG015290 | AT3G12680.1 | 36.095 | 169 | 64 | 3 | 171 | 297 | 338 | 504 | 1.93e-25 | 110 |
MsaG015290 | AT3G12680.1 | 45.977 | 87 | 42 | 2 | 394 | 478 | 217 | 300 | 1.28e-16 | 83.2 |
MsaG015290 | AT2G47850.4 | 38.618 | 246 | 118 | 8 | 256 | 476 | 4 | 241 | 2.63e-43 | 157 |
MsaG015290 | AT2G47850.4 | 41.935 | 93 | 44 | 1 | 200 | 292 | 157 | 239 | 2.19e-17 | 84.0 |
MsaG015290 | AT2G47850.4 | 40.000 | 90 | 39 | 2 | 168 | 250 | 162 | 243 | 3.95e-13 | 71.2 |
MsaG015290 | AT1G04990.4 | 33.955 | 268 | 129 | 11 | 223 | 482 | 12 | 239 | 3.79e-37 | 139 |
MsaG015290 | AT1G48195.1 | 64.935 | 77 | 27 | 0 | 397 | 473 | 4 | 80 | 5.58e-32 | 118 |
MsaG015290 | AT1G48195.1 | 38.961 | 77 | 47 | 0 | 215 | 291 | 4 | 80 | 1.04e-13 | 67.0 |
Find 133 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGATATGGAATTTGCAAATT+TGG | 0.116818 | 3:-85175261 | MsaT015290.1:CDS |
TCAGGTTCACCAGGTCTTTC+TGG | 0.127881 | 3:+85175526 | None:intergenic |
AAGACTGGAACTTGCAAATT+TGG | 0.144169 | 3:-85178041 | MsaT015290.1:CDS |
GAACCGGTGCGCATGTAATA+AGG | 0.235921 | 3:+85176740 | None:intergenic |
AAAATACCTTGCATTCTATC+TGG | 0.302106 | 3:+85177705 | None:intergenic |
CGCACCGGTTCTTGTAAGTT+TGG | 0.307678 | 3:-85176728 | MsaT015290.1:CDS |
GGCAGGAGAAAGAGATGAAT+TGG | 0.309939 | 3:-85177741 | MsaT015290.1:CDS |
TCCATTCCAGTCAGAACTTC+GGG | 0.313058 | 3:+85176508 | None:intergenic |
GGAGGGTATGACTCCACTTT+AGG | 0.326168 | 3:-85176665 | MsaT015290.1:CDS |
TGTAATGAGTGCACACATTC+TGG | 0.330211 | 3:+85175286 | None:intergenic |
TTTAAGAAGAAACTGCATTC+AGG | 0.330498 | 3:+85175508 | None:intergenic |
ACCTGGTTTCTTCTCCAAAC+AGG | 0.348538 | 3:+85177996 | None:intergenic |
TGCACTCATTACAACCGATA+TGG | 0.357948 | 3:-85175276 | MsaT015290.1:CDS |
TAAGCATTCGTTTCCATAGC+TGG | 0.369326 | 3:+85175586 | None:intergenic |
CAAATTTGCAAATTCCATAT+CGG | 0.369456 | 3:+85175262 | None:intergenic |
TCAACAATCTCAATCACATT+TGG | 0.369732 | 3:-85178579 | MsaT015290.1:CDS |
TGACAGTATTATTCAAGATC+TGG | 0.369833 | 3:-85177005 | MsaT015290.1:intron |
AAAGAACAGTCTTCAGCTTC+GGG | 0.371604 | 3:+85178071 | None:intergenic |
GCAAGTTTAATCACCCTGTT+TGG | 0.377149 | 3:-85178010 | MsaT015290.1:CDS |
TATGACTCCACTTTAGGATA+TGG | 0.386430 | 3:-85176659 | MsaT015290.1:CDS |
TTCTGACTGGAATGGATATC+AGG | 0.390808 | 3:-85176501 | MsaT015290.1:intron |
GAGGATGGAATTGAGGAAAA+AGG | 0.391224 | 3:-85178437 | MsaT015290.1:CDS |
TGCTCCAAACTTACAAGAAC+CGG | 0.396802 | 3:+85176724 | None:intergenic |
CCTTGGCCTACCTATTCGTT+TGG | 0.402338 | 3:-85176901 | MsaT015290.1:intron |
GATAACGTCCAGGCATAGTT+GGG | 0.405460 | 3:+85175199 | None:intergenic |
TGCTGTTCTAGAATTTGATA+AGG | 0.409379 | 3:-85178387 | MsaT015290.1:CDS |
AAAAGAACAGTCTTCAGCTT+CGG | 0.412026 | 3:+85178070 | None:intergenic |
TGATTGAGATATGAGGGTTC+AGG | 0.415836 | 3:+85178509 | None:intergenic |
TGAGGGTTCAGGATGATGAT+TGG | 0.419375 | 3:+85178520 | None:intergenic |
TCAGGATGATGATTGGAAAC+AGG | 0.426300 | 3:+85178527 | None:intergenic |
CTTTCTGGAAACTCTTCAAC+TGG | 0.426995 | 3:+85175541 | None:intergenic |
GCTGGATTGTTCACGGCATA+TGG | 0.429292 | 3:+85175604 | None:intergenic |
TTCCATAGCTGGATTGTTCA+CGG | 0.431515 | 3:+85175597 | None:intergenic |
AAAGCTTATACCAAACGAAT+AGG | 0.433676 | 3:+85176891 | None:intergenic |
AAAGGTTCAAACTTTGAAGT+TGG | 0.439652 | 3:-85178419 | MsaT015290.1:CDS |
ATCTGCTGAAAACTTTCCTC+TGG | 0.440653 | 3:+85176944 | None:intergenic |
GGTCAATTGATTGAGATATG+AGG | 0.446208 | 3:+85178502 | None:intergenic |
AATTTCATCATCCAAAGAAC+CGG | 0.447322 | 3:-85175453 | MsaT015290.1:CDS |
TCTTCAGCTTCGGGCCTCAA+TGG | 0.453982 | 3:+85178080 | None:intergenic |
ATGATAATGTGGTGAGTGAT+TGG | 0.454378 | 3:-85178166 | MsaT015290.1:CDS |
GTGAGTGGAATTGATGATAA+AGG | 0.457463 | 3:-85178302 | MsaT015290.1:CDS |
AAGGCAGACCCTTGTCACTT+AGG | 0.458239 | 3:+85175407 | None:intergenic |
ATCATAATTTCACCGACTCC+AGG | 0.458700 | 3:-85176539 | MsaT015290.1:CDS |
GAAAGATGAGGATGGAATTG+AGG | 0.460065 | 3:-85178444 | MsaT015290.1:CDS |
GAAATTATGATTGGCGCAAA+AGG | 0.463542 | 3:+85176551 | None:intergenic |
GCTGTTCTAGAATTTGATAA+GGG | 0.467346 | 3:-85178386 | MsaT015290.1:CDS |
CCCTTGTCACTTAGGTTGCA+TGG | 0.470112 | 3:+85175415 | None:intergenic |
GACAGTATTATTCAAGATCT+GGG | 0.475323 | 3:-85177004 | MsaT015290.1:intron |
CATCAAGTTCATGATGATGA+TGG | 0.477201 | 3:-85178218 | MsaT015290.1:CDS |
GAACTTCGGGGAGAAGCCCC+TGG | 0.478122 | 3:+85176521 | None:intergenic |
AACCGGTGCGCATGTAATAA+GGG | 0.486519 | 3:+85176741 | None:intergenic |
TCTGAAGCTCATCATCAAGT+TGG | 0.490964 | 3:+85178480 | None:intergenic |
CCCGATCCTACATCTGTTGG+AGG | 0.492082 | 3:-85176683 | MsaT015290.1:CDS |
CTGAAGCTCATCATCAAGTT+GGG | 0.493894 | 3:+85178481 | None:intergenic |
AGTATTGAGGAGGCTGGAAG+TGG | 0.494418 | 3:-85175150 | MsaT015290.1:CDS |
CATCCCGATCCTACATCTGT+TGG | 0.500007 | 3:-85176686 | MsaT015290.1:CDS |
ATCCATTCCAGTCAGAACTT+CGG | 0.504723 | 3:+85176507 | None:intergenic |
CCCTGTTTGGAGAAGAAACC+AGG | 0.508022 | 3:-85177997 | MsaT015290.1:intron |
GGATTTAAATTTGCAATCCC+CGG | 0.510053 | 3:+85175483 | None:intergenic |
GTCAATTGATTGAGATATGA+GGG | 0.510110 | 3:+85178503 | None:intergenic |
TGATAACGTCCAGGCATAGT+TGG | 0.516040 | 3:+85175198 | None:intergenic |
CACAAACTCGGCTAGTATTG+AGG | 0.521153 | 3:-85175163 | MsaT015290.1:CDS |
CTTCTCCCCGAAGTTCTGAC+TGG | 0.521361 | 3:-85176514 | MsaT015290.1:CDS |
CCCTCCAACAGATGTAGGAT+CGG | 0.524928 | 3:+85176682 | None:intergenic |
TCCATTACCATATCCTAAAG+TGG | 0.526454 | 3:+85176652 | None:intergenic |
TAGATGATTGTGACACGTCT+TGG | 0.526550 | 3:+85176615 | None:intergenic |
TGATGAGCTTCAGAACAAGT+TGG | 0.527576 | 3:-85178471 | MsaT015290.1:CDS |
GGAGTCGGTGAAATTATGAT+TGG | 0.532435 | 3:+85176542 | None:intergenic |
TGGATGATGAAATTTGCAAT+GGG | 0.532458 | 3:+85175462 | None:intergenic |
TCGGCTAGTATTGAGGAGGC+TGG | 0.532916 | 3:-85175156 | MsaT015290.1:CDS |
AGGAGAAAGAGATGAATTGG+AGG | 0.535415 | 3:-85177738 | MsaT015290.1:CDS |
TTGGATTTGAAAGATGAGGA+TGG | 0.538154 | 3:-85178452 | MsaT015290.1:CDS |
CCTCCAACAGATGTAGGATC+GGG | 0.539485 | 3:+85176683 | None:intergenic |
TCATAATTTCACCGACTCCA+GGG | 0.539855 | 3:-85176538 | MsaT015290.1:CDS |
CAAGTTGGATTTGAAAGATG+AGG | 0.539987 | 3:-85178456 | MsaT015290.1:CDS |
TTGGATGATGAAATTTGCAA+TGG | 0.544786 | 3:+85175461 | None:intergenic |
CGGGGAGAAGCCCCTGGAGT+CGG | 0.550896 | 3:+85176527 | None:intergenic |
CAGGATGATGATTGGAAACA+GGG | 0.550924 | 3:+85178528 | None:intergenic |
TGCCGTGAACAATCCAGCTA+TGG | 0.554540 | 3:-85175599 | MsaT015290.1:CDS |
GGTTGGAGTGGTGATTATGA+TGG | 0.555762 | 3:-85178197 | MsaT015290.1:CDS |
TCATACCCTCCAACAGATGT+AGG | 0.560380 | 3:+85176677 | None:intergenic |
CCCCGAAGTTCTGACTGGAA+TGG | 0.564246 | 3:-85176509 | MsaT015290.1:CDS |
ATCAAGCCAGATAGAATGCA+AGG | 0.564984 | 3:-85177711 | MsaT015290.1:intron |
TGCCCTTATTACATGCGCAC+CGG | 0.565218 | 3:-85176743 | MsaT015290.1:CDS |
GGGGCGGTAGGTTTATCGGG+TGG | 0.565245 | 3:+85175220 | None:intergenic |
ATTGAGGAGGCTGGAAGTGG+AGG | 0.565408 | 3:-85175147 | MsaT015290.1:CDS |
GGAGTGGTGATTATGATGGT+TGG | 0.569129 | 3:-85178193 | MsaT015290.1:CDS |
TCCACTTTAGGATATGGTAA+TGG | 0.572990 | 3:-85176653 | MsaT015290.1:CDS |
ACAATCCTCTCACACAAACT+CGG | 0.577005 | 3:-85175175 | MsaT015290.1:CDS |
CTTATACCAAACGAATAGGT+AGG | 0.578718 | 3:+85176895 | None:intergenic |
ATCTGCCACAGTATGTGAGA+AGG | 0.580537 | 3:-85178252 | MsaT015290.1:CDS |
CCTGGTTTCTTCTCCAAACA+GGG | 0.582322 | 3:+85177997 | None:intergenic |
GATTGTTGAGACGGTTCCAT+TGG | 0.582618 | 3:+85178593 | None:intergenic |
ACTAGCCGAGTTTGTGTGAG+AGG | 0.582786 | 3:+85175170 | None:intergenic |
CATAATTTCACCGACTCCAG+GGG | 0.587604 | 3:-85176537 | MsaT015290.1:CDS |
AAATAACTTACAGGTCTCAA+AGG | 0.588071 | 3:+85175388 | None:intergenic |
AAACTGCATTCAGGTTCACC+AGG | 0.589001 | 3:+85175517 | None:intergenic |
GAGTGATTGGATTGAGAATG+AGG | 0.592997 | 3:-85178153 | MsaT015290.1:CDS |
GAGGATTGTTGATAACGTCC+AGG | 0.597566 | 3:+85175189 | None:intergenic |
TGTGATTGAGATTGTTGAGA+CGG | 0.598910 | 3:+85178584 | None:intergenic |
ACAGTATGTGAGAAGGGACA+AGG | 0.601001 | 3:-85178245 | MsaT015290.1:CDS |
GGGTGGTCATACTTACAAGC+TGG | 0.604093 | 3:+85175237 | None:intergenic |
ACAGTATTATTCAAGATCTG+GGG | 0.604261 | 3:-85177003 | MsaT015290.1:intron |
TCTGCCACAGTATGTGAGAA+GGG | 0.604844 | 3:-85178251 | MsaT015290.1:CDS |
CAGTATTATTCAAGATCTGG+GGG | 0.613736 | 3:-85177002 | MsaT015290.1:CDS |
CCAAACGAATAGGTAGGCCA+AGG | 0.617276 | 3:+85176901 | None:intergenic |
ATAACGTCCAGGCATAGTTG+GGG | 0.618044 | 3:+85175200 | None:intergenic |
TATGTTGATGAAAGAAGCAA+TGG | 0.625149 | 3:-85178119 | MsaT015290.1:CDS |
AAGTTCATGATGATGATGGT+TGG | 0.628126 | 3:-85178214 | MsaT015290.1:CDS |
ATTGAGAATGAGGTGGTGAG+TGG | 0.632045 | 3:-85178143 | MsaT015290.1:CDS |
TGTAAATTTGATCACACCAG+AGG | 0.632238 | 3:-85176960 | MsaT015290.1:CDS |
TTCACGGCATATGGTGAAGG+TGG | 0.632618 | 3:+85175613 | None:intergenic |
TCCATGCAACCTAAGTGACA+AGG | 0.634773 | 3:-85175416 | MsaT015290.1:CDS |
GTTGATGAAAGAAGCAATGG+TGG | 0.638205 | 3:-85178116 | MsaT015290.1:CDS |
CAACTGGTGTATGTTTATGA+CGG | 0.640101 | 3:+85175557 | None:intergenic |
CCGATCCTACATCTGTTGGA+GGG | 0.641989 | 3:-85176682 | MsaT015290.1:CDS |
TAACGTCCAGGCATAGTTGG+GGG | 0.648794 | 3:+85175201 | None:intergenic |
TTGTTCACGGCATATGGTGA+AGG | 0.648890 | 3:+85175610 | None:intergenic |
TTGTCCCTTCTCACATACTG+TGG | 0.652329 | 3:+85178247 | None:intergenic |
GAGCTGAACAGTATCCATTG+AGG | 0.652512 | 3:-85178094 | MsaT015290.1:CDS |
GAAGAGTTTCCAGAAAGACC+TGG | 0.657339 | 3:-85175535 | MsaT015290.1:CDS |
ACTGATGCTGATGAAGTGAG+TGG | 0.667560 | 3:-85178317 | MsaT015290.1:CDS |
TGGTTGGAATGATGATAATG+TGG | 0.669541 | 3:-85178177 | MsaT015290.1:CDS |
TGATGAGAATGTGAATGAGA+AGG | 0.672400 | 3:-85178345 | MsaT015290.1:CDS |
CCATGCAACCTAAGTGACAA+GGG | 0.676957 | 3:-85175415 | MsaT015290.1:CDS |
CATGATGATGATGGTTGGAG+TGG | 0.678716 | 3:-85178209 | MsaT015290.1:CDS |
CAGTATGTGAGAAGGGACAA+GGG | 0.679158 | 3:-85178244 | MsaT015290.1:CDS |
AGGATGATGATTGGAAACAG+GGG | 0.702661 | 3:+85178529 | None:intergenic |
AAACTCGGCTAGTATTGAGG+AGG | 0.710931 | 3:-85175160 | MsaT015290.1:CDS |
TTGTCACTTAGGTTGCATGG+AGG | 0.747188 | 3:+85175418 | None:intergenic |
CCATTCCAGTCAGAACTTCG+GGG | 0.756262 | 3:+85176509 | None:intergenic |
TGATTGGATTGAGAATGAGG+TGG | 0.762353 | 3:-85178150 | MsaT015290.1:CDS |
TTTCTGGTAGAAGACCATGG+GGG | 0.864818 | 3:+85176590 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 85175125 | 85178612 | 85175125 | ID=MsaG015290 |
Chr3 | mRNA | 85175125 | 85178612 | 85175125 | ID=MsaT015290.1;Parent=MsaG015290 |
Chr3 | exon | 85175125 | 85175310 | 85175125 | ID=MsaT015290.1.exon6;Parent=MsaT015290.1 |
Chr3 | CDS | 85175125 | 85175310 | 85175125 | ID=cds.MsaT015290.1;Parent=MsaT015290.1 |
Chr3 | exon | 85175399 | 85175668 | 85175399 | ID=MsaT015290.1.exon5;Parent=MsaT015290.1 |
Chr3 | CDS | 85175399 | 85175668 | 85175399 | ID=cds.MsaT015290.1;Parent=MsaT015290.1 |
Chr3 | exon | 85176502 | 85176777 | 85176502 | ID=MsaT015290.1.exon4;Parent=MsaT015290.1 |
Chr3 | CDS | 85176502 | 85176777 | 85176502 | ID=cds.MsaT015290.1;Parent=MsaT015290.1 |
Chr3 | exon | 85176902 | 85177021 | 85176902 | ID=MsaT015290.1.exon3;Parent=MsaT015290.1 |
Chr3 | CDS | 85176902 | 85177021 | 85176902 | ID=cds.MsaT015290.1;Parent=MsaT015290.1 |
Chr3 | exon | 85177712 | 85177777 | 85177712 | ID=MsaT015290.1.exon2;Parent=MsaT015290.1 |
Chr3 | CDS | 85177712 | 85177777 | 85177712 | ID=cds.MsaT015290.1;Parent=MsaT015290.1 |
Chr3 | exon | 85177998 | 85178612 | 85177998 | ID=MsaT015290.1.exon1;Parent=MsaT015290.1 |
Chr3 | CDS | 85177998 | 85178612 | 85177998 | ID=cds.MsaT015290.1;Parent=MsaT015290.1 |
Gene Sequence |
Protein sequence |