AlfalfaGEDB | MsaG015291

M. sativa ssp. caerulea / MsaG015291

KEGG: -
GO: GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010605 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0099402 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015291	XP_013460954.1	96.565	1572	49	1	1	1567	1	1572	0.0	3159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015291	sp\|Q9STM3\|REF6_ARATH	53.152	1031	386	17	1	992	3	975	0.0	991
MsaG015291	sp\|Q9STM3\|REF6_ARATH	36.552	435	210	5	1172	1564	946	1356	2.62e-67	254

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015291	tr\|A0A072V0U6\|A0A072V0U6_MEDTR	96.565	1572	49	1	1	1567	1	1572	0.0	3159

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015291	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG015291	0.831703	2.593195e-55	7.883153e-53
MsaG000379	MsaG015291	0.838786	4.304134e-57	1.617672e-54
MsaG000479	MsaG015291	0.823011	3.074939e-53	7.327965e-51
MsaG000520	MsaG015291	0.825125	9.863661e-54	2.489735e-51
MsaG000583	MsaG015291	0.811832	9.867425e-51	1.762290e-48
MsaG000842	MsaG015291	0.826755	4.060712e-54	1.072414e-51
MsaG001246	MsaG015291	0.800290	2.582400e-48	3.514374e-46
MsaG001828	MsaG015291	0.809400	3.290982e-50	5.539188e-48
MsaG002061	MsaG015291	0.821583	6.573009e-53	1.507445e-50
MsaG002065	MsaG015291	0.850500	3.108168e-60	1.713814e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015291	MtrunA17_Chr3g0116441	96.565	1572	49	1	1	1567	1	1572	0.0	3159
MsaG015291	MtrunA17_Chr1g0199511	45.669	381	169	8	173	552	292	635	7.47e-99	350
MsaG015291	MtrunA17_Chr1g0199511	52.353	170	56	2	1394	1563	1334	1478	5.51e-50	195
MsaG015291	MtrunA17_Chr1g0199511	43.147	197	71	4	5	162	3	197	1.58e-38	158
MsaG015291	MtrunA17_Chr1g0199511	37.600	125	74	3	761	884	700	821	2.06e-16	85.9
MsaG015291	MtrunA17_Chr5g0410721	43.646	362	186	7	11	366	82	431	1.16e-80	285
MsaG015291	MtrunA17_Chr1g0164731	37.330	367	194	8	11	362	38	383	2.71e-66	236
MsaG015291	MtrunA17_Chr1g0164761	35.912	362	174	11	18	362	8	328	7.95e-59	213
MsaG015291	MtrunA17_Chr2g0303101	33.580	405	196	10	18	360	52	445	1.32e-53	205
MsaG015291	MtrunA17_Chr8g0380981	34.988	403	191	11	18	359	43	435	5.63e-52	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015291	AT3G48430.1	53.152	1031	386	17	1	992	3	975	0.0	991
MsaG015291	AT3G48430.1	36.552	435	210	5	1172	1564	946	1356	2.67e-68	254
MsaG015291	AT3G48430.2	43.323	674	311	14	332	992	1	616	1.69e-142	465
MsaG015291	AT3G48430.2	36.552	435	210	5	1172	1564	587	997	2.68e-68	251
MsaG015291	AT5G04240.1	57.812	256	101	2	173	421	260	515	4.89e-94	334
MsaG015291	AT5G04240.1	66.055	109	37	0	1452	1560	1229	1337	3.30e-44	177
MsaG015291	AT5G04240.1	44.324	185	73	3	5	161	3	185	1.89e-37	154
MsaG015291	AT5G04240.1	33.333	102	68	0	758	859	647	748	2.65e-13	75.9
MsaG015291	AT5G46910.1	43.681	364	183	9	7	362	92	441	1.26e-78	278
MsaG015291	AT5G46910.2	43.681	364	183	9	7	362	92	441	1.45e-78	274

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Find 368 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTGTTGCTGGCAAA+TGG	0.533727	3:-85199918	MsaT015291.1:CDS
AAAATTAGTACCTGCAGCAT+GGG	0.539123	3:+85205078	None:intergenic
AAACAACCTCACAGAGTAGA+CGG	0.613019	3:-85199720	MsaT015291.1:CDS
AAACCTAGAACACAAAGCTA+AGG	0.615764	3:+85203519	None:intergenic
AAACCTCAACAAAGACCCTT+TGG	0.483798	3:+85206621	None:intergenic
AAACCTTCTTGGCCGAGGAC+TGG	0.407990	3:+85199633	None:intergenic
AAACGACCCGTTTGGCAGAG+TGG	0.583344	3:-85206901	MsaT015291.1:CDS
AAACGGGTCGTTTAACGGGT+CGG	0.519347	3:+85206911	None:intergenic
AAAGAAGGACAGTTAAAGTC+AGG	0.522037	3:-85198994	MsaT015291.1:CDS
AAAGAGAGTCTCAAAAGCTC+AGG	0.499779	3:-85198396	MsaT015291.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	85197932	85207199	85197932	ID=MsaG015291
Chr3	mRNA	85197932	85207199	85197932	ID=MsaT015291.1;Parent=MsaG015291
Chr3	exon	85197932	85200270	85197932	ID=MsaT015291.1.exon7;Parent=MsaT015291.1
Chr3	CDS	85197932	85200270	85197932	ID=cds.MsaT015291.1;Parent=MsaT015291.1
Chr3	exon	85201075	85201651	85201075	ID=MsaT015291.1.exon6;Parent=MsaT015291.1
Chr3	CDS	85201075	85201651	85201075	ID=cds.MsaT015291.1;Parent=MsaT015291.1
Chr3	exon	85202576	85203269	85202576	ID=MsaT015291.1.exon5;Parent=MsaT015291.1
Chr3	CDS	85202576	85203269	85202576	ID=cds.MsaT015291.1;Parent=MsaT015291.1
Chr3	exon	85203523	85203673	85203523	ID=MsaT015291.1.exon4;Parent=MsaT015291.1
Chr3	CDS	85203523	85203673	85203523	ID=cds.MsaT015291.1;Parent=MsaT015291.1
Chr3	exon	85203821	85203888	85203821	ID=MsaT015291.1.exon3;Parent=MsaT015291.1
Chr3	CDS	85203821	85203888	85203821	ID=cds.MsaT015291.1;Parent=MsaT015291.1
Chr3	exon	85205089	85205167	85205089	ID=MsaT015291.1.exon2;Parent=MsaT015291.1
Chr3	CDS	85205089	85205167	85205089	ID=cds.MsaT015291.1;Parent=MsaT015291.1
Chr3	exon	85206404	85207199	85206404	ID=MsaT015291.1.exon1;Parent=MsaT015291.1
Chr3	CDS	85206404	85207199	85206404	ID=cds.MsaT015291.1;Parent=MsaT015291.1

Gene Sequence

>MsaT015291.1

ATGGCAGAATCAAACGGCGACGTATTCCCATGGTTAAAATCCATGCCAGTAGCACCCGAATACCGACCCACTCCAGCTGAATTCGAAGATCCAATCGCATACATTTTCAAGATCGAAAACGAAGCTTCCAAATTCGGAATCTGCAAAATTATCCCTCCTTTTCCACCTTCTTCCAAAAAAACCACCATCTCTAACCTAAACCGTTCATTCCCCAACTCCACATTCACCACCCGTCAACAACAGATCGGGTTCTGTCCCCGTAAACCCCGACCCGTTAAACGACCCGTTTGGCAGAGTGGGGACCACTACTCTTTCTCTGAGTTTGAAGCCAAAGCAAAATGGTTTGAAAGAAGTTACATGAACAAGAAGAAGAAAAACAGTAACAGTGCTCTTGAAATAGAGACATTGTTCTGGAAAGCTACGGTTGATAAACCGTTTTCTGTTGAGTATGCTAATGATATGCCAGGTTCTGCTTTCGCCGACACGGTGGAGAATAATAATAAACCGTTTTCTTCTGTTGCGAATAGTGCTTGGAATATGAGAAGGGTTTCAAGGGCCAAAGGGTCTTTGTTGAGGTTTATGAAGGAAGAGATACCGGGAGTTACTTCTCCTATGGTTTATCTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTGGAGGATCATGATTTGCATAGCTTGAATTATCTTCATATGGGTGCTTCTAAGACTTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGATGTTGTTCGAGTTCATGGTTATGGTGGAGAGATTAACCCTCTTGTTACATTTTCTATTCTTGGTGAGAAGACCACAGTGATGTCACCAGAAGTGTTTATTAGCGCAGGCGTCCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACGGGGTTCAGTCATGGTTTTAATTGTGCAGAGGCGGCAAACATTGCAACACCCGAGTGGTTGAGAGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAACTATTCTCCCATGGTTTCACATTTACAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGGGGAATCAGTGCGGCACCTCGGAGTTCTCGACTTAAAGATAAGAAGAAGGGTGAAGGAGAAGCTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAAAACAATGATCTGCTTCATGTCCTCGGAAATGAGTCTTCTGTAGTACTTCTTCCTCGCAACTCAGTTGACATCTCTAGTTGCTCAAAATTACGTGTTGGATGCCGGCCACCAAAAGTGAACCCTGGATTTTCCTTTAATGTATGCAATTCTGAGGGACTGAATTCATCAAAAGGTTTTGTTTCTGATGATCTGGTATTCGACAGGAATCGCGGAATTGCCCAAGAAAAAAACTTATGTTCTGTGAAAGATGAATTTACTCTGTTGTGCGAAGGGAAGGGGATTTCCTCGTTGGATGCAAATGGTAACAAATCCCCTTCAAGTTCTAAACAACTTCAAAGAGACAGTGAAAGTGAGACTAGTCAAGGAGATGGATTGTCAGAGCAGAGACTGTTTTCGTGTGTCACGTGTGGACTATTAAACTTTTCATGTGTTGCTATTGTACAGCCTAGAGAGCCAGCAGCTAGGTATCTTATGTCTGCTGATTGCAGCTTCTTTAATGATTGGGTTGCTGCCTCTGGATTACCTGGTAGCAATAAATATACTGCTCCCCATGAAGATGCACATATTCCCGAGCCAAATATGTATAAAAATGCCCAAGAAGAGGCTTTACATTCTGAAGGAGAAAATGGCAATTCAGCAGCTACAGCTCTTGCATTATTGGCTTCAGCGTATGGAAGTTCTTCTGACTCTGAGGAAGATGCAGTTGACGGCCATGAATCAAATGCAATAAACTCTACATCAGAAAGTTTGCCTTCTAATTTTTGTGATTCCAATGATAATCCCATGACAATACTTGATAAAGATGATACCCTTTCAGAGAGTGCCAGCTATGAAGCACACAGAAATGAGTGTAATTTGAGTCATCATCCTTGGGATCAATCTTTTGAGGAACAGGATTATAAAATCACTTCAGGGGCTGCATTTGAAAATACAAGGGCAATGCCTTATTCCACCACATATAGTTCCCGTGATACTAATGACGCTGAGAAGTCATTGTCAATCGAGGCAATTGTTCCTGTAAATCATAAAAATGTTTTACTGGTACCACAATGCGATGAAGAGTCGTCTAGAATGCATGTATTCTGTCTAGAGCATGCTGTAGAAGCAGAGCAGCAACTCCGCCCAATAGGTGGAGCCCACATATTGCTCTTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCACAGTTGGTGGCAGAAGATTTGGGGATTGATTGTACGTGGAAGAATATTGCCTACAGGCATGGCACCAAGGAGGATGAGAAAAGGATCCAGTCAGCTCTGGATAGTGAGGAAGCGAGTCTCGGGAATGGGGACTGGACTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAGTCTTAGCCGCTCTCCCCTTTATAGCAAGCAAATGCCTTACAATTCTGTTATATATTATGCATTCGGTCGTAGCTCTCCAGCAAGCTCACCGATAGAACCAAAGGTTTATCAGAGAAGGGCTGACAAGCAGAAAAAGGTTGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATCCCCTTTTAGCAATAAGGGATTCTGAAGATGTTGAGGATGAGAAAAGTTTACGTGGATTGGTATTGCCTGATGTGAAAATTGAGAGATTGGGAAGTACCCCCAAAACTGCAACGGCTATCTCAAAATCAGGCAGGAAAAGGAAAACAACCTCACAGAGTAGACGGCGAATCAGGAAAGGAAATTTCGATGATAAGGATGTGGTTTTGGATGATTCTGCTGAAGATAAACCCAGTCCTCGGCCAAGAAGGTTTGTTAGAAGCAAGCAAGCTAAGGGTGTTGAGAAAGATGGTGCAGCTTTGCAGAGGAACTGTTCTCCATATCATCATAGAAAACATATAAGCAAACAAACCAATTGCACTGAAAGTGATGTAGTTTCTGATGATTCGATTGATGATGATTGCATGCAAAATAGATGGAGTTTTAATGTCAAAAAAGCTAAATTTGCTGGCAATGAAGTGGTTTCAGATGATGCAGTGGACTATGATTCTGATTGTAATCGAATGGAAGAACTTAGAAGCAATCAAGATGAAGATACAGAGAGAGACTCAGTTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCCGTTGCACAGAATGACTTCCAGAAGCAAGCATGCCGACTATATTGGTGAAGATGCAATTTCTGATGACCATATGGAGAGTGGTTGTCAGAAGCAGAAAAGGAGAATTGCTAAAAGCTGGCAAGGCAAATACCTTGCTGAAAAAGATTCAGTGATATCAGACGACCAACTGGAGCCGAACAAGCAGAAGCAGCGACGGAGTAATCCTAAAAGTAGGAAAGCCAGAAACCTTGCCAAAGAGGATACTGTGTCAGACGATCAAACAAATGTCTATCGTCGCAAGTACCAAAGAAGGACAGTTAAAGTCAGGCAAGCCAAATGTGTAGCAGAGGAAGATGTAATGTCTGACGACCAATTGGAGGTTTCCTATCAAAGGCATAAAACAGGTATTTCTAGAAGGAAGAACAAAGGCATTGATAGAGTGAAAAATGAAATGTCTGATGATCAACTGGATGATCACTTTCAGAAGCAGCAAAGAAAAAATCCTAGGAGCAGGCGCATTAAACAGACTGATGAGGAAGATATCGATGACTCAGCTGACAATAATGCTCATCTGCTGCATAGAACCCCTAAAAGGAAGAAAGCTAAATGCAAGGATGAAGATCATATGATTTTAGATAACGAAATGGAAGATGATTCTCTTCAGCAGCGCAAGAGAACTCTTCCAAGTAAACAATCCAAACGAAGGACAGTTAAACAGATGAAACAATCCAAAACTCTCCAAATGAAAAACCAGACACCTCAGCCAGTGAAACGAGGAGCTCAGAAGAATGCTAAGCAAGTAAAGCAGCCGTCTCATTTGCGGAGTAAACATTCTGACAACTCCAGAGAGCCTAGTATAGATATGGAAGAGGATGAAGAAGGCGGACCTAGTACACGCCTTAGAAAGAGAGTCTCAAAAGCTCAGGCGTCTGAAGTAAAATCAAAAGACAGGCAAACCAACAGGAAAAGGGCAAATGATGTTGCAGCTGACAAGGTTTCAGCTTGCAATCCCAAATCAGAGGACGAGGAAGCAGAATATCAGTGTGACATTGAGGGATGCACCATGAGCTTCGAGTCAAAAGAAGAGTTGGTGCATCATAAGAGAAACATCTGTCCAGTACAGGGTTGCGGAAAAAAGTTTTTCTCGCACAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGTCCTCTGAAGTGCCCCTGGAAGGGTTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACCGAGCATATTCGAGTTCACACCGGTGCACGACCTTATGCATGTGCCGAGCCAGGTTGTGGTCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTTAGCGAAGAAGATTCGTCAATAG

Protein sequence

>MsaT015291.1

MAESNGDVFPWLKSMPVAPEYRPTPAEFEDPIAYIFKIENEASKFGICKIIPPFPPSSKKTTISNLNRSFPNSTFTTRQQQIGFCPRKPRPVKRPVWQSGDHYSFSEFEAKAKWFERSYMNKKKKNSNSALEIETLFWKATVDKPFSVEYANDMPGSAFADTVENNNKPFSSVANSAWNMRRVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCAEAANIATPEWLRVAKDAAIRRASINYSPMVSHLQLLYDLALALCSRIPGGISAAPRSSRLKDKKKGEGEAVIKELFVQDVLQNNDLLHVLGNESSVVLLPRNSVDISSCSKLRVGCRPPKVNPGFSFNVCNSEGLNSSKGFVSDDLVFDRNRGIAQEKNLCSVKDEFTLLCEGKGISSLDANGNKSPSSSKQLQRDSESETSQGDGLSEQRLFSCVTCGLLNFSCVAIVQPREPAARYLMSADCSFFNDWVAASGLPGSNKYTAPHEDAHIPEPNMYKNAQEEALHSEGENGNSAATALALLASAYGSSSDSEEDAVDGHESNAINSTSESLPSNFCDSNDNPMTILDKDDTLSESASYEAHRNECNLSHHPWDQSFEEQDYKITSGAAFENTRAMPYSTTYSSRDTNDAEKSLSIEAIVPVNHKNVLLVPQCDEESSRMHVFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAQLVAEDLGIDCTWKNIAYRHGTKEDEKRIQSALDSEEASLGNGDWTVKLGINLFYSASLSRSPLYSKQMPYNSVIYYAFGRSSPASSPIEPKVYQRRADKQKKVVAGKWCGKVWMSNQVHPLLAIRDSEDVEDEKSLRGLVLPDVKIERLGSTPKTATAISKSGRKRKTTSQSRRRIRKGNFDDKDVVLDDSAEDKPSPRPRRFVRSKQAKGVEKDGAALQRNCSPYHHRKHISKQTNCTESDVVSDDSIDDDCMQNRWSFNVKKAKFAGNEVVSDDAVDYDSDCNRMEELRSNQDEDTERDSVSEDSLDVGSLPLHRMTSRSKHADYIGEDAISDDHMESGCQKQKRRIAKSWQGKYLAEKDSVISDDQLEPNKQKQRRSNPKSRKARNLAKEDTVSDDQTNVYRRKYQRRTVKVRQAKCVAEEDVMSDDQLEVSYQRHKTGISRRKNKGIDRVKNEMSDDQLDDHFQKQQRKNPRSRRIKQTDEEDIDDSADNNAHLLHRTPKRKKAKCKDEDHMILDNEMEDDSLQQRKRTLPSKQSKRRTVKQMKQSKTLQMKNQTPQPVKRGAQKNAKQVKQPSHLRSKHSDNSREPSIDMEEDEEGGPSTRLRKRVSKAQASEVKSKDRQTNRKRANDVAADKVSACNPKSEDEEAEYQCDIEGCTMSFESKEELVHHKRNICPVQGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHLAKKIRQ*