AlfalfaGEDB | MsaG015364

M. sativa ssp. caerulea / MsaG015364

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015364	XP_003601210.2	100.000	191	0	0	1	191	1	191	1.04e-137	392

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015364	sp\|Q9FML4\|LOB_ARATH	75.000	148	19	2	1	130	1	148	3.49e-72	219

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015364	tr\|H2D439\|H2D439_MEDTR	100.000	191	0	0	1	191	1	191	4.96e-138	392

TFs/TRs:

Gene ID	Type	Classification
MsaG015364	TF	LOB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000306	MsaG015364	0.810309	2.102653e-50	3.617872e-48
MsaG000309	MsaG015364	0.835277	3.358916e-56	1.134448e-53
MsaG000534	MsaG015364	0.836529	1.623162e-56	5.692076e-54
MsaG000880	MsaG015364	0.854750	1.930707e-61	1.236215e-58
MsaG000941	MsaG015364	0.807071	1.026228e-49	1.633359e-47
MsaG000998	MsaG015364	0.826225	5.424646e-54	1.411621e-51
MsaG001087	MsaG015364	0.823147	2.859007e-53	6.838347e-51
MsaG001169	MsaG015364	0.807582	8.008260e-50	1.290157e-47
MsaG001278	MsaG015364	0.823102	2.929434e-53	6.998105e-51
MsaG001366	MsaG015364	0.832704	1.469748e-55	4.599651e-53
MsaG001660	MsaG015364	0.818835	2.781766e-52	5.933207e-50
MsaG002214	MsaG015364	0.802256	1.026880e-48	1.461169e-46
MsaG002286	MsaG015364	0.819584	1.881390e-52	4.092428e-50
MsaG003192	MsaG015364	0.812165	8.353938e-51	1.504203e-48
MsaG003529	MsaG015364	0.824738	1.215811e-53	3.036468e-51
MsaG003679	MsaG015364	0.850797	2.567135e-60	1.430106e-57
MsaG003998	MsaG015364	0.815204	1.803195e-51	3.503823e-49
MsaG003912	MsaG015364	0.837165	1.118687e-56	3.999351e-54
MsaG004041	MsaG015364	0.840483	1.565103e-57	6.203296e-55
MsaG004101	MsaG015364	0.805489	2.203018e-49	3.377967e-47
MsaG004225	MsaG015364	0.813637	3.990129e-51	7.453497e-49
MsaG004185	MsaG015364	0.823678	2.151658e-53	5.221302e-51
MsaG004321	MsaG015364	0.803819	4.897213e-49	7.223825e-47
MsaG004361	MsaG015364	0.806100	1.641632e-49	2.553667e-47
MsaG004427	MsaG015364	0.800286	2.587021e-48	3.520372e-46
MsaG004447	MsaG015364	0.803766	5.021623e-49	7.398278e-47
MsaG004648	MsaG015364	0.864541	2.251319e-64	2.088319e-61
MsaG005334	MsaG015364	0.821751	6.011240e-53	1.384838e-50
MsaG005354	MsaG015364	0.821944	5.426611e-53	1.256580e-50
MsaG005602	MsaG015364	0.807230	9.500184e-50	1.517718e-47
MsaG006165	MsaG015364	0.821094	8.513582e-53	1.927424e-50
MsaG006330	MsaG015364	0.828777	1.333836e-54	3.727693e-52
MsaG006387	MsaG015364	0.828997	1.180224e-54	3.318969e-52
MsaG006440	MsaG015364	0.811570	1.124346e-50	1.995159e-48
MsaG006630	MsaG015364	0.816282	1.039990e-51	2.076876e-49
MsaG006728	MsaG015364	0.819259	2.230024e-52	4.809865e-50
MsaG006741	MsaG015364	0.806649	1.259020e-49	1.984083e-47
MsaG006792	MsaG015364	0.808634	4.792907e-50	7.919650e-48
MsaG006886	MsaG015364	0.847627	1.938675e-59	9.694822e-57
MsaG007072	MsaG015364	0.835929	2.301298e-56	7.926226e-54
MsaG007215	MsaG015364	0.803383	6.024923e-49	8.798150e-47
MsaG007240	MsaG015364	0.803228	6.483489e-49	9.434087e-47
MsaG007459	MsaG015364	0.824202	1.623758e-53	3.996435e-51
MsaG007600	MsaG015364	0.804430	3.658555e-49	5.473727e-47
MsaG008105	MsaG015364	0.820377	1.241814e-52	2.758624e-50
MsaG008826	MsaG015364	0.807863	6.982375e-50	1.132592e-47
MsaG008880	MsaG015364	0.831808	2.444105e-55	7.452669e-53
MsaG009007	MsaG015364	0.821629	6.414849e-53	1.473022e-50
MsaG009261	MsaG015364	0.810474	1.937476e-50	3.347174e-48
MsaG009392	MsaG015364	0.802653	8.512125e-49	1.222319e-46
MsaG009477	MsaG015364	0.842040	6.124498e-58	2.550198e-55
MsaG009551	MsaG015364	0.853118	5.669907e-61	3.425684e-58
MsaG009764	MsaG015364	0.820202	1.361388e-52	3.010377e-50
MsaG009787	MsaG015364	0.889650	4.397037e-73	1.272628e-69
MsaG009850	MsaG015364	0.818344	3.589686e-52	7.559286e-50
MsaG010328	MsaG015364	0.825866	6.596123e-54	1.699517e-51
MsaG010372	MsaG015364	0.817592	5.299813e-52	1.094608e-49
MsaG010676	MsaG015364	0.820590	1.110333e-52	2.480368e-50
MsaG011285	MsaG015364	0.813089	5.257842e-51	9.687898e-49
MsaG011348	MsaG015364	0.811371	1.241610e-50	2.192496e-48
MsaG011580	MsaG015364	0.811612	1.100980e-50	1.955720e-48
MsaG012170	MsaG015364	0.806528	1.334865e-49	2.097651e-47
MsaG012446	MsaG015364	0.854056	3.057838e-61	1.910038e-58
MsaG012507	MsaG015364	0.810277	2.135467e-50	3.671465e-48
MsaG012553	MsaG015364	0.832100	2.071147e-55	6.369310e-53
MsaG012586	MsaG015364	0.816923	7.484043e-52	1.519355e-49
MsaG012671	MsaG015364	0.825252	9.208616e-54	2.332446e-51
MsaG012778	MsaG015364	0.810036	2.405945e-50	4.112217e-48
MsaG013803	MsaG015364	0.809498	3.135339e-50	5.290094e-48
MsaG014544	MsaG015364	0.814476	2.610309e-51	4.979744e-49
MsaG014613	MsaG015364	0.810902	1.567271e-50	2.735940e-48
MsaG015081	MsaG015364	0.816605	8.810505e-52	1.774035e-49
MsaG015143	MsaG015364	0.902607	1.898039e-78	1.132123e-74
MsaG015364	MsaG015446	0.800618	2.216093e-48	3.038479e-46
MsaG015364	MsaG015689	0.803189	6.606417e-49	9.604288e-47
MsaG015364	MsaG017088	0.826883	3.786452e-54	1.003547e-51
MsaG015364	MsaG017105	0.809976	2.478300e-50	4.229671e-48
MsaG015364	MsaG017193	0.831056	3.733588e-55	1.113724e-52
MsaG015364	MsaG017274	0.806774	1.185082e-49	1.873105e-47
MsaG015364	MsaG017470	0.814406	2.704928e-51	5.151282e-49
MsaG015364	MsaG017888	0.805164	2.575595e-49	3.919695e-47
MsaG015364	MsaG018113	0.828236	1.799199e-54	4.952727e-52
MsaG015364	MsaG018240	0.816157	1.108444e-51	2.206567e-49
MsaG015364	MsaG018270	0.811757	1.024083e-50	1.825600e-48
MsaG015364	MsaG018595	0.811845	9.804735e-51	1.751639e-48
MsaG015364	MsaG018752	0.827830	2.251194e-54	6.126967e-52
MsaG015364	MsaG018821	0.809698	2.842511e-50	4.818866e-48
MsaG015364	MsaG019132	0.852142	1.073302e-60	6.266083e-58
MsaG015364	MsaG019221	0.809051	3.906629e-50	6.520470e-48
MsaG015364	MsaG019273	0.804950	2.852943e-49	4.320220e-47
MsaG015364	MsaG020062	0.864345	2.591851e-64	2.385554e-61
MsaG015364	MsaG020338	0.808312	5.608157e-50	9.195201e-48
MsaG015364	MsaG020396	0.809245	3.551514e-50	5.955206e-48
MsaG015364	MsaG020402	0.802809	7.907211e-49	1.139477e-46
MsaG015364	MsaG020487	0.823753	2.066359e-53	5.024497e-51
MsaG015364	MsaG020777	0.808000	6.530883e-50	1.062832e-47
MsaG015364	MsaG020787	0.804669	3.263779e-49	4.910149e-47
MsaG015364	MsaG020828	0.805015	2.766303e-49	4.195404e-47
MsaG015364	MsaG021221	0.829948	6.949794e-55	2.008392e-52
MsaG015364	MsaG021380	0.811336	1.263064e-50	2.228531e-48
MsaG015364	MsaG022056	0.836091	2.094885e-56	7.250245e-54
MsaG015364	MsaG022537	0.831392	3.090266e-55	9.308468e-53
MsaG015364	MsaG023066	0.815174	1.831431e-51	3.555880e-49
MsaG015364	MsaG023205	0.813519	4.235600e-51	7.888843e-49
MsaG015364	MsaG023304	0.824280	1.557033e-53	3.840408e-51
MsaG015364	MsaG023396	0.806099	1.642644e-49	2.555158e-47
MsaG015364	MsaG023475	0.800775	2.058500e-48	2.832440e-46
MsaG015364	MsaG023680	0.801828	1.256268e-48	1.770271e-46
MsaG015364	MsaG023723	0.817969	4.361267e-52	9.095650e-50
MsaG015364	MsaG024286	0.833363	1.009817e-55	3.221889e-53
MsaG015364	MsaG024293	0.844863	1.088033e-58	4.963694e-56
MsaG015364	MsaG025492	0.818877	2.721376e-52	5.810804e-50
MsaG015364	MsaG025640	0.801942	1.190804e-48	1.682339e-46
MsaG015364	MsaG025732	0.824937	1.091654e-53	2.741393e-51
MsaG015364	MsaG026579	0.823361	2.550274e-53	6.135539e-51
MsaG015364	MsaG026962	0.807264	9.345982e-50	1.494297e-47
MsaG015364	MsaG027027	0.800343	2.518856e-48	3.432131e-46
MsaG015364	MsaG027093	0.841436	8.825982e-58	3.605001e-55
MsaG015364	MsaG027159	0.813518	4.236405e-51	7.890220e-49
MsaG015364	MsaG027749	0.813935	3.433476e-51	6.461910e-49
MsaG015364	MsaG027950	0.801985	1.166695e-48	1.649902e-46
MsaG015364	MsaG028256	0.851509	1.620250e-60	9.250686e-58
MsaG015364	MsaG028250	0.813611	4.041858e-51	7.545275e-49
MsaG015364	MsaG028286	0.832290	1.859296e-55	5.749012e-53
MsaG015364	MsaG028292	0.819322	2.158330e-52	4.662894e-50
MsaG015364	MsaG028481	0.804720	3.184965e-49	4.797270e-47
MsaG015364	MsaG029117	0.838258	5.884111e-57	2.175259e-54
MsaG015364	MsaG029178	0.814940	2.062841e-51	3.981591e-49
MsaG015364	MsaG029626	0.814928	2.075752e-51	4.005298e-49
MsaG015364	MsaG029694	0.826995	3.560298e-54	9.465541e-52
MsaG015364	MsaG030115	0.815927	1.246857e-51	2.467574e-49
MsaG015364	MsaG031201	0.832684	1.486934e-55	4.650493e-53
MsaG015364	MsaG031652	0.812946	5.648898e-51	1.037128e-48
MsaG015364	MsaG033700	0.860782	3.199948e-63	2.563465e-60
MsaG015364	MsaG033815	0.807236	9.475641e-50	1.513990e-47
MsaG015364	MsaG033858	0.800331	2.533619e-48	3.451251e-46
MsaG015364	MsaG033863	0.810709	1.724580e-50	2.996386e-48
MsaG015364	MsaG034444	0.832044	2.138440e-55	6.565546e-53
MsaG015364	MsaG034673	0.825055	1.024255e-53	2.580475e-51
MsaG015364	MsaG034837	0.800157	2.747430e-48	3.727802e-46
MsaG015364	MsaG035128	0.806402	1.418585e-49	2.222585e-47
MsaG015364	MsaG035149	0.815922	1.250479e-51	2.474404e-49
MsaG015364	MsaG035162	0.816246	1.059510e-51	2.113864e-49
MsaG015364	MsaG035749	0.823620	2.219047e-53	5.376424e-51
MsaG015364	MsaG036509	0.829664	8.144052e-55	2.334393e-52
MsaG015364	MsaG036523	0.806896	1.116981e-49	1.770476e-47
MsaG015364	MsaG039166	0.859748	6.547897e-63	5.042402e-60
MsaG015364	MsaG039438	0.810496	1.916764e-50	3.313103e-48
MsaG015364	MsaG040381	0.836527	1.625278e-56	5.699079e-54
MsaG015364	MsaG040429	0.830797	4.319120e-55	1.278811e-52
MsaG015364	MsaG040474	0.839449	2.902807e-57	1.113764e-54
MsaG015364	MsaG040517	0.868918	9.246933e-66	1.024246e-62
MsaG015364	MsaG040583	0.808291	5.667976e-50	9.288513e-48
MsaG015364	MsaG042116	0.812035	8.917265e-51	1.600535e-48
MsaG015364	MsaG042142	0.831972	2.226534e-55	6.821550e-53
MsaG015364	MsaG042898	0.813245	4.861634e-51	8.992557e-49
MsaG015364	MsaG043392	0.819553	1.912611e-52	4.156932e-50
MsaG015364	MsaG043506	0.825165	9.653725e-54	2.439386e-51
MsaG015364	MsaG043571	0.827897	2.168745e-54	5.913730e-52
MsaG015364	MsaG044092	0.871161	1.722226e-66	2.096290e-63
MsaG015364	MsaG044333	0.862511	9.529178e-64	8.158715e-61
MsaG015364	MsaG044623	0.821750	6.015312e-53	1.385728e-50
MsaG015364	MsaG044627	0.819325	2.154015e-52	4.654086e-50
MsaG015364	MsaG044880	0.848938	8.446301e-60	4.414999e-57
MsaG015364	MsaG045060	0.802288	1.011525e-48	1.440418e-46
MsaG015364	MsaG045107	0.866428	5.765087e-65	5.767306e-62
MsaG015364	MsaG045108	0.840927	1.198888e-57	4.818527e-55
MsaG015364	MsaG045536	0.810188	2.231787e-50	3.828708e-48
MsaG015364	MsaG045566	0.813486	4.305135e-51	8.011549e-49
MsaG015364	MsaG045740	0.806436	1.395834e-49	2.188726e-47
MsaG015364	MsaG045873	0.825213	9.401851e-54	2.378911e-51
MsaG015364	MsaG046105	0.814311	2.837600e-51	5.391060e-49
MsaG015364	MsaG046926	0.828121	1.917134e-54	5.260565e-52
MsaG015364	MsaG000837	0.804388	3.732961e-49	5.579686e-47
MsaG015364	MsaG002745	0.842269	5.331402e-58	2.236089e-55
MsaG015364	MsaG002307	0.822090	5.022800e-53	1.167598e-50
MsaG015364	MsaG000843	0.802747	8.144888e-49	1.172046e-46
MsaG015364	MsaG008983	0.831267	3.315763e-55	9.950696e-53
MsaG015364	MsaG008854	0.800970	1.879687e-48	2.597635e-46
MsaG015364	MsaG014863	0.827555	2.618374e-54	7.071636e-52
MsaG015364	MsaG013008	0.807011	1.056780e-49	1.679591e-47
MsaG015364	MsaG015244	0.804442	3.638518e-49	5.445128e-47
MsaG015364	MsaG016152	0.854133	2.906772e-61	1.820644e-58
MsaG015364	MsaG012824	0.829555	8.652166e-55	2.472362e-52
MsaG015364	MsaG011633	0.848157	1.387007e-59	7.060999e-57
MsaG015364	MsaG013857	0.848012	1.520454e-59	7.703345e-57
MsaG015364	MsaG013372	0.838645	4.678628e-57	1.750690e-54
MsaG015364	MsaG015300	0.821327	7.525008e-53	1.714178e-50
MsaG015364	MsaG011352	0.850866	2.455013e-60	1.370910e-57
MsaG015364	MsaG013071	0.819957	1.548327e-52	3.401466e-50
MsaG015364	MsaG018001	0.804886	2.941579e-49	4.447870e-47
MsaG015364	MsaG021945	0.815092	1.909374e-51	3.699440e-49
MsaG015364	MsaG027643	0.818633	3.089757e-52	6.555562e-50
MsaG015364	MsaG027166	0.823320	2.606334e-53	6.263432e-51
MsaG015364	MsaG029395	0.809107	3.800329e-50	6.351636e-48
MsaG015364	MsaG034613	0.807974	6.614462e-50	1.075763e-47
MsaG015364	MsaG032120	0.819844	1.642276e-52	3.596946e-50
MsaG015364	MsaG032455	0.800225	2.661264e-48	3.616496e-46
MsaG015364	MsaG032342	0.828371	1.669648e-54	4.613926e-52
MsaG015364	MsaG030136	0.854171	2.834030e-61	1.777561e-58
MsaG015364	MsaG030752	0.801506	1.461534e-48	2.044456e-46
MsaG015364	MsaG031107	0.808015	6.485352e-50	1.055797e-47
MsaG015364	MsaG033058	0.817726	4.944861e-52	1.024812e-49
MsaG015364	MsaG032866	0.832882	1.328641e-55	4.179617e-53
MsaG015364	MsaG030270	0.814265	2.905656e-51	5.513958e-49
MsaG015364	MsaG035293	0.817787	4.790523e-52	9.944163e-50
MsaG015364	MsaG038711	0.806805	1.167531e-49	1.846629e-47
MsaG015364	MsaG035918	0.824866	1.134711e-53	2.843911e-51
MsaG015364	MsaG042304	0.803537	5.598425e-49	8.204632e-47
MsaG015364	MsaG041446	0.840400	1.645559e-57	6.505007e-55
MsaG015364	MsaG041359	0.807550	8.133645e-50	1.309379e-47
MsaG015364	MsaG043164	0.812015	9.007511e-51	1.615934e-48
MsaG015364	MsaG045457	0.829184	1.064069e-54	3.008115e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015364	MtrunA17_Chr3g0117121	100.000	191	0	0	1	191	1	191	9.55e-142	392
MsaG015364	MtrunA17_Chr4g0058651	75.000	176	34	4	7	177	8	178	3.53e-86	252
MsaG015364	MtrunA17_Chr7g0227511	59.278	194	56	3	1	193	1	172	1.68e-71	214
MsaG015364	MtrunA17_Chr6g0449641	64.151	159	30	2	1	159	1	132	1.01e-65	198
MsaG015364	MtrunA17_Chr6g0449651	78.261	115	25	0	1	115	58	172	9.28e-64	195
MsaG015364	MtrunA17_Chr8g0353981	75.221	113	25	1	1	113	1	110	3.03e-52	167
MsaG015364	MtrunA17_Chr5g0402611	55.556	153	58	1	4	156	2	144	1.80e-51	167
MsaG015364	MtrunA17_Chr5g0437571	71.154	104	30	0	8	111	4	107	2.73e-50	160
MsaG015364	MtrunA17_Chr2g0311601	56.934	137	59	0	9	145	12	148	4.52e-50	159
MsaG015364	MtrunA17_Chr3g0115431	54.140	157	68	2	4	157	3	158	8.84e-48	155
MsaG015364	MtrunA17_Chr4g0043421	65.714	105	36	0	9	113	14	118	2.18e-47	153
MsaG015364	MtrunA17_Chr3g0097221	55.245	143	64	0	5	147	2	144	6.40e-47	155
MsaG015364	MtrunA17_Chr5g0437401	53.571	140	54	1	8	136	9	148	7.15e-47	152
MsaG015364	MtrunA17_Chr3g0106101	64.423	104	37	0	8	111	5	108	2.05e-46	150
MsaG015364	MtrunA17_Chr3g0114061	66.346	104	35	0	8	111	6	109	6.56e-46	149
MsaG015364	MtrunA17_Chr5g0438091	51.408	142	60	2	8	140	37	178	6.40e-44	145
MsaG015364	MtrunA17_Chr3g0129071	60.550	109	43	0	9	117	46	154	1.57e-43	145
MsaG015364	MtrunA17_Chr3g0113891	65.625	96	33	0	8	103	12	107	1.80e-42	140
MsaG015364	MtrunA17_Chr4g0030001	55.455	110	48	1	9	117	23	132	8.42e-40	134
MsaG015364	MtrunA17_Chr1g0200201	58.252	103	43	0	11	113	73	175	3.37e-39	134
MsaG015364	MtrunA17_Chr5g0432451	57.692	130	45	2	9	128	42	171	3.81e-39	134
MsaG015364	MtrunA17_Chr7g0260971	57.798	109	45	1	3	110	7	115	2.27e-38	131
MsaG015364	MtrunA17_Chr8g0351701	57.143	105	44	1	10	113	23	127	2.00e-37	129
MsaG015364	MtrunA17_Chr8g0351721	56.410	117	50	1	10	125	18	134	8.14e-37	127
MsaG015364	MtrunA17_Chr1g0184281	54.701	117	47	2	1	111	1	117	6.43e-36	124
MsaG015364	MtrunA17_Chr7g0225111	50.909	110	51	1	9	118	4	110	1.48e-34	118
MsaG015364	MtrunA17_Chr7g0245871	61.053	95	36	1	10	103	27	121	1.65e-34	122
MsaG015364	MtrunA17_Chr6g0460951	51.818	110	50	2	9	115	39	148	1.67e-33	119
MsaG015364	MtrunA17_Chr5g0435641	51.485	101	48	1	5	104	2	102	2.96e-32	115
MsaG015364	MtrunA17_Chr7g0261031	57.292	96	40	1	9	103	7	102	4.65e-32	115
MsaG015364	MtrunA17_Chr8g0374601	46.789	109	58	0	10	118	26	134	6.23e-32	116
MsaG015364	MtrunA17_Chr1g0184271	54.737	95	42	1	10	103	12	106	1.20e-31	114
MsaG015364	MtrunA17_Chr5g0444351	44.628	121	65	1	11	129	6	126	1.42e-30	109
MsaG015364	MtrunA17_Chr8g0374591	47.115	104	55	0	10	113	8	111	1.63e-30	108
MsaG015364	MtrunA17_Chr7g0245861	47.458	118	59	2	10	124	12	129	9.22e-30	107
MsaG015364	MtrunA17_Chr4g0059901	48.000	100	52	0	11	110	11	110	1.88e-29	109
MsaG015364	MtrunA17_Chr8g0374581	46.364	110	58	1	10	118	8	117	4.04e-28	105
MsaG015364	MtrunA17_Chr6g0452661	45.918	98	52	1	8	104	7	104	7.15e-28	105
MsaG015364	MtrunA17_Chr8g0342351	43.689	103	58	0	11	113	13	115	1.92e-26	101
MsaG015364	MtrunA17_Chr6g0460941	48.315	89	45	1	10	97	7	95	5.70e-26	95.9
MsaG015364	MtrunA17_Chr6g0452671	35.252	139	85	2	11	145	12	149	3.11e-25	97.1
MsaG015364	MtrunA17_Chr6g0452691	39.370	127	72	2	8	129	7	133	4.91e-24	93.6
MsaG015364	MtrunA17_Chr4g0055441	41.053	95	55	1	11	104	3	97	2.47e-23	90.9
MsaG015364	MtrunA17_Chr2g0330201	43.011	93	53	0	11	103	20	112	4.33e-23	93.6
MsaG015364	MtrunA17_Chr4g0040831	30.488	164	103	3	1	161	6	161	3.02e-22	89.4
MsaG015364	MtrunA17_Chr5g0439111	39.423	104	62	1	8	110	7	110	6.01e-20	84.0
MsaG015364	MtrunA17_Chr2g0326041	60.784	51	20	0	9	59	32	82	8.64e-19	77.0
MsaG015364	MtrunA17_Chr4g0046201	29.878	164	98	4	9	163	5	160	2.40e-18	80.5
MsaG015364	MtrunA17_Chr2g0326051	55.932	59	26	0	55	113	5	63	3.38e-16	71.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015364	AT5G63090.4	75.000	148	19	2	1	130	1	148	3.55e-73	219
MsaG015364	AT5G63090.3	75.000	148	19	2	1	130	1	148	3.55e-73	219
MsaG015364	AT5G63090.2	75.000	148	19	2	1	130	1	148	3.55e-73	219
MsaG015364	AT5G63090.1	75.000	148	19	2	1	130	1	148	3.55e-73	219
MsaG015364	AT3G27650.1	79.279	111	23	0	4	114	33	143	4.19e-63	192
MsaG015364	AT1G65620.1	73.451	113	29	1	1	113	1	112	3.95e-51	164
MsaG015364	AT1G65620.4	73.451	113	29	1	1	113	1	112	3.95e-51	164
MsaG015364	AT1G65620.3	73.451	113	29	1	1	113	1	112	3.95e-51	164
MsaG015364	AT1G65620.5	73.451	113	29	1	1	113	1	112	3.95e-51	164
MsaG015364	AT1G65620.2	73.451	113	29	1	1	113	1	112	3.95e-51	164
MsaG015364	AT5G66870.1	62.791	129	41	2	1	129	1	122	2.17e-50	165
MsaG015364	AT2G23660.2	60.504	119	43	1	8	126	3	117	7.37e-49	161
MsaG015364	AT2G23660.3	60.504	119	43	1	8	126	3	117	7.37e-49	161
MsaG015364	AT2G23660.1	60.504	119	43	1	8	126	3	117	7.37e-49	161
MsaG015364	AT2G30130.1	69.231	104	32	0	8	111	6	109	8.45e-49	157
MsaG015364	AT2G30340.2	57.759	116	49	0	9	124	52	167	4.48e-44	147
MsaG015364	AT2G30340.1	57.759	116	49	0	9	124	51	166	4.51e-44	147
MsaG015364	AT1G31320.1	72.727	88	24	0	9	96	12	99	1.42e-43	143
MsaG015364	AT1G07900.1	58.333	108	45	0	9	116	32	139	2.42e-43	143
MsaG015364	AT1G16530.1	62.264	106	39	1	9	113	13	118	1.36e-42	140
MsaG015364	AT2G28500.1	60.194	103	41	0	9	111	54	156	2.47e-41	139
MsaG015364	AT3G11090.1	54.167	120	52	2	8	127	9	125	1.58e-39	133
MsaG015364	AT3G26660.1	56.000	100	44	0	11	110	6	105	2.83e-38	128
MsaG015364	AT3G26620.1	56.000	100	44	0	11	110	6	105	3.05e-38	128
MsaG015364	AT2G40470.2	53.676	136	50	2	9	139	19	146	3.72e-38	130
MsaG015364	AT2G40470.1	53.676	136	50	2	9	139	44	171	7.48e-38	130
MsaG015364	AT3G03760.1	55.769	104	45	1	9	111	50	153	3.61e-36	127
MsaG015364	AT2G45420.1	59.596	99	39	1	13	110	40	138	2.96e-35	125
MsaG015364	AT4G00220.1	59.596	99	39	1	13	110	20	118	3.79e-35	124
MsaG015364	AT5G06080.1	42.405	158	87	3	5	161	2	156	6.13e-34	119
MsaG015364	AT2G42430.1	55.340	103	45	1	9	110	14	116	1.09e-33	120
MsaG015364	AT2G45410.1	55.085	118	47	3	13	126	19	134	2.67e-33	117
MsaG015364	AT4G00210.1	49.600	125	54	2	3	126	4	120	2.67e-33	119
MsaG015364	AT2G31310.1	55.208	96	42	1	9	103	6	101	1.19e-32	116
MsaG015364	AT3G58190.1	55.208	96	42	1	10	104	11	106	2.00e-32	116
MsaG015364	AT2G42440.1	52.577	97	45	1	9	104	6	102	8.29e-32	115
MsaG015364	AT5G35900.1	46.610	118	63	0	11	128	6	123	3.28e-31	113
MsaG015364	AT3G50510.1	44.915	118	62	1	9	126	11	125	4.70e-30	109
MsaG015364	AT3G50510.2	44.915	118	62	1	9	126	11	125	4.70e-30	109
MsaG015364	AT3G13850.1	44.660	103	57	0	11	113	37	139	1.55e-28	107
MsaG015364	AT3G47870.1	42.000	100	58	0	11	110	37	136	9.28e-25	99.0
MsaG015364	AT1G72980.1	44.792	96	53	0	9	104	12	107	8.75e-23	91.3
MsaG015364	AT4G22700.1	37.984	129	76	3	11	136	6	133	2.42e-21	87.0
MsaG015364	AT1G06280.1	42.500	80	46	0	8	87	22	101	5.44e-18	78.6
MsaG015364	AT5G15060.1	40.260	77	44	1	7	81	14	90	5.53e-15	68.9
MsaG015364	AT2G19820.1	36.667	90	56	1	9	97	11	100	5.93e-15	68.6
MsaG015364	AT3G27940.3	39.394	66	40	0	10	75	5	70	2.45e-11	59.7
MsaG015364	AT3G27940.1	39.394	66	40	0	10	75	5	70	2.45e-11	59.7
MsaG015364	AT3G27940.2	39.394	66	40	0	10	75	5	70	2.45e-11	59.7

Find 49 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAGGTGGAAGAGAGGAATT+AGG	0.310902	3:-85959366	None:intergenic
AGACAGTTTAGTTCAAGATT+TGG	0.321989	3:+85959429	MsaT015364.1:CDS
TCTCCCTCCTCTTGTTGTTC+CGG	0.367027	3:+85959386	MsaT015364.1:CDS
GGTTCTTCTGGTGGAAAGTA+TGG	0.385993	3:-85959093	None:intergenic
TTTGGTAATGGAAATGTTGA+TGG	0.387117	3:+85959447	MsaT015364.1:CDS
AATGGAAATGTTGATGGAAA+TGG	0.392662	3:+85959453	MsaT015364.1:CDS
GGAGGAAGAGGAGGAGGTGT+AGG	0.401282	3:+85959549	MsaT015364.1:CDS
GGTGTAGGAGGAAGAGGAGG+AGG	0.413675	3:+85959543	MsaT015364.1:CDS
GGAAGAGGAGGAGGTGTAGG+AGG	0.430574	3:+85959552	MsaT015364.1:CDS
AGTGGAGGTGTAGGAGGAAG+AGG	0.435749	3:+85959537	MsaT015364.1:CDS
GATATAAGTGGAGGTGTAGG+AGG	0.445011	3:+85959531	MsaT015364.1:CDS
AGGAGGGAGAGGTGGAAGAG+AGG	0.445135	3:-85959373	None:intergenic
AGAGGAGGAGGTGTAGGAGG+AGG	0.445819	3:+85959555	MsaT015364.1:CDS
TTTAGTTCAAGATTTGGTAA+TGG	0.446442	3:+85959435	MsaT015364.1:CDS
CGTGTGAGAGATCCTGTTTA+TGG	0.449251	3:+85959237	MsaT015364.1:CDS
AATTCACTGCATCTTCTCTC+TGG	0.451599	3:-85959191	None:intergenic
TTAATCCATGGAATAGCATA+AGG	0.469520	3:-85959492	None:intergenic
GCACCAACACAACCATAAAC+AGG	0.472967	3:-85959249	None:intergenic
GAGGATATAAGTGGAGGTGT+AGG	0.488241	3:+85959528	MsaT015364.1:CDS
GCCAACGTTCACAAGATCTT+CGG	0.491748	3:+85959126	MsaT015364.1:CDS
CTGCATCTTCTCTCTGGTGA+GGG	0.502538	3:-85959185	None:intergenic
CTTCGTCGAAAATGCATGCC+AGG	0.503647	3:+85959057	MsaT015364.1:CDS
ACAAGTTCAGAGGCTTCAAA+AGG	0.506762	3:+85959290	MsaT015364.1:CDS
GCCTCTGAACTTGTCTCTGA+AGG	0.518925	3:-85959281	None:intergenic
GATCCTGTTTATGGTTGTGT+TGG	0.519160	3:+85959246	MsaT015364.1:CDS
GGAGGTGTAGGAGGAAGAGG+AGG	0.524745	3:+85959540	MsaT015364.1:CDS
ACCTCTTCTGAGGATATAAG+TGG	0.541161	3:+85959519	MsaT015364.1:CDS
ACAACAAGAGGAGGGAGAGG+TGG	0.543814	3:-85959381	None:intergenic
CATCTTCTCTCTGGTGAGGG+AGG	0.545055	3:-85959182	None:intergenic
AGGAATTTGCAGGCTGCACA+TGG	0.547297	3:-85959036	None:intergenic
ACTGCATCTTCTCTCTGGTG+AGG	0.556115	3:-85959186	None:intergenic
TGAGATTGATGAAACGAAGC+CGG	0.556305	3:-85959405	None:intergenic
GGAACAACAAGAGGAGGGAG+AGG	0.557580	3:-85959384	None:intergenic
TCCACTTATATCCTCAGAAG+AGG	0.570244	3:-85959520	None:intergenic
TCCTTCAGAGACAAGTTCAG+AGG	0.577279	3:+85959280	MsaT015364.1:CDS
GATTAATGATACCTCTTCTG+AGG	0.582743	3:+85959509	MsaT015364.1:CDS
AACGAAGCCGGAACAACAAG+AGG	0.585009	3:-85959393	None:intergenic
TATGGTGCAAAGATGCAGCC+TGG	0.588900	3:-85959075	None:intergenic
TTCCCTTGCTTATGAAGCCG+AGG	0.588970	3:+85959212	MsaT015364.1:CDS
AGGATCTCTCACACGTGCCT+CGG	0.589439	3:-85959229	None:intergenic
GAAGAGGTATCATTAATCCA+TGG	0.590052	3:-85959504	None:intergenic
GTGCCTCGGCTTCATAAGCA+AGG	0.591344	3:-85959215	None:intergenic
GAAGCCGGAACAACAAGAGG+AGG	0.593525	3:-85959390	None:intergenic
GCCGAAGATCTTGTGAACGT+TGG	0.617944	3:-85959127	None:intergenic
TTGTCTCTGAAGGAAAGAGA+TGG	0.626573	3:-85959271	None:intergenic
AAGCCGGAACAACAAGAGGA+GGG	0.639232	3:-85959389	None:intergenic
TGCCTCGGCTTCATAAGCAA+GGG	0.648971	3:-85959214	None:intergenic
GGTGAGGGAGGAGTTCGTTG+AGG	0.665155	3:-85959170	None:intergenic
TCTTCTGAGGATATAAGTGG+AGG	0.670110	3:+85959522	MsaT015364.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	85959009	85959590	85959009	ID=MsaG015364
Chr3	mRNA	85959009	85959590	85959009	ID=MsaT015364.1;Parent=MsaG015364
Chr3	exon	85959009	85959590	85959009	ID=MsaT015364.1.exon1;Parent=MsaT015364.1
Chr3	CDS	85959009	85959590	85959009	ID=cds.MsaT015364.1;Parent=MsaT015364.1

Gene Sequence

>MsaT015364.1

ATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTCCTTCGTCGAAAATGCATGCCAGGCTGCATCTTTGCACCATACTTTCCACCAGAAGAACCTCAAAAATTCGCCAACGTTCACAAGATCTTCGGCGCAAGCAACGTCACGAAGATCCTCAACGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCCCTTGCTTATGAAGCCGAGGCACGTGTGAGAGATCCTGTTTATGGTTGTGTTGGTGCCATCTCTTTCCTTCAGAGACAAGTTCAGAGGCTTCAAAAGGAACTTGATTCTGCTAATGCTGATCTTCTTCGCTTTGCTTACAATGAAATCTCTCCTAATTCCTCTCTTCCACCTCTCCCTCCTCTTGTTGTTCCGGCTTCGTTTCATCAATCTCAAAGACAGTTTAGTTCAAGATTTGGTAATGGAAATGTTGATGGAAATGGATTTTACTCTTCTTTTCCTTATGCTATTCCATGGATTAATGATACCTCTTCTGAGGATATAAGTGGAGGTGTAGGAGGAAGAGGAGGAGGTGTAGGAGGAGGTAATAATTTGTGA

Protein sequence

>MsaT015364.1

MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRFAYNEISPNSSLPPLPPLVVPASFHQSQRQFSSRFGNGNVDGNGFYSSFPYAIPWINDTSSEDISGGVGGRGGGVGGGNNL*